BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 3203838.2.1
(534 letters)
Database: Populus_nucl_with_EST.fasta
369,679 sequences; 203,408,664 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|AJ534481.1|AJ534481 AJ534481 Populus euphratica root and... 50 9e-005
gb|CX656047.1|CX656047 PO02045F08 Poplar SC cDNA library Po... 46 0.001
gb|AF139835.1|AF139835 Populus tremula x Populus tremuloide... 46 0.001
gb|AF133675.1|AF133675 Populus tremula x Populus tremuloide... 44 0.005
gb|CA933471.1|CA933471 MTU5CS.P8.E06 Aspen stem cDNA Librar... 40 0.083
gb|CF118925.1|CF118925 MTU10CS.P11.C02 Aspen stem cDNA Libr... 40 0.083
gb|BI139058.1|BI139058 F122P32Y Populus flower cDNA library... 38 0.33
gb|BU861464.1|BU861464 S002D05 Populus imbibed seed cDNA li... 38 0.33
gb|CA924833.1|CA924833 MTU7TL.P10.B12 Aspen leaf cDNA Libra... 38 0.33
gb|CA925020.1|CA925020 MTU7TL.P12.F05 Aspen leaf cDNA Libra... 38 0.33
gb|CA926143.1|CA926143 MTU6CR.P10.E05 Aspen root cDNA Libra... 38 0.33
gb|CA926591.1|CA926591 MTU6CR.P16.G11 Aspen root cDNA Libra... 38 0.33
gb|CA926774.1|CA926774 MTU6CR.P1.A06 Aspen root cDNA Librar... 38 0.33
gb|CA926800.1|CA926800 MTU6CR.P1.C10 Aspen root cDNA Librar... 38 0.33
gb|AJ779450.1|AJ779450 AJ779450 Populus euphratica root 3-6... 38 0.33
gb|CV253210.1|CV253210 WS0221.B21_D13 PTxD-ICC-A-12 Populus... 38 0.33
gb|CV253333.1|CV253333 WS0221.B21_J17 PTxD-ICC-A-12 Populus... 38 0.33
gb|CV253407.1|CV253407 WS0221.B21_N13 PTxD-ICC-A-12 Populus... 38 0.33
gb|CV253578.1|CV253578 WS0222.B21_G01 PTxD-ICC-A-12 Populus... 38 0.33
gb|CV253886.1|CV253886 WS0223.B21_F13 PTxD-ICC-A-12 Populus... 38 0.33
gb|CV256384.1|CV256384 WS0243.B21_L06 PTxD-ICC-N-A-14 Popul... 38 0.33
gb|CV258149.1|CV258149 WS0248.B21_K22 PTxD-ICC-N-A-14 Popul... 38 0.33
gb|CX655191.1|CX655191 PO02031C02 Poplar SC cDNA library Po... 38 0.33
gb|DT478016.1|DT478016 WS02521.BR_J21 PT-MB-N-A-15 Populus ... 38 0.33
gb|DT478988.1|DT478988 WS02524.BR_G13 PT-MB-N-A-15 Populus ... 38 0.33
gb|DT480018.1|DT480018 WS02527.BR_K21 PT-MB-N-A-15 Populus ... 38 0.33
gb|DT487593.1|DT487593 WS02534.B21_B22 PT-MB-N-A-15 Populus... 38 0.33
gb|DT507285.1|DT507285 WS02417.BR_N16 PTxD-ICC-N-A-14 Popul... 38 0.33
gb|DT509199.1|DT509199 WS02423.BR_B07 PTxD-ICC-N-A-14 Popul... 38 0.33
gb|DT511921.1|DT511921 WS02417.B21_N16 PTxD-ICC-N-A-14 Popu... 38 0.33
gb|DT513072.1|DT513072 WS02421.B21_A17 PTxD-ICC-N-A-14 Popu... 38 0.33
gb|DT513812.1|DT513812 WS02423.B21_B07 PTxD-ICC-N-A-14 Popu... 38 0.33
gb|DT516332.1|DT516332 WS02431.B21_B04 PTxD-ICC-N-A-14 Popu... 38 0.33
gb|DT519104.1|DT519104 WS02440.B21_E12 PTxD-ICC-N-A-14 Popu... 38 0.33
gb|DT520316.1|DT520316 WS02447.B21_D13 PTxD-ICC-N-A-14 Popu... 38 0.33
>gb|AJ534481.1|AJ534481 AJ534481 Populus euphratica root and shoot Populus euphratica cDNA
clone 46, mRNA sequence
Length = 574
Score = 50.1 bits (25), Expect = 9e-005
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 510 gtacctgcccgggcggccgctcgaa 534
|||||||||||||||||||||||||
Sbjct: 479 gtacctgcccgggcggccgctcgaa 503
>gb|CX656047.1|CX656047 PO02045F08 Poplar SC cDNA library Populus alba x Populus tremula
var. glandulosa cDNA clone PO02045F08 5', mRNA sequence
Length = 317
Score = 46.1 bits (23), Expect = 0.001
Identities = 32/35 (91%)
Strand = Plus / Minus
Query: 229 gtgttgccgatgtcgatgacgaagcggtacctgac 263
|||||||||||||||||||| || ||||| |||||
Sbjct: 121 gtgttgccgatgtcgatgacaaatcggtatctgac 87
>gb|AF139835.1|AF139835 Populus tremula x Populus tremuloides F-box containing protein TIR1
(TIR1) mRNA, complete cds
Length = 2646
Score = 46.1 bits (23), Expect = 0.001
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 511 tacctgcccgggcggccgctcga 533
|||||||||||||||||||||||
Sbjct: 65 tacctgcccgggcggccgctcga 43
>gb|AF133675.1|AF133675 Populus tremula x Populus tremuloides retinoblastoma-related
protein 1 (RB1) mRNA, complete cds
Length = 3572
Score = 44.1 bits (22), Expect = 0.005
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 512 acctgcccgggcggccgctcga 533
||||||||||||||||||||||
Sbjct: 38 acctgcccgggcggccgctcga 17
>gb|CA933471.1|CA933471 MTU5CS.P8.E06 Aspen stem cDNA Library Populus tremuloides cDNA,
mRNA sequence
Length = 606
Score = 40.1 bits (20), Expect = 0.083
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 510 gtacctgcccgggcggccgc 529
||||||||||||||||||||
Sbjct: 289 gtacctgcccgggcggccgc 270
>gb|CF118925.1|CF118925 MTU10CS.P11.C02 Aspen stem cDNA Library Populus tremuloides cDNA,
mRNA sequence
Length = 786
Score = 40.1 bits (20), Expect = 0.083
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 510 gtacctgcccgggcggccgc 529
||||||||||||||||||||
Sbjct: 656 gtacctgcccgggcggccgc 637
Score = 40.1 bits (20), Expect = 0.083
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 510 gtacctgcccgggcggccgc 529
||||||||||||||||||||
Sbjct: 625 gtacctgcccgggcggccgc 644
>gb|BI139058.1|BI139058 F122P32Y Populus flower cDNA library Populus trichocarpa cDNA, mRNA
sequence
Length = 486
Score = 38.2 bits (19), Expect = 0.33
Identities = 31/35 (88%)
Strand = Plus / Plus
Query: 229 gtgttgccgatgtcgatgacgaagcggtacctgac 263
||||||||||||||||| || || ||||| |||||
Sbjct: 159 gtgttgccgatgtcgataacaaatcggtatctgac 193
>gb|BU861464.1|BU861464 S002D05 Populus imbibed seed cDNA library Populus tremula cDNA 5
prime, mRNA sequence
Length = 531
Score = 38.2 bits (19), Expect = 0.33
Identities = 31/35 (88%)
Strand = Plus / Minus
Query: 229 gtgttgccgatgtcgatgacgaagcggtacctgac 263
||||||||||||||||| || || ||||| |||||
Sbjct: 405 gtgttgccgatgtcgataacaaatcggtatctgac 371
>gb|CA924833.1|CA924833 MTU7TL.P10.B12 Aspen leaf cDNA Library Populus tremuloides cDNA,
mRNA sequence
Length = 569
Score = 38.2 bits (19), Expect = 0.33
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 511 tacctgcccgggcggccgc 529
|||||||||||||||||||
Sbjct: 529 tacctgcccgggcggccgc 547
>gb|CA925020.1|CA925020 MTU7TL.P12.F05 Aspen leaf cDNA Library Populus tremuloides cDNA,
mRNA sequence
Length = 568
Score = 38.2 bits (19), Expect = 0.33
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 511 tacctgcccgggcggccgc 529
|||||||||||||||||||
Sbjct: 529 tacctgcccgggcggccgc 547
>gb|CA926143.1|CA926143 MTU6CR.P10.E05 Aspen root cDNA Library Populus tremuloides cDNA,
mRNA sequence
Length = 691
Score = 38.2 bits (19), Expect = 0.33
Identities = 31/35 (88%)
Strand = Plus / Plus
Query: 229 gtgttgccgatgtcgatgacgaagcggtacctgac 263
||||||||||||||||| || || ||||| |||||
Sbjct: 35 gtgttgccgatgtcgataacaaatcggtatctgac 69
>gb|CA926591.1|CA926591 MTU6CR.P16.G11 Aspen root cDNA Library Populus tremuloides cDNA,
mRNA sequence
Length = 686
Score = 38.2 bits (19), Expect = 0.33
Identities = 31/35 (88%)
Strand = Plus / Plus
Query: 229 gtgttgccgatgtcgatgacgaagcggtacctgac 263
||||||||||||||||| || || ||||| |||||
Sbjct: 35 gtgttgccgatgtcgataacaaatcggtatctgac 69
>gb|CA926774.1|CA926774 MTU6CR.P1.A06 Aspen root cDNA Library Populus tremuloides cDNA,
mRNA sequence
Length = 692
Score = 38.2 bits (19), Expect = 0.33
Identities = 31/35 (88%)
Strand = Plus / Minus
Query: 229 gtgttgccgatgtcgatgacgaagcggtacctgac 263
||||||||||||||||| || || ||||| |||||
Sbjct: 662 gtgttgccgatgtcgataacaaatcggtatctgac 628
>gb|CA926800.1|CA926800 MTU6CR.P1.C10 Aspen root cDNA Library Populus tremuloides cDNA,
mRNA sequence
Length = 701
Score = 38.2 bits (19), Expect = 0.33
Identities = 31/35 (88%)
Strand = Plus / Minus
Query: 229 gtgttgccgatgtcgatgacgaagcggtacctgac 263
||||||||||||||||| || || ||||| |||||
Sbjct: 665 gtgttgccgatgtcgataacaaatcggtatctgac 631
>gb|AJ779450.1|AJ779450 AJ779450 Populus euphratica root 3-6 months Populus euphratica cDNA
clone P0000800002G12F1, mRNA sequence
Length = 718
Score = 38.2 bits (19), Expect = 0.33
Identities = 31/35 (88%)
Strand = Plus / Minus
Query: 229 gtgttgccgatgtcgatgacgaagcggtacctgac 263
||||||||||||||||| || || ||||| |||||
Sbjct: 565 gtgttgccgatgtcgataacaaatcggtatctgac 531
>gb|CV253210.1|CV253210 WS0221.B21_D13 PTxD-ICC-A-12 Populus trichocarpa x Populus
deltoides cDNA clone WS0221_D13 3', mRNA sequence
Length = 714
Score = 38.2 bits (19), Expect = 0.33
Identities = 31/35 (88%)
Strand = Plus / Plus
Query: 229 gtgttgccgatgtcgatgacgaagcggtacctgac 263
||||||||||||||||| || || ||||| |||||
Sbjct: 217 gtgttgccgatgtcgataacaaatcggtatctgac 251
>gb|CV253333.1|CV253333 WS0221.B21_J17 PTxD-ICC-A-12 Populus trichocarpa x Populus
deltoides cDNA clone WS0221_J17 3', mRNA sequence
Length = 723
Score = 38.2 bits (19), Expect = 0.33
Identities = 31/35 (88%)
Strand = Plus / Plus
Query: 229 gtgttgccgatgtcgatgacgaagcggtacctgac 263
||||||||||||||||| || || ||||| |||||
Sbjct: 200 gtgttgccgatgtcgataacaaatcggtatctgac 234
>gb|CV253407.1|CV253407 WS0221.B21_N13 PTxD-ICC-A-12 Populus trichocarpa x Populus
deltoides cDNA clone WS0221_N13 3', mRNA sequence
Length = 716
Score = 38.2 bits (19), Expect = 0.33
Identities = 31/35 (88%)
Strand = Plus / Plus
Query: 229 gtgttgccgatgtcgatgacgaagcggtacctgac 263
||||||||||||||||| || || ||||| |||||
Sbjct: 182 gtgttgccgatgtcgataacaaatcggtatctgac 216
>gb|CV253578.1|CV253578 WS0222.B21_G01 PTxD-ICC-A-12 Populus trichocarpa x Populus
deltoides cDNA clone WS0222_G01 3', mRNA sequence
Length = 710
Score = 38.2 bits (19), Expect = 0.33
Identities = 31/35 (88%)
Strand = Plus / Plus
Query: 229 gtgttgccgatgtcgatgacgaagcggtacctgac 263
||||||||||||||||| || || ||||| |||||
Sbjct: 232 gtgttgccgatgtcgataacaaatcggtatctgac 266
>gb|CV253886.1|CV253886 WS0223.B21_F13 PTxD-ICC-A-12 Populus trichocarpa x Populus
deltoides cDNA clone WS0223_F13 3', mRNA sequence
Length = 727
Score = 38.2 bits (19), Expect = 0.33
Identities = 31/35 (88%)
Strand = Plus / Plus
Query: 229 gtgttgccgatgtcgatgacgaagcggtacctgac 263
||||||||||||||||| || || ||||| |||||
Sbjct: 200 gtgttgccgatgtcgataacaaatcggtatctgac 234
>gb|CV256384.1|CV256384 WS0243.B21_L06 PTxD-ICC-N-A-14 Populus trichocarpa x Populus
deltoides cDNA clone WS0243_L06 3', mRNA sequence
Length = 916
Score = 38.2 bits (19), Expect = 0.33
Identities = 31/35 (88%)
Strand = Plus / Plus
Query: 229 gtgttgccgatgtcgatgacgaagcggtacctgac 263
||||||||||||||||| || || ||||| |||||
Sbjct: 190 gtgttgccgatgtcgataacaaatcggtatctgac 224
>gb|CV258149.1|CV258149 WS0248.B21_K22 PTxD-ICC-N-A-14 Populus trichocarpa x Populus
deltoides cDNA clone WS0248_K22 3', mRNA sequence
Length = 785
Score = 38.2 bits (19), Expect = 0.33
Identities = 31/35 (88%)
Strand = Plus / Plus
Query: 229 gtgttgccgatgtcgatgacgaagcggtacctgac 263
||||||||||||||||| || || ||||| |||||
Sbjct: 134 gtgttgccgatgtcgataacaaatcggtatctgac 168
>gb|CX655191.1|CX655191 PO02031C02 Poplar SC cDNA library Populus alba x Populus tremula
var. glandulosa cDNA clone PO02031C02 5', mRNA sequence
Length = 660
Score = 38.2 bits (19), Expect = 0.33
Identities = 31/35 (88%)
Strand = Plus / Minus
Query: 229 gtgttgccgatgtcgatgacgaagcggtacctgac 263
||||||||||||||||| || || ||||| |||||
Sbjct: 589 gtgttgccgatgtcgataacaaatcggtatctgac 555
>gb|DT478016.1|DT478016 WS02521.BR_J21 PT-MB-N-A-15 Populus trichocarpa cDNA clone
WS02521_J21 5', mRNA sequence
Length = 903
Score = 38.2 bits (19), Expect = 0.33
Identities = 31/35 (88%)
Strand = Plus / Plus
Query: 229 gtgttgccgatgtcgatgacgaagcggtacctgac 263
||||||||||||||||| || || ||||| |||||
Sbjct: 195 gtgttgccgatgtcgataacaaatcggtatctgac 229
>gb|DT478988.1|DT478988 WS02524.BR_G13 PT-MB-N-A-15 Populus trichocarpa cDNA clone
WS02524_G13 5', mRNA sequence
Length = 809
Score = 38.2 bits (19), Expect = 0.33
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 20 caataaaccaaagcccaaa 38
|||||||||||||||||||
Sbjct: 528 caataaaccaaagcccaaa 510
>gb|DT480018.1|DT480018 WS02527.BR_K21 PT-MB-N-A-15 Populus trichocarpa cDNA clone
WS02527_K21 5', mRNA sequence
Length = 825
Score = 38.2 bits (19), Expect = 0.33
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 20 caataaaccaaagcccaaa 38
|||||||||||||||||||
Sbjct: 534 caataaaccaaagcccaaa 516
>gb|DT487593.1|DT487593 WS02534.B21_B22 PT-MB-N-A-15 Populus trichocarpa cDNA clone
WS02534_B22 3', mRNA sequence
Length = 872
Score = 38.2 bits (19), Expect = 0.33
Identities = 31/35 (88%)
Strand = Plus / Plus
Query: 229 gtgttgccgatgtcgatgacgaagcggtacctgac 263
||||||||||||||||| || || ||||| |||||
Sbjct: 298 gtgttgccgatgtcgataacaaatcggtatctgac 332
Score = 38.2 bits (19), Expect = 0.33
Identities = 31/35 (88%)
Strand = Plus / Plus
Query: 229 gtgttgccgatgtcgatgacgaagcggtacctgac 263
||||||||||||||||| || || ||||| |||||
Sbjct: 207 gtgttgccgatgtcgataacaaatcggtatctgac 241
>gb|DT507285.1|DT507285 WS02417.BR_N16 PTxD-ICC-N-A-14 Populus trichocarpa x Populus
deltoides cDNA clone WS02417_N16 5', mRNA sequence
Length = 422
Score = 38.2 bits (19), Expect = 0.33
Identities = 31/35 (88%)
Strand = Plus / Minus
Query: 229 gtgttgccgatgtcgatgacgaagcggtacctgac 263
||||||||||||||||| || || ||||| |||||
Sbjct: 223 gtgttgccgatgtcgataacaaatcggtatctgac 189
>gb|DT509199.1|DT509199 WS02423.BR_B07 PTxD-ICC-N-A-14 Populus trichocarpa x Populus
deltoides cDNA clone WS02423_B07 5', mRNA sequence
Length = 661
Score = 38.2 bits (19), Expect = 0.33
Identities = 31/35 (88%)
Strand = Plus / Minus
Query: 229 gtgttgccgatgtcgatgacgaagcggtacctgac 263
||||||||||||||||| || || ||||| |||||
Sbjct: 528 gtgttgccgatgtcgataacaaatcggtatctgac 494
>gb|DT511921.1|DT511921 WS02417.B21_N16 PTxD-ICC-N-A-14 Populus trichocarpa x Populus
deltoides cDNA clone WS02417_N16 3', mRNA sequence
Length = 422
Score = 38.2 bits (19), Expect = 0.33
Identities = 31/35 (88%)
Strand = Plus / Plus
Query: 229 gtgttgccgatgtcgatgacgaagcggtacctgac 263
||||||||||||||||| || || ||||| |||||
Sbjct: 200 gtgttgccgatgtcgataacaaatcggtatctgac 234
>gb|DT513072.1|DT513072 WS02421.B21_A17 PTxD-ICC-N-A-14 Populus trichocarpa x Populus
deltoides cDNA clone WS02421_A17 3', mRNA sequence
Length = 911
Score = 38.2 bits (19), Expect = 0.33
Identities = 31/35 (88%)
Strand = Plus / Plus
Query: 229 gtgttgccgatgtcgatgacgaagcggtacctgac 263
||||||||||||||||| || || ||||| |||||
Sbjct: 290 gtgttgccgatgtcgataacaaatcggtatctgac 324
>gb|DT513812.1|DT513812 WS02423.B21_B07 PTxD-ICC-N-A-14 Populus trichocarpa x Populus
deltoides cDNA clone WS02423_B07 3', mRNA sequence
Length = 662
Score = 38.2 bits (19), Expect = 0.33
Identities = 31/35 (88%)
Strand = Plus / Plus
Query: 229 gtgttgccgatgtcgatgacgaagcggtacctgac 263
||||||||||||||||| || || ||||| |||||
Sbjct: 135 gtgttgccgatgtcgataacaaatcggtatctgac 169
>gb|DT516332.1|DT516332 WS02431.B21_B04 PTxD-ICC-N-A-14 Populus trichocarpa x Populus
deltoides cDNA clone WS02431_B04 3', mRNA sequence
Length = 892
Score = 38.2 bits (19), Expect = 0.33
Identities = 31/35 (88%)
Strand = Plus / Minus
Query: 229 gtgttgccgatgtcgatgacgaagcggtacctgac 263
||||||||||||||||| || || ||||| |||||
Sbjct: 723 gtgttgccgatgtcgataacaaatcggtatctgac 689
>gb|DT519104.1|DT519104 WS02440.B21_E12 PTxD-ICC-N-A-14 Populus trichocarpa x Populus
deltoides cDNA clone WS02440_E12 3', mRNA sequence
Length = 647
Score = 38.2 bits (19), Expect = 0.33
Identities = 31/35 (88%)
Strand = Plus / Plus
Query: 229 gtgttgccgatgtcgatgacgaagcggtacctgac 263
||||||||||||||||| || || ||||| |||||
Sbjct: 192 gtgttgccgatgtcgataacaaatcggtatctgac 226
>gb|DT520316.1|DT520316 WS02447.B21_D13 PTxD-ICC-N-A-14 Populus trichocarpa x Populus
deltoides cDNA clone WS02447_D13 3', mRNA sequence
Length = 292
Score = 38.2 bits (19), Expect = 0.33
Identities = 31/35 (88%)
Strand = Plus / Plus
Query: 229 gtgttgccgatgtcgatgacgaagcggtacctgac 263
||||||||||||||||| || || ||||| |||||
Sbjct: 190 gtgttgccgatgtcgataacaaatcggtatctgac 224
Database: Populus_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:49 PM
Number of letters in database: 203,408,664
Number of sequences in database: 369,679
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 50,921
Number of Sequences: 369679
Number of extensions: 50921
Number of successful extensions: 14032
Number of sequences better than 0.5: 35
Number of HSP's better than 0.5 without gapping: 35
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 13988
Number of HSP's gapped (non-prelim): 44
length of query: 534
length of database: 203,408,664
effective HSP length: 19
effective length of query: 515
effective length of database: 196,384,763
effective search space: 101138152945
effective search space used: 101138152945
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)