BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 3204680.2.2
(534 letters)
Database: Populus_nucl_with_EST.fasta
369,679 sequences; 203,408,664 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|DR448910.1|DR448910 qi3 Populus simonii Carr Populus sim... 62 2e-008
gb|CN520678.1|CN520678 GQ0105.B3_G08 GQ010 Populus trichoca... 60 9e-008
gb|DT516698.1|DT516698 WS02432.B21_C13 PTxD-ICC-N-A-14 Popu... 60 9e-008
gb|BU897901.1|BU897901 X071F05 Populus wood cDNA library Po... 54 6e-006
gb|CK088015.1|CK088015 A031P29.3pR Hybrid aspen plasmid lib... 54 6e-006
gb|AI163062.1|AI163062 A031p29u Hybrid aspen plasmid librar... 52 2e-005
gb|BU862883.1|BU862883 S021B03 Populus imbibed seed cDNA li... 52 2e-005
gb|BU865374.1|BU865374 S052H04 Populus imbibed seed cDNA li... 52 2e-005
gb|CF234427.1|CF234427 Ptajxojxo2E10E1010 Poplar cDNA libra... 52 2e-005
gb|CK087727.1|CK087727 A019P11.3pR Hybrid aspen plasmid lib... 52 2e-005
gb|CK102426.1|CK102426 G077P24.5pR Populus tension wood cDN... 52 2e-005
gb|CV255453.1|CV255453 WS02414.B21_A22 PTxD-ICC-N-A-14 Popu... 52 2e-005
gb|CX182528.1|CX182528 H02_45-85_16.ab1 leaf inoculated wit... 52 2e-005
gb|CX656688.1|CX656688 PO02022C11 Poplar SC cDNA library Po... 52 2e-005
gb|CX657151.1|CX657151 PO02030H12 Poplar SC cDNA library Po... 52 2e-005
gb|DT479200.1|DT479200 WS02525.BR_A24 PT-MB-N-A-15 Populus ... 52 2e-005
gb|DT484312.1|DT484312 WS02525.B21_A24 PT-MB-N-A-15 Populus... 52 2e-005
gb|DT508385.1|DT508385 WS02420.BR_N08 PTxD-ICC-N-A-14 Popul... 52 2e-005
gb|DT512995.1|DT512995 WS02420.B21_N08 PTxD-ICC-N-A-14 Popu... 52 2e-005
gb|BU885984.1|BU885984 R038H11 Populus root cDNA library Po... 50 9e-005
gb|BU894809.1|BU894809 X015C11 Populus wood cDNA library Po... 50 9e-005
gb|CX658497.1|CX658497 PO01035G05 Poplar SC cDNA library Po... 50 9e-005
gb|CN522880.1|CN522880 GQ0122.B3_M23 GQ012 Populus trichoca... 48 3e-004
gb|AI162587.1|AI162587 A019P79U Hybrid aspen plasmid librar... 40 0.083
gb|BI128110.1|BI128110 G070P93Y Populus cambium cDNA librar... 40 0.083
gb|BI128475.1|BI128475 G076P35Y Populus cambium cDNA librar... 40 0.083
gb|BI129484.1|BI129484 G091P27Y Populus cambium cDNA librar... 40 0.083
gb|BI130293.1|BI130293 G103P48Y Populus cambium cDNA librar... 40 0.083
gb|BI131617.1|BI131617 G123P33Y Populus cambium cDNA librar... 40 0.083
gb|BI131633.1|BI131633 G123P53Y Populus cambium cDNA librar... 40 0.083
gb|BI132288.1|BI132288 G134P67Y Populus cambium cDNA librar... 40 0.083
gb|BU831561.1|BU831561 T023A06 Populus apical shoot cDNA li... 40 0.083
gb|CF233466.1|CF233466 PtaJXO0023H9H0915 Poplar cDNA librar... 40 0.083
gb|CF233496.1|CF233496 PtaJXO0024C6C0606 Poplar cDNA librar... 40 0.083
gb|CF234458.1|CF234458 Ptajxojxo2H10H1016 Poplar cDNA libra... 40 0.083
gb|CF234532.1|CF234532 PtaJXO0010H6A0701 Poplar cDNA librar... 40 0.083
gb|CF234998.1|CF234998 PtaJXT0017F5F0511 Poplar cDNA librar... 40 0.083
gb|CF235263.1|CF235263 PtaJXT0020F9F0911 Poplar cDNA librar... 40 0.083
gb|CF236082.1|CF236082 PtaJXT0030D7D0707 Poplar cDNA librar... 40 0.083
gb|CK103101.1|CK103101 G103P49.5pR Populus tension wood cDN... 40 0.083
gb|CN517761.1|CN517761 GQ0092.B3_J09 GQ009 Populus trichoca... 40 0.083
gb|CN519255.1|CN519255 GQ0104.B3_D16 GQ010 Populus trichoca... 40 0.083
gb|CN520973.1|CN520973 GQ0105.B3_K21 GQ010 Populus trichoca... 40 0.083
gb|CN522671.1|CN522671 GQ0124.B3_M16 GQ012 Populus trichoca... 40 0.083
gb|CK319038.1|CK319038 X9P06b12 Populus stem seasonal libra... 40 0.083
gb|CK320848.1|CK320848 X9SP07c09 Populus stem seasonal libr... 40 0.083
gb|CX169075.1|CX169075 F08_69-78_12.ab1 leaf inoculated wit... 40 0.083
gb|AY341026.1| Populus tremuloides sucrose synthase mRNA, c... 40 0.083
gb|BI071436.1|BI071436 C057P55U Populus strain T89 leaves P... 38 0.33
gb|BU813479.1|BU813479 N010H12 Populus bark cDNA library Po... 38 0.33
gb|BU814139.1|BU814139 N025E04 Populus bark cDNA library Po... 38 0.33
gb|BU814726.1|BU814726 N032D02 Populus bark cDNA library Po... 38 0.33
gb|BU829593.1|BU829593 K044P82P Populus apical shoot cDNA l... 38 0.33
gb|BU883774.1|BU883774 R001B12 Populus root cDNA library Po... 38 0.33
gb|BU886530.1|BU886530 R047A02 Populus root cDNA library Po... 38 0.33
gb|BU888422.1|BU888422 P007G10 Populus petioles cDNA librar... 38 0.33
gb|CX169778.1|CX169778 C10_69-115_06.ab1 leaf inoculated wi... 38 0.33
gb|CX175910.1|CX175910 F04_69-109_12.ab1 leaf inoculated wi... 38 0.33
gb|CX653689.1|CX653689 PO02005F01 Poplar SC cDNA library Po... 38 0.33
gb|CX655351.1|CX655351 PO02033G04 Poplar SC cDNA library Po... 38 0.33
gb|DN497458.1|DN497458 R001B12.5pR Populus root cDNA librar... 38 0.33
gb|DN497699.1|DN497699 R026G02.5pR Populus root cDNA librar... 38 0.33
>gb|DR448910.1|DR448910 qi3 Populus simonii Carr Populus simonii cDNA similar to betaine
aldehyde dehydrogenase (BADH) of Populus simonii Carr,
mRNA sequence
Length = 1491
Score = 61.9 bits (31), Expect = 2e-008
Identities = 76/91 (83%)
Strand = Plus / Plus
Query: 186 tctgggtaaactgctcacagccctgcttctgccaggctccctggggcggtaacaagcgta 245
||||||| |||||||||||||| ||||||| ||| || || ||||| || || ||||| |
Sbjct: 1322 tctgggtcaactgctcacagccttgcttctaccaagccccatggggaggcaaaaagcgaa 1381
Query: 246 gtggatttggacgtgagcttggagaaggggg 276
|||| ||||| ||||| ||||| ||| ||||
Sbjct: 1382 gtggttttgggcgtgaacttggggaacgggg 1412
Score = 60.0 bits (30), Expect = 9e-008
Identities = 54/62 (87%)
Strand = Plus / Plus
Query: 68 actgaagatgaagccattgaactggccaatgatacacagtatggtttagctggtgctgta 127
||||||||||||||| |||||||||| |||||||| || |||||| | |||| ||| |||
Sbjct: 1204 actgaagatgaagccgttgaactggcaaatgatacccattatggtcttgctgctgcagta 1263
Query: 128 at 129
||
Sbjct: 1264 at 1265
>gb|CN520678.1|CN520678 GQ0105.B3_G08 GQ010 Populus trichocarpa x Populus deltoides cDNA
clone GQ0105_G08 5', mRNA sequence
Length = 757
Score = 60.0 bits (30), Expect = 9e-008
Identities = 60/70 (85%)
Strand = Plus / Plus
Query: 47 ctgtgtgttaaagaatttagcactgaagatgaagccattgaactggccaatgatacacag 106
|||||||||||| |||||| ||||||||||||||||| ||| |||| ||||| || ||
Sbjct: 377 ctgtgtgttaaaacatttagtactgaagatgaagccatcgaattggcaaatgacacccat 436
Query: 107 tatggtttag 116
||||| ||||
Sbjct: 437 tatggcttag 446
Score = 52.0 bits (26), Expect = 2e-005
Identities = 116/146 (79%)
Strand = Plus / Plus
Query: 197 tgctcacagccctgcttctgccaggctccctggggcggtaacaagcgtagtggatttgga 256
||||||||||| |||||||| |||||||| ||||| || | ||||| ||||| |||||
Sbjct: 527 tgctcacagccatgcttctgtcaggctccatggggaggcattaagcgcagtggttttggg 586
Query: 257 cgtgagcttggagaagggggcattgataactacctgagcgtcaagcaagtcacggagtac 316
||||| | |||||| |||| |||| || ||| |||| || ||||| || ||| | ||
Sbjct: 587 cgtgaattaggagaatggggacttgaaaattacttgagtgtgaagcaggtaacgcaatat 646
Query: 317 atctctgatgagccgtggggatggta 342
|| |||||||| || ||||| |||||
Sbjct: 647 atatctgatgaaccatggggttggta 672
>gb|DT516698.1|DT516698 WS02432.B21_C13 PTxD-ICC-N-A-14 Populus trichocarpa x Populus
deltoides cDNA clone WS02432_C13 3', mRNA sequence
Length = 914
Score = 60.0 bits (30), Expect = 9e-008
Identities = 60/70 (85%)
Strand = Plus / Minus
Query: 47 ctgtgtgttaaagaatttagcactgaagatgaagccattgaactggccaatgatacacag 106
|||||||||||| |||||| ||||||||||||||||| ||| |||| ||||| || ||
Sbjct: 619 ctgtgtgttaaaacatttagtactgaagatgaagccatcgaattggcaaatgacacccat 560
Query: 107 tatggtttag 116
||||| ||||
Sbjct: 559 tatggcttag 550
Score = 52.0 bits (26), Expect = 2e-005
Identities = 116/146 (79%)
Strand = Plus / Minus
Query: 197 tgctcacagccctgcttctgccaggctccctggggcggtaacaagcgtagtggatttgga 256
||||||||||| |||||||| |||||||| ||||| || | ||||| ||||| |||||
Sbjct: 469 tgctcacagccatgcttctgtcaggctccatggggaggcattaagcgcagtggttttggg 410
Query: 257 cgtgagcttggagaagggggcattgataactacctgagcgtcaagcaagtcacggagtac 316
||||| | |||||| |||| |||| || ||| |||| || ||||| || ||| | ||
Sbjct: 409 cgtgaattaggagaatggggacttgaaaattacttgagtgtgaagcaggtaacgcaatat 350
Query: 317 atctctgatgagccgtggggatggta 342
|| |||||||| || ||||| |||||
Sbjct: 349 atatctgatgaaccatggggttggta 324
>gb|BU897901.1|BU897901 X071F05 Populus wood cDNA library Populus tremula x Populus
tremuloides cDNA 5 prime, mRNA sequence
Length = 709
Score = 54.0 bits (27), Expect = 6e-006
Identities = 57/67 (85%)
Strand = Plus / Plus
Query: 50 tgtgttaaagaatttagcactgaagatgaagccattgaactggccaatgatacacagtat 109
||||||||| |||||| |||||||||||||||||||| |||| ||||| || || |||
Sbjct: 296 tgtgttaaaacatttagtactgaagatgaagccattgatttggcaaatgacacccattat 355
Query: 110 ggtttag 116
|| ||||
Sbjct: 356 ggcttag 362
Score = 50.1 bits (25), Expect = 9e-005
Identities = 55/65 (84%)
Strand = Plus / Plus
Query: 197 tgctcacagccctgcttctgccaggctccctggggcggtaacaagcgtagtggatttgga 256
||||||||||| |||||||| |||||||| ||||| || | ||||| ||||| |||||
Sbjct: 443 tgctcacagccatgcttctgtcaggctccatggggaggcattaagcgcagtggttttggg 502
Query: 257 cgtga 261
|||||
Sbjct: 503 cgtga 507
>gb|CK088015.1|CK088015 A031P29.3pR Hybrid aspen plasmid library Populus tremula x Populus
tremuloides cDNA clone A031P29 3', mRNA sequence
Length = 611
Score = 54.0 bits (27), Expect = 6e-006
Identities = 57/67 (85%)
Strand = Plus / Minus
Query: 50 tgtgttaaagaatttagcactgaagatgaagccattgaactggccaatgatacacagtat 109
||||||||| |||||| |||||||||||||||||||| |||| ||||| || || |||
Sbjct: 517 tgtgttaaaacatttagtactgaagatgaagccattgatttggcaaatgacacccattat 458
Query: 110 ggtttag 116
|| ||||
Sbjct: 457 ggcttag 451
Score = 50.1 bits (25), Expect = 9e-005
Identities = 55/65 (84%)
Strand = Plus / Minus
Query: 197 tgctcacagccctgcttctgccaggctccctggggcggtaacaagcgtagtggatttgga 256
||||||||||| |||||||| |||||||| ||||| || | ||||| ||||| |||||
Sbjct: 370 tgctcacagccatgcttctgtcaggctccatggggaggcattaagcgcagtggttttggg 311
Query: 257 cgtga 261
|||||
Sbjct: 310 cgtga 306
>gb|AI163062.1|AI163062 A031p29u Hybrid aspen plasmid library Populus tremula x Populus
tremuloides cDNA 5', mRNA sequence
Length = 404
Score = 52.0 bits (26), Expect = 2e-005
Identities = 35/38 (92%)
Strand = Plus / Plus
Query: 50 tgtgttaaagaatttagcactgaagatgaagccattga 87
||||||||| |||||| ||||||||||||||||||||
Sbjct: 308 tgtgttaaaacatttagtactgaagatgaagccattga 345
>gb|BU862883.1|BU862883 S021B03 Populus imbibed seed cDNA library Populus tremula cDNA 5
prime, mRNA sequence
Length = 422
Score = 52.0 bits (26), Expect = 2e-005
Identities = 59/70 (84%)
Strand = Plus / Plus
Query: 47 ctgtgtgttaaagaatttagcactgaagatgaagccattgaactggccaatgatacacag 106
|||||||||||| |||||| |||||||||||||||| ||| |||| ||||| || ||
Sbjct: 233 ctgtgtgttaaaacatttagttctgaagatgaagccatcgaattggcaaatgacacccat 292
Query: 107 tatggtttag 116
||||| ||||
Sbjct: 293 tatggcttag 302
>gb|BU865374.1|BU865374 S052H04 Populus imbibed seed cDNA library Populus tremula cDNA 5
prime, mRNA sequence
Length = 433
Score = 52.0 bits (26), Expect = 2e-005
Identities = 59/70 (84%)
Strand = Plus / Plus
Query: 47 ctgtgtgttaaagaatttagcactgaagatgaagccattgaactggccaatgatacacag 106
|||||||||||| |||||| |||||||||||||||| ||| |||| ||||| || ||
Sbjct: 203 ctgtgtgttaaaacatttagttctgaagatgaagccatcgaattggcaaatgacacccat 262
Query: 107 tatggtttag 116
||||| ||||
Sbjct: 263 tatggcttag 272
Score = 46.1 bits (23), Expect = 0.001
Identities = 32/35 (91%)
Strand = Plus / Plus
Query: 197 tgctcacagccctgcttctgccaggctccctgggg 231
||||||||||| |||||||| |||||||| |||||
Sbjct: 353 tgctcacagccatgcttctgtcaggctccatgggg 387
>gb|CF234427.1|CF234427 Ptajxojxo2E10E1010 Poplar cDNA library from young opposite xylem
Populus alba x Populus tremula cDNA 5', mRNA sequence
Length = 655
Score = 52.0 bits (26), Expect = 2e-005
Identities = 116/146 (79%)
Strand = Plus / Plus
Query: 197 tgctcacagccctgcttctgccaggctccctggggcggtaacaagcgtagtggatttgga 256
||||||||||| |||||||| |||||||| ||||| || | ||||| ||||| |||||
Sbjct: 265 tgctcacagccatgcttctgtcaggctccatggggaggcattaagcgcagtggttttggg 324
Query: 257 cgtgagcttggagaagggggcattgataactacctgagcgtcaagcaagtcacggagtac 316
|| || | |||||| |||| |||| || ||| |||| || ||||| || ||| | ||
Sbjct: 325 cgagaattaggagaatggggacttgaaaattacttgagtgtgaagcaggtaacgcaatat 384
Query: 317 atctctgatgagccgtggggatggta 342
||||||||||| || ||||| |||||
Sbjct: 385 atctctgatgaaccatggggttggta 410
Score = 52.0 bits (26), Expect = 2e-005
Identities = 59/70 (84%)
Strand = Plus / Plus
Query: 47 ctgtgtgttaaagaatttagcactgaagatgaagccattgaactggccaatgatacacag 106
|||||||||||| |||||| |||||||||||||||| ||| |||| ||||| || ||
Sbjct: 115 ctgtgtgttaaaacatttagttctgaagatgaagccatcgaattggcaaatgacacccat 174
Query: 107 tatggtttag 116
||||| ||||
Sbjct: 175 tatggcttag 184
>gb|CK087727.1|CK087727 A019P11.3pR Hybrid aspen plasmid library Populus tremula x Populus
tremuloides cDNA clone A019P11 3', mRNA sequence
Length = 608
Score = 52.0 bits (26), Expect = 2e-005
Identities = 116/146 (79%)
Strand = Plus / Minus
Query: 197 tgctcacagccctgcttctgccaggctccctggggcggtaacaagcgtagtggatttgga 256
||||||||||| |||||||| |||||||| ||||| || | ||||| ||||| |||||
Sbjct: 473 tgctcacagccatgcttctgtcaggctccatggggaggcattaagcgcagtggttttggg 414
Query: 257 cgtgagcttggagaagggggcattgataactacctgagcgtcaagcaagtcacggagtac 316
|| || | |||||| |||| |||| || ||| |||| || ||||| || ||| | ||
Sbjct: 413 cgagaattaggagaatggggacttgaaaattacttgagtgtgaagcaggtaacgcaatat 354
Query: 317 atctctgatgagccgtggggatggta 342
||||||||||| || ||||| |||||
Sbjct: 353 atctctgatgaaccatggggttggta 328
>gb|CK102426.1|CK102426 G077P24.5pR Populus tension wood cDNA library Populus tremula x
Populus tremuloides cDNA clone G077P24 5', mRNA sequence
Length = 501
Score = 52.0 bits (26), Expect = 2e-005
Identities = 59/70 (84%)
Strand = Plus / Plus
Query: 47 ctgtgtgttaaagaatttagcactgaagatgaagccattgaactggccaatgatacacag 106
|||||||||||| |||||| |||||||||||||||| ||| |||| ||||| || ||
Sbjct: 182 ctgtgtgttaaaacatttagttctgaagatgaagccatcgaattggcaaatgacacccat 241
Query: 107 tatggtttag 116
||||| ||||
Sbjct: 242 tatggcttag 251
Score = 46.1 bits (23), Expect = 0.001
Identities = 32/35 (91%)
Strand = Plus / Plus
Query: 197 tgctcacagccctgcttctgccaggctccctgggg 231
||||||||||| |||||||| |||||||| |||||
Sbjct: 332 tgctcacagccatgcttctgtcaggctccatgggg 366
>gb|CV255453.1|CV255453 WS02414.B21_A22 PTxD-ICC-N-A-14 Populus trichocarpa x Populus
deltoides cDNA clone WS02414_A22 3', mRNA sequence
Length = 606
Score = 52.0 bits (26), Expect = 2e-005
Identities = 59/70 (84%)
Strand = Plus / Minus
Query: 15 aaatttggagggaggaagtcttcggtccagtcctgtgtgttaaagaatttagcactgaag 74
|||| ||||| || ||||| ||||| || || || ||||||||| |||||| |||||||
Sbjct: 545 aaatctggagagaagaagttttcgggcctgttctatgtgttaaaacatttagtactgaag 486
Query: 75 atgaagccat 84
||||||||||
Sbjct: 485 atgaagccat 476
Score = 42.1 bits (21), Expect = 0.021
Identities = 54/65 (83%)
Strand = Plus / Minus
Query: 197 tgctcacagccctgcttctgccaggctccctggggcggtaacaagcgtagtggatttgga 256
||||||||||| |||||||| || ||||| ||||| || | ||||| ||||| |||||
Sbjct: 363 tgctcacagccatgcttctgtcaagctccatggggaggcattaagcgcagtggttttggg 304
Query: 257 cgtga 261
|||||
Sbjct: 303 cgtga 299
>gb|CX182528.1|CX182528 H02_45-85_16.ab1 leaf inoculated with Marssonia pathogen of Populus
euramericana Populus x canadensis cDNA, mRNA sequence
Length = 478
Score = 52.0 bits (26), Expect = 2e-005
Identities = 116/146 (79%)
Strand = Plus / Plus
Query: 197 tgctcacagccctgcttctgccaggctccctggggcggtaacaagcgtagtggatttgga 256
||||||||||| |||||||| |||||||| ||||| || | ||||| ||||| |||||
Sbjct: 37 tgctcacagccatgcttctgtcaggctccatggggaggcattaagcgcagtggttttggg 96
Query: 257 cgtgagcttggagaagggggcattgataactacctgagcgtcaagcaagtcacggagtac 316
||||| | |||||| |||| |||| || ||| |||| || ||||| || ||| | ||
Sbjct: 97 cgtgaattaggagaatggggacttgaaaattacttgagtgtgaagcaggtaacgcaatat 156
Query: 317 atctctgatgagccgtggggatggta 342
|| |||||||| || ||||| |||||
Sbjct: 157 atatctgatgaaccatggggttggta 182
>gb|CX656688.1|CX656688 PO02022C11 Poplar SC cDNA library Populus alba x Populus tremula
var. glandulosa cDNA clone PO02022C11 5', mRNA sequence
Length = 366
Score = 52.0 bits (26), Expect = 2e-005
Identities = 116/146 (79%)
Strand = Plus / Plus
Query: 197 tgctcacagccctgcttctgccaggctccctggggcggtaacaagcgtagtggatttgga 256
||||||||||| |||||||| |||||||| ||||| || | ||||| ||||| | |||
Sbjct: 69 tgctcacagccatgcttctgtcaggctccatggggaggcattaagcgcagtggttctggg 128
Query: 257 cgtgagcttggagaagggggcattgataactacctgagcgtcaagcaagtcacggagtac 316
||||| | |||||| |||| |||| || ||| |||| || ||||| || ||| | ||
Sbjct: 129 cgtgaattaggagaatggggacttgaaaattacttgagtgtgaagcaggtaacgcaatat 188
Query: 317 atctctgatgagccgtggggatggta 342
||||||||||| || ||||| |||||
Sbjct: 189 atctctgatgaaccatggggttggta 214
>gb|CX657151.1|CX657151 PO02030H12 Poplar SC cDNA library Populus alba x Populus tremula
var. glandulosa cDNA clone PO02030H12 5', mRNA sequence
Length = 352
Score = 52.0 bits (26), Expect = 2e-005
Identities = 59/70 (84%)
Strand = Plus / Plus
Query: 47 ctgtgtgttaaagaatttagcactgaagatgaagccattgaactggccaatgatacacag 106
|||||||||||| |||||| |||||||||||||||| ||| |||| ||||| || ||
Sbjct: 239 ctgtgtgttaaaacatttagttctgaagatgaagccatcgaattggcaaatgacacccat 298
Query: 107 tatggtttag 116
||||| ||||
Sbjct: 299 tatggcttag 308
>gb|DT479200.1|DT479200 WS02525.BR_A24 PT-MB-N-A-15 Populus trichocarpa cDNA clone
WS02525_A24 5', mRNA sequence
Length = 538
Score = 52.0 bits (26), Expect = 2e-005
Identities = 59/70 (84%)
Strand = Plus / Plus
Query: 15 aaatttggagggaggaagtcttcggtccagtcctgtgtgttaaagaatttagcactgaag 74
|||| ||||| || ||||| ||||| || || || ||||||||| |||||| |||||||
Sbjct: 114 aaatctggagagaagaagttttcgggcctgttctatgtgttaaaacatttagtactgaag 173
Query: 75 atgaagccat 84
||||||||||
Sbjct: 174 atgaagccat 183
Score = 42.1 bits (21), Expect = 0.021
Identities = 54/65 (83%)
Strand = Plus / Plus
Query: 197 tgctcacagccctgcttctgccaggctccctggggcggtaacaagcgtagtggatttgga 256
||||||||||| |||||||| || ||||| ||||| || | ||||| ||||| |||||
Sbjct: 296 tgctcacagccatgcttctgtcaagctccatggggaggcattaagcgcagtggttttggg 355
Query: 257 cgtga 261
|||||
Sbjct: 356 cgtga 360
>gb|DT484312.1|DT484312 WS02525.B21_A24 PT-MB-N-A-15 Populus trichocarpa cDNA clone
WS02525_A24 3', mRNA sequence
Length = 538
Score = 52.0 bits (26), Expect = 2e-005
Identities = 59/70 (84%)
Strand = Plus / Minus
Query: 15 aaatttggagggaggaagtcttcggtccagtcctgtgtgttaaagaatttagcactgaag 74
|||| ||||| || ||||| ||||| || || || ||||||||| |||||| |||||||
Sbjct: 425 aaatctggagagaagaagttttcgggcctgttctatgtgttaaaacatttagtactgaag 366
Query: 75 atgaagccat 84
||||||||||
Sbjct: 365 atgaagccat 356
Score = 42.1 bits (21), Expect = 0.021
Identities = 54/65 (83%)
Strand = Plus / Minus
Query: 197 tgctcacagccctgcttctgccaggctccctggggcggtaacaagcgtagtggatttgga 256
||||||||||| |||||||| || ||||| ||||| || | ||||| ||||| |||||
Sbjct: 243 tgctcacagccatgcttctgtcaagctccatggggaggcattaagcgcagtggttttggg 184
Query: 257 cgtga 261
|||||
Sbjct: 183 cgtga 179
>gb|DT508385.1|DT508385 WS02420.BR_N08 PTxD-ICC-N-A-14 Populus trichocarpa x Populus
deltoides cDNA clone WS02420_N08 5', mRNA sequence
Length = 566
Score = 52.0 bits (26), Expect = 2e-005
Identities = 59/70 (84%)
Strand = Plus / Plus
Query: 15 aaatttggagggaggaagtcttcggtccagtcctgtgtgttaaagaatttagcactgaag 74
|||| ||||| || ||||| ||||| || || || ||||||||| |||||| |||||||
Sbjct: 67 aaatctggagagaagaagttttcgggcctgttctatgtgttaaaacatttagtactgaag 126
Query: 75 atgaagccat 84
||||||||||
Sbjct: 127 atgaagccat 136
Score = 42.1 bits (21), Expect = 0.021
Identities = 54/65 (83%)
Strand = Plus / Plus
Query: 197 tgctcacagccctgcttctgccaggctccctggggcggtaacaagcgtagtggatttgga 256
||||||||||| |||||||| || ||||| ||||| || | ||||| ||||| |||||
Sbjct: 249 tgctcacagccatgcttctgtcaagctccatggggaggcattaagcgcagtggttttggg 308
Query: 257 cgtga 261
|||||
Sbjct: 309 cgtga 313
>gb|DT512995.1|DT512995 WS02420.B21_N08 PTxD-ICC-N-A-14 Populus trichocarpa x Populus
deltoides cDNA clone WS02420_N08 3', mRNA sequence
Length = 566
Score = 52.0 bits (26), Expect = 2e-005
Identities = 59/70 (84%)
Strand = Plus / Minus
Query: 15 aaatttggagggaggaagtcttcggtccagtcctgtgtgttaaagaatttagcactgaag 74
|||| ||||| || ||||| ||||| || || || ||||||||| |||||| |||||||
Sbjct: 500 aaatctggagagaagaagttttcgggcctgttctatgtgttaaaacatttagtactgaag 441
Query: 75 atgaagccat 84
||||||||||
Sbjct: 440 atgaagccat 431
Score = 42.1 bits (21), Expect = 0.021
Identities = 54/65 (83%)
Strand = Plus / Minus
Query: 197 tgctcacagccctgcttctgccaggctccctggggcggtaacaagcgtagtggatttgga 256
||||||||||| |||||||| || ||||| ||||| || | ||||| ||||| |||||
Sbjct: 318 tgctcacagccatgcttctgtcaagctccatggggaggcattaagcgcagtggttttggg 259
Query: 257 cgtga 261
|||||
Sbjct: 258 cgtga 254
>gb|BU885984.1|BU885984 R038H11 Populus root cDNA library Populus tremula x Populus
tremuloides cDNA 5 prime, mRNA sequence
Length = 351
Score = 50.1 bits (25), Expect = 9e-005
Identities = 55/65 (84%)
Strand = Plus / Plus
Query: 197 tgctcacagccctgcttctgccaggctccctggggcggtaacaagcgtagtggatttgga 256
||||||||||| |||||||| |||||||| ||||| || | ||||| ||||| |||||
Sbjct: 55 tgctcacagccatgcttctgtcaggctccatggggaggcattaagcgcagtggttttggg 114
Query: 257 cgtga 261
|||||
Sbjct: 115 cgtga 119
>gb|BU894809.1|BU894809 X015C11 Populus wood cDNA library Populus tremula x Populus
tremuloides cDNA 5 prime, mRNA sequence
Length = 652
Score = 50.1 bits (25), Expect = 9e-005
Identities = 46/53 (86%)
Strand = Plus / Plus
Query: 47 ctgtgtgttaaagaatttagcactgaagatgaagccattgaactggccaatga 99
|||||||||||| |||||| |||||||||||||||| ||| |||| |||||
Sbjct: 60 ctgtgtgttaaaacatttagttctgaagatgaagccatcgaattggcaaatga 112
Score = 38.2 bits (19), Expect = 0.33
Identities = 31/35 (88%)
Strand = Plus / Plus
Query: 197 tgctcacagccctgcttctgccaggctccctgggg 231
||||||||||| |||||||| || ||||| |||||
Sbjct: 210 tgctcacagccatgcttctgtcaagctccatgggg 244
>gb|CX658497.1|CX658497 PO01035G05 Poplar SC cDNA library Populus alba x Populus tremula
var. glandulosa cDNA clone PO01035G05 5', mRNA sequence
Length = 504
Score = 50.1 bits (25), Expect = 9e-005
Identities = 55/65 (84%)
Strand = Plus / Plus
Query: 197 tgctcacagccctgcttctgccaggctccctggggcggtaacaagcgtagtggatttgga 256
||||||||||| |||||||| |||||||| ||||| || | ||||| ||||| |||||
Sbjct: 66 tgctcacagccatgcttctgtcaggctccatggggaggcattaagcgcagtggttttggg 125
Query: 257 cgtga 261
|||||
Sbjct: 126 cgtga 130
>gb|CN522880.1|CN522880 GQ0122.B3_M23 GQ012 Populus trichocarpa x Populus deltoides cDNA
clone GQ0122_M23 5', mRNA sequence
Length = 562
Score = 48.1 bits (24), Expect = 3e-004
Identities = 48/56 (85%)
Strand = Plus / Minus
Query: 29 gaagtcttcggtccagtcctgtgtgttaaagaatttagcactgaagatgaagccat 84
||||| ||||| || || || ||||||||| |||||| |||||||||||||||||
Sbjct: 460 gaagttttcgggcctgttctatgtgttaaaacatttagtactgaagatgaagccat 405
Score = 48.1 bits (24), Expect = 3e-004
Identities = 63/76 (82%)
Strand = Plus / Minus
Query: 186 tctgggtaaactgctcacagccctgcttctgccaggctccctggggcggtaacaagcgta 245
||||||| || ||||||||||| |||||||| || ||||| ||||| || | ||||| |
Sbjct: 303 tctgggtcaattgctcacagccatgcttctgtcaagctccatggggaggcattaagcgca 244
Query: 246 gtggatttggacgtga 261
|||| ||||| |||||
Sbjct: 243 gtggttttgggcgtga 228
>gb|AI162587.1|AI162587 A019P79U Hybrid aspen plasmid library Populus tremula x Populus
tremuloides cDNA 5', mRNA sequence
Length = 417
Score = 40.1 bits (20), Expect = 0.083
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 357 agctgtaaactggcatgaaa 376
||||||||||||||||||||
Sbjct: 22 agctgtaaactggcatgaaa 3
>gb|BI128110.1|BI128110 G070P93Y Populus cambium cDNA library Populus tremula x Populus
tremuloides cDNA, mRNA sequence
Length = 538
Score = 40.1 bits (20), Expect = 0.083
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 357 agctgtaaactggcatgaaa 376
||||||||||||||||||||
Sbjct: 243 agctgtaaactggcatgaaa 224
>gb|BI128475.1|BI128475 G076P35Y Populus cambium cDNA library Populus tremula x Populus
tremuloides cDNA, mRNA sequence
Length = 520
Score = 40.1 bits (20), Expect = 0.083
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 357 agctgtaaactggcatgaaa 376
||||||||||||||||||||
Sbjct: 186 agctgtaaactggcatgaaa 167
>gb|BI129484.1|BI129484 G091P27Y Populus cambium cDNA library Populus tremula x Populus
tremuloides cDNA, mRNA sequence
Length = 475
Score = 40.1 bits (20), Expect = 0.083
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 357 agctgtaaactggcatgaaa 376
||||||||||||||||||||
Sbjct: 305 agctgtaaactggcatgaaa 286
>gb|BI130293.1|BI130293 G103P48Y Populus cambium cDNA library Populus tremula x Populus
tremuloides cDNA, mRNA sequence
Length = 408
Score = 40.1 bits (20), Expect = 0.083
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 357 agctgtaaactggcatgaaa 376
||||||||||||||||||||
Sbjct: 59 agctgtaaactggcatgaaa 40
>gb|BI131617.1|BI131617 G123P33Y Populus cambium cDNA library Populus tremula x Populus
tremuloides cDNA, mRNA sequence
Length = 422
Score = 40.1 bits (20), Expect = 0.083
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 357 agctgtaaactggcatgaaa 376
||||||||||||||||||||
Sbjct: 359 agctgtaaactggcatgaaa 340
>gb|BI131633.1|BI131633 G123P53Y Populus cambium cDNA library Populus tremula x Populus
tremuloides cDNA, mRNA sequence
Length = 490
Score = 40.1 bits (20), Expect = 0.083
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 357 agctgtaaactggcatgaaa 376
||||||||||||||||||||
Sbjct: 448 agctgtaaactggcatgaaa 429
>gb|BI132288.1|BI132288 G134P67Y Populus cambium cDNA library Populus tremula x Populus
tremuloides cDNA, mRNA sequence
Length = 392
Score = 40.1 bits (20), Expect = 0.083
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 357 agctgtaaactggcatgaaa 376
||||||||||||||||||||
Sbjct: 40 agctgtaaactggcatgaaa 21
>gb|BU831561.1|BU831561 T023A06 Populus apical shoot cDNA library Populus tremula x Populus
tremuloides cDNA 5 prime, mRNA sequence
Length = 577
Score = 40.1 bits (20), Expect = 0.083
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 357 agctgtaaactggcatgaaa 376
||||||||||||||||||||
Sbjct: 81 agctgtaaactggcatgaaa 62
>gb|CF233466.1|CF233466 PtaJXO0023H9H0915 Poplar cDNA library from young opposite xylem
Populus alba x Populus tremula cDNA 5', mRNA sequence
Length = 710
Score = 40.1 bits (20), Expect = 0.083
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 357 agctgtaaactggcatgaaa 376
||||||||||||||||||||
Sbjct: 36 agctgtaaactggcatgaaa 17
>gb|CF233496.1|CF233496 PtaJXO0024C6C0606 Poplar cDNA library from young opposite xylem
Populus alba x Populus tremula cDNA 5', mRNA sequence
Length = 622
Score = 40.1 bits (20), Expect = 0.083
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 357 agctgtaaactggcatgaaa 376
||||||||||||||||||||
Sbjct: 317 agctgtaaactggcatgaaa 298
>gb|CF234458.1|CF234458 Ptajxojxo2H10H1016 Poplar cDNA library from young opposite xylem
Populus alba x Populus tremula cDNA 5', mRNA sequence
Length = 677
Score = 40.1 bits (20), Expect = 0.083
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 357 agctgtaaactggcatgaaa 376
||||||||||||||||||||
Sbjct: 184 agctgtaaactggcatgaaa 165
>gb|CF234532.1|CF234532 PtaJXO0010H6A0701 Poplar cDNA library from young opposite xylem
Populus alba x Populus tremula cDNA 5', mRNA sequence
Length = 705
Score = 40.1 bits (20), Expect = 0.083
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 357 agctgtaaactggcatgaaa 376
||||||||||||||||||||
Sbjct: 54 agctgtaaactggcatgaaa 35
>gb|CF234998.1|CF234998 PtaJXT0017F5F0511 Poplar cDNA library from young tension xylem
Populus alba x Populus tremula cDNA 5', mRNA sequence
Length = 760
Score = 40.1 bits (20), Expect = 0.083
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 357 agctgtaaactggcatgaaa 376
||||||||||||||||||||
Sbjct: 361 agctgtaaactggcatgaaa 342
>gb|CF235263.1|CF235263 PtaJXT0020F9F0911 Poplar cDNA library from young tension xylem
Populus alba x Populus tremula cDNA 5', mRNA sequence
Length = 772
Score = 40.1 bits (20), Expect = 0.083
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 357 agctgtaaactggcatgaaa 376
||||||||||||||||||||
Sbjct: 259 agctgtaaactggcatgaaa 240
>gb|CF236082.1|CF236082 PtaJXT0030D7D0707 Poplar cDNA library from young tension xylem
Populus alba x Populus tremula cDNA 5', mRNA sequence
Length = 606
Score = 40.1 bits (20), Expect = 0.083
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 357 agctgtaaactggcatgaaa 376
||||||||||||||||||||
Sbjct: 158 agctgtaaactggcatgaaa 139
>gb|CK103101.1|CK103101 G103P49.5pR Populus tension wood cDNA library Populus tremula x
Populus tremuloides cDNA clone G103P49 5', mRNA sequence
Length = 524
Score = 40.1 bits (20), Expect = 0.083
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 357 agctgtaaactggcatgaaa 376
||||||||||||||||||||
Sbjct: 62 agctgtaaactggcatgaaa 43
>gb|CN517761.1|CN517761 GQ0092.B3_J09 GQ009 Populus trichocarpa x Populus deltoides cDNA
clone GQ0092_J09 5', mRNA sequence
Length = 444
Score = 40.1 bits (20), Expect = 0.083
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 357 agctgtaaactggcatgaaa 376
||||||||||||||||||||
Sbjct: 169 agctgtaaactggcatgaaa 150
>gb|CN519255.1|CN519255 GQ0104.B3_D16 GQ010 Populus trichocarpa x Populus deltoides cDNA
clone GQ0104_D16 5', mRNA sequence
Length = 735
Score = 40.1 bits (20), Expect = 0.083
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 357 agctgtaaactggcatgaaa 376
||||||||||||||||||||
Sbjct: 344 agctgtaaactggcatgaaa 325
>gb|CN520973.1|CN520973 GQ0105.B3_K21 GQ010 Populus trichocarpa x Populus deltoides cDNA
clone GQ0105_K21 5', mRNA sequence
Length = 821
Score = 40.1 bits (20), Expect = 0.083
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 357 agctgtaaactggcatgaaa 376
||||||||||||||||||||
Sbjct: 59 agctgtaaactggcatgaaa 40
>gb|CN522671.1|CN522671 GQ0124.B3_M16 GQ012 Populus trichocarpa x Populus deltoides cDNA
clone GQ0124_M16 5', mRNA sequence
Length = 466
Score = 40.1 bits (20), Expect = 0.083
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 357 agctgtaaactggcatgaaa 376
||||||||||||||||||||
Sbjct: 214 agctgtaaactggcatgaaa 195
>gb|CK319038.1|CK319038 X9P06b12 Populus stem seasonal library Populus deltoides cDNA, mRNA
sequence
Length = 708
Score = 40.1 bits (20), Expect = 0.083
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 357 agctgtaaactggcatgaaa 376
||||||||||||||||||||
Sbjct: 174 agctgtaaactggcatgaaa 155
>gb|CK320848.1|CK320848 X9SP07c09 Populus stem seasonal library Populus deltoides cDNA,
mRNA sequence
Length = 653
Score = 40.1 bits (20), Expect = 0.083
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 357 agctgtaaactggcatgaaa 376
||||||||||||||||||||
Sbjct: 318 agctgtaaactggcatgaaa 299
>gb|CX169075.1|CX169075 F08_69-78_12.ab1 leaf inoculated with Marssonia pathogen of Populus
deltoides Populus deltoides cDNA, mRNA sequence
Length = 653
Score = 40.1 bits (20), Expect = 0.083
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 357 agctgtaaactggcatgaaa 376
||||||||||||||||||||
Sbjct: 63 agctgtaaactggcatgaaa 44
>gb|AY341026.1| Populus tremuloides sucrose synthase mRNA, complete cds
Length = 2792
Score = 40.1 bits (20), Expect = 0.083
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 357 agctgtaaactggcatgaaa 376
||||||||||||||||||||
Sbjct: 1520 agctgtaaactggcatgaaa 1501
>gb|BI071436.1|BI071436 C057P55U Populus strain T89 leaves Populus tremula x Populus
tremuloides cDNA, mRNA sequence
Length = 336
Score = 38.2 bits (19), Expect = 0.33
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 19 ttggagggaggaagtcttc 37
|||||||||||||||||||
Sbjct: 112 ttggagggaggaagtcttc 130
>gb|BU813479.1|BU813479 N010H12 Populus bark cDNA library Populus tremula x Populus
tremuloides cDNA 5 prime, mRNA sequence
Length = 461
Score = 38.2 bits (19), Expect = 0.33
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 19 ttggagggaggaagtcttc 37
|||||||||||||||||||
Sbjct: 442 ttggagggaggaagtcttc 460
Database: Populus_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:49 PM
Number of letters in database: 203,408,664
Number of sequences in database: 369,679
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 66,476
Number of Sequences: 369679
Number of extensions: 66476
Number of successful extensions: 20270
Number of sequences better than 0.5: 62
Number of HSP's better than 0.5 without gapping: 62
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 20189
Number of HSP's gapped (non-prelim): 81
length of query: 534
length of database: 203,408,664
effective HSP length: 19
effective length of query: 515
effective length of database: 196,384,763
effective search space: 101138152945
effective search space used: 101138152945
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)