BLASTN 2.2.10 [Oct-19-2004]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 3230315.2.1
         (457 letters)

Database: Populus_nucl_with_EST.fasta 
           369,679 sequences; 203,408,664 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|CA933056.1|CA933056  MTU5CS.P2.H07 Aspen stem cDNA Librar...    38   0.28 
gb|CF120026.1|CF120026  MTU10CS.P9.D02 Aspen stem cDNA Libra...    38   0.28 

>gb|CA933056.1|CA933056 MTU5CS.P2.H07 Aspen stem cDNA Library Populus tremuloides cDNA,
           mRNA sequence
          Length = 644

 Score = 38.2 bits (19), Expect = 0.28
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                              
Query: 343 tgccgttccactcgagcca 361
           |||||||||||||||||||
Sbjct: 20  tgccgttccactcgagcca 38



>gb|CF120026.1|CF120026 MTU10CS.P9.D02 Aspen stem cDNA Library Populus tremuloides cDNA,
           mRNA sequence
          Length = 618

 Score = 38.2 bits (19), Expect = 0.28
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                              
Query: 343 tgccgttccactcgagcca 361
           |||||||||||||||||||
Sbjct: 20  tgccgttccactcgagcca 38



  Database: Populus_nucl_with_EST.fasta
    Posted date:  Feb 7, 2006  2:49 PM
  Number of letters in database: 203,408,664
  Number of sequences in database:  369,679
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 26,883
Number of Sequences: 369679
Number of extensions: 26883
Number of successful extensions: 8050
Number of sequences better than  0.5: 2
Number of HSP's better than  0.5 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 8048
Number of HSP's gapped (non-prelim): 2
length of query: 457
length of database: 203,408,664
effective HSP length: 18
effective length of query: 439
effective length of database: 196,754,442
effective search space: 86375200038
effective search space used: 86375200038
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)