BLASTN 2.2.10 [Oct-19-2004]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 3204272.2.1
         (739 letters)

Database: Populus_nucl_with_EST.fasta 
           369,679 sequences; 203,408,664 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|BI122281.1|BI122281  I004P65P Populus leaf cDNA library P...    44   0.007
gb|CA823251.1|CA823251  R23A11 two-month-old roots from clon...    44   0.007
gb|AC149484.1|  Populus trichocarpa clone Pop1-69M19, comple...    44   0.007

>gb|BI122281.1|BI122281 I004P65P Populus leaf cDNA library Populus tremula x Populus
           tremuloides cDNA, mRNA sequence
          Length = 593

 Score = 44.1 bits (22), Expect = 0.007
 Identities = 31/34 (91%)
 Strand = Plus / Minus

                                             
Query: 620 aggagttgaagacgattgcgtctgggttccacct 653
           ||||||||||||| ||||| ||||| ||||||||
Sbjct: 222 aggagttgaagacaattgcatctggattccacct 189



>gb|CA823251.1|CA823251 R23A11 two-month-old roots from clone 'Beaupre' Populus trichocarpa
           x Populus deltoides cDNA 5', mRNA sequence
          Length = 536

 Score = 44.1 bits (22), Expect = 0.007
 Identities = 31/34 (91%)
 Strand = Plus / Minus

                                             
Query: 620 aggagttgaagacgattgcgtctgggttccacct 653
           ||||||||||||| ||||| ||||| ||||||||
Sbjct: 100 aggagttgaagacaattgcatctggattccacct 67



>gb|AC149484.1| Populus trichocarpa clone Pop1-69M19, complete sequence
          Length = 96930

 Score = 44.1 bits (22), Expect = 0.007
 Identities = 31/34 (91%)
 Strand = Plus / Plus

                                               
Query: 620   aggagttgaagacgattgcgtctgggttccacct 653
             ||||||||||||| ||||| ||||| ||||||||
Sbjct: 66877 aggagttgaagacaattgcatctggattccacct 66910



  Database: Populus_nucl_with_EST.fasta
    Posted date:  Feb 7, 2006  2:49 PM
  Number of letters in database: 203,408,664
  Number of sequences in database:  369,679
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 75,562
Number of Sequences: 369679
Number of extensions: 75562
Number of successful extensions: 21473
Number of sequences better than  0.5: 3
Number of HSP's better than  0.5 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 21462
Number of HSP's gapped (non-prelim): 11
length of query: 739
length of database: 203,408,664
effective HSP length: 19
effective length of query: 720
effective length of database: 196,384,763
effective search space: 141397029360
effective search space used: 141397029360
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)