BLASTN 2.2.10 [Oct-19-2004]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 3230260.2.1
         (863 letters)

Database: Populus_nucl_with_EST.fasta 
           369,679 sequences; 203,408,664 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|BU866628.1|BU866628  S068H12 Populus imbibed seed cDNA li...    42   0.035
gb|CX184900.1|CX184900  H02_45-67_16.ab1 leaf inoculated wit...    42   0.035
gb|CK099652.1|CK099652  A079P35.5pR Hybrid aspen plasmid lib...    40   0.14 
gb|CV245578.1|CV245578  WS0257.B21_N02 PT-MB-N-A-15 Populus ...    40   0.14 
gb|CX170919.1|CX170919  H07_69-76_15.ab1 leaf inoculated wit...    40   0.14 
gb|CX175418.1|CX175418  H12_69-41_16.ab1 leaf inoculated wit...    40   0.14 
gb|DV463315.1|DV463315  MTUNUL1.P14.D03 NUL Populus fremonti...    40   0.14 
gb|DV463884.1|DV463884  MTUNUL1.P20.F03 NUL Populus fremonti...    40   0.14 

>gb|BU866628.1|BU866628 S068H12 Populus imbibed seed cDNA library Populus tremula cDNA 5
           prime, mRNA sequence
          Length = 553

 Score = 42.1 bits (21), Expect = 0.035
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 191 agtagtagcagcagcagcagc 211
           |||||||||||||||||||||
Sbjct: 156 agtagtagcagcagcagcagc 176



>gb|CX184900.1|CX184900 H02_45-67_16.ab1 leaf inoculated with Marssonia pathogen of Populus
           euramericana Populus x canadensis cDNA, mRNA sequence
          Length = 572

 Score = 42.1 bits (21), Expect = 0.035
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 191 agtagtagcagcagcagcagc 211
           |||||||||||||||||||||
Sbjct: 303 agtagtagcagcagcagcagc 323



>gb|CK099652.1|CK099652 A079P35.5pR Hybrid aspen plasmid library Populus tremula x Populus
           tremuloides cDNA clone A079P35 5', mRNA sequence
          Length = 361

 Score = 40.1 bits (20), Expect = 0.14
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 197 agcagcagcagcagccaaag 216
           ||||||||||||||||||||
Sbjct: 134 agcagcagcagcagccaaag 153



>gb|CV245578.1|CV245578 WS0257.B21_N02 PT-MB-N-A-15 Populus trichocarpa cDNA clone
           WS0257_N02 3', mRNA sequence
          Length = 616

 Score = 40.1 bits (20), Expect = 0.14
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 191 agtagtagcagcagcagcag 210
           ||||||||||||||||||||
Sbjct: 380 agtagtagcagcagcagcag 361



>gb|CX170919.1|CX170919 H07_69-76_15.ab1 leaf inoculated with Marssonia pathogen of Populus
           deltoides Populus deltoides cDNA, mRNA sequence
          Length = 650

 Score = 40.1 bits (20), Expect = 0.14
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 191 agtagtagcagcagcagcag 210
           ||||||||||||||||||||
Sbjct: 384 agtagtagcagcagcagcag 403



>gb|CX175418.1|CX175418 H12_69-41_16.ab1 leaf inoculated with Marssonia pathogen of Populus
           deltoides Populus deltoides cDNA, mRNA sequence
          Length = 643

 Score = 40.1 bits (20), Expect = 0.14
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 191 agtagtagcagcagcagcag 210
           ||||||||||||||||||||
Sbjct: 400 agtagtagcagcagcagcag 419



>gb|DV463315.1|DV463315 MTUNUL1.P14.D03 NUL Populus fremontii x Populus angustifolia cDNA,
           mRNA sequence
          Length = 830

 Score = 40.1 bits (20), Expect = 0.14
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 191 agtagtagcagcagcagcag 210
           ||||||||||||||||||||
Sbjct: 385 agtagtagcagcagcagcag 404



>gb|DV463884.1|DV463884 MTUNUL1.P20.F03 NUL Populus fremontii x Populus angustifolia cDNA,
           mRNA sequence
          Length = 873

 Score = 40.1 bits (20), Expect = 0.14
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 191 agtagtagcagcagcagcag 210
           ||||||||||||||||||||
Sbjct: 322 agtagtagcagcagcagcag 341



  Database: Populus_nucl_with_EST.fasta
    Posted date:  Feb 7, 2006  2:49 PM
  Number of letters in database: 203,408,664
  Number of sequences in database:  369,679
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 131,069
Number of Sequences: 369679
Number of extensions: 131069
Number of successful extensions: 44292
Number of sequences better than  0.5: 8
Number of HSP's better than  0.5 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 44265
Number of HSP's gapped (non-prelim): 18
length of query: 863
length of database: 203,408,664
effective HSP length: 19
effective length of query: 844
effective length of database: 196,384,763
effective search space: 165748739972
effective search space used: 165748739972
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)