BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 3198766.2.1
(1273 letters)
Database: Populus_nucl_with_EST.fasta
369,679 sequences; 203,408,664 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CN523018.1|CN523018 GQ0121.B3_N15 GQ012 Populus trichoca... 56 3e-006
gb|CV225628.1|CV225628 WS0161.B21_P05 PT-DX-A-7 Populus tri... 56 3e-006
gb|CV229205.1|CV229205 WS01912.B21_I24 PT-DX-N-A-10 Populus... 56 3e-006
gb|CV238390.1|CV238390 WS0126.B21_H06 PT-GT-FL-A-3 Populus ... 56 3e-006
gb|CF232283.1|CF232283 PtaJXO0008E5E0509 Poplar cDNA librar... 48 8e-004
gb|CA926654.1|CA926654 MTU6CR.P17.E12 Aspen root cDNA Libra... 46 0.003
gb|CA927435.1|CA927435 MTU6CR.P9.A02 Aspen root cDNA Librar... 46 0.003
gb|CA933488.1|CA933488 MTU5CS.P8.G02 Aspen stem cDNA Librar... 46 0.003
gb|CF119091.1|CF119091 MTU10CS.P13.D03 Aspen stem cDNA Libr... 46 0.003
gb|CF119597.1|CF119597 MTU10CS.P3.H07 Aspen stem cDNA Libra... 46 0.003
gb|CF119974.1|CF119974 MTU10CS.P8.F11 Aspen stem cDNA Libra... 46 0.003
gb|DN503449.1|DN503449 Y016F08.5pR Populus infected leaf su... 46 0.003
gb|DV463759.1|DV463759 MTUNUL1.P2.B01 NUL Populus fremontii... 46 0.003
gb|BI127464.1|BI127464 G061P09Y Populus cambium cDNA librar... 42 0.051
gb|AF185574.2| Populus tremuloides transcription factor MAG... 42 0.051
gb|AI162298.1|AI162298 A015P43U Hybrid aspen plasmid librar... 40 0.20
gb|BI120266.1|BI120266 F012P73Y Populus flower cDNA library... 40 0.20
gb|BI121559.1|BI121559 F039P83Y Populus flower cDNA library... 40 0.20
gb|CA932362.1|CA932362 MTU5CS.P12.A03 Aspen stem cDNA Libra... 40 0.20
gb|CA932363.1|CA932363 MTU5CS.P12.A04 Aspen stem cDNA Libra... 40 0.20
gb|CF232445.1|CF232445 PtaJXO0010E9D0408 Poplar cDNA librar... 40 0.20
gb|CK115131.1|CK115131 Y003H07 Populus infected leaf substr... 40 0.20
gb|CV231695.1|CV231695 WS0195.B21_E22 PT-DX-N-A-10 Populus ... 40 0.20
gb|DT497043.1|DT497043 WS01125.BR_F03 PT-P-FL-A-2 Populus t... 40 0.20
>gb|CN523018.1|CN523018 GQ0121.B3_N15 GQ012 Populus trichocarpa x Populus deltoides cDNA
clone GQ0121_N15 5', mRNA sequence
Length = 353
Score = 56.0 bits (28), Expect = 3e-006
Identities = 73/88 (82%)
Strand = Plus / Plus
Query: 745 cttccacgtggtcaacaacgactacacgcactggctcatgtacgccatcggcggcagcaa 804
|||||||||||| ||||| |||||||| |||||| ||||| |||||||| |||||
Sbjct: 99 cttccacgtggtaaacaatgactacactcactgggaaatgtatgccatcggtggcagtgc 158
Query: 805 ggcccccaccatcatcagccagggcaac 832
| |||||||||| |||||||||||||
Sbjct: 159 agaacccaccatcaacagccagggcaac 186
>gb|CV225628.1|CV225628 WS0161.B21_P05 PT-DX-A-7 Populus trichocarpa cDNA clone WS0161_P05
3', mRNA sequence
Length = 678
Score = 56.0 bits (28), Expect = 3e-006
Identities = 73/88 (82%)
Strand = Plus / Minus
Query: 745 cttccacgtggtcaacaacgactacacgcactggctcatgtacgccatcggcggcagcaa 804
|||||||||||| ||||| |||||||| |||||| ||||| |||||||| |||||
Sbjct: 588 cttccacgtggtaaacaatgactacactcactgggaaatgtatgccatcggtggcagtgc 529
Query: 805 ggcccccaccatcatcagccagggcaac 832
| |||||||||| |||||||||||||
Sbjct: 528 agaacccaccatcaacagccagggcaac 501
>gb|CV229205.1|CV229205 WS01912.B21_I24 PT-DX-N-A-10 Populus trichocarpa cDNA clone
WS01912_I24 3', mRNA sequence
Length = 678
Score = 56.0 bits (28), Expect = 3e-006
Identities = 73/88 (82%)
Strand = Plus / Minus
Query: 745 cttccacgtggtcaacaacgactacacgcactggctcatgtacgccatcggcggcagcaa 804
|||||||||||| ||||| |||||||| |||||| ||||| |||||||| |||||
Sbjct: 588 cttccacgtggtaaacaatgactacactcactgggaaatgtatgccatcggtggcagtgc 529
Query: 805 ggcccccaccatcatcagccagggcaac 832
| |||||||||| |||||||||||||
Sbjct: 528 agaacccaccatcaacagccagggcaac 501
>gb|CV238390.1|CV238390 WS0126.B21_H06 PT-GT-FL-A-3 Populus trichocarpa cDNA clone
WS0126_H06 3', mRNA sequence
Length = 593
Score = 56.0 bits (28), Expect = 3e-006
Identities = 73/88 (82%)
Strand = Plus / Minus
Query: 745 cttccacgtggtcaacaacgactacacgcactggctcatgtacgccatcggcggcagcaa 804
|||||||||||| ||||| |||||||| |||||| ||||| |||||||| |||||
Sbjct: 466 cttccacgtggtaaacaatgactacactcactgggaaatgtatgccatcggtggcagtgc 407
Query: 805 ggcccccaccatcatcagccagggcaac 832
| |||||||||| |||||||||||||
Sbjct: 406 agaacccaccatcaacagccagggcaac 379
>gb|CF232283.1|CF232283 PtaJXO0008E5E0509 Poplar cDNA library from young opposite xylem
Populus alba x Populus tremula cDNA 5', mRNA sequence
Length = 498
Score = 48.1 bits (24), Expect = 8e-004
Identities = 72/88 (81%)
Strand = Plus / Plus
Query: 745 cttccacgtggtcaacaacgactacacgcactggctcatgtacgccatcggcggcagcaa 804
|||||| ||||| ||||| |||||||| |||||| ||||| |||||||| |||||
Sbjct: 83 cttccatgtggtaaacaatgactacactcactgggaaatgtatgccatcggtggcagtgc 142
Query: 805 ggcccccaccatcatcagccagggcaac 832
| |||||||||| |||||||||||||
Sbjct: 143 agagcccaccatcaacagccagggcaac 170
>gb|CA926654.1|CA926654 MTU6CR.P17.E12 Aspen root cDNA Library Populus tremuloides cDNA,
mRNA sequence
Length = 514
Score = 46.1 bits (23), Expect = 0.003
Identities = 71/87 (81%)
Strand = Plus / Minus
Query: 746 ttccacgtggtcaacaacgactacacgcactggctcatgtacgccatcggcggcagcaag 805
||||| ||||| ||||| |||||||| |||||| ||||| |||||||| |||||
Sbjct: 514 ttccatgtggtaaacaatgactacactcactgggaaatgtatgccatcggtggcagtgca 455
Query: 806 gcccccaccatcatcagccagggcaac 832
| |||||||||| |||||||||||||
Sbjct: 454 gaacccaccatcaacagccagggcaac 428
>gb|CA927435.1|CA927435 MTU6CR.P9.A02 Aspen root cDNA Library Populus tremuloides cDNA,
mRNA sequence
Length = 509
Score = 46.1 bits (23), Expect = 0.003
Identities = 71/87 (81%)
Strand = Plus / Minus
Query: 746 ttccacgtggtcaacaacgactacacgcactggctcatgtacgccatcggcggcagcaag 805
||||| ||||| ||||| || ||||| |||||| |||||||||||||| |||||
Sbjct: 509 ttccatgtggtgaacaatgattacactcactgggaaatgtacgccatcggtggcagtgca 450
Query: 806 gcccccaccatcatcagccagggcaac 832
| |||||||||| |||||||||||||
Sbjct: 449 gaacccaccatcaacagccagggcaac 423
>gb|CA933488.1|CA933488 MTU5CS.P8.G02 Aspen stem cDNA Library Populus tremuloides cDNA,
mRNA sequence
Length = 509
Score = 46.1 bits (23), Expect = 0.003
Identities = 71/87 (81%)
Strand = Plus / Minus
Query: 746 ttccacgtggtcaacaacgactacacgcactggctcatgtacgccatcggcggcagcaag 805
||||| ||||| ||||| || ||||| |||||| ||||| |||||||| ||||| |
Sbjct: 509 ttccatgtggtgaacaatgattacactcactgggaaatgtatgccatcggtggcagtgcg 450
Query: 806 gcccccaccatcatcagccagggcaac 832
| |||||||||| |||||||||||||
Sbjct: 449 gaacccaccatcaacagccagggcaac 423
>gb|CF119091.1|CF119091 MTU10CS.P13.D03 Aspen stem cDNA Library Populus tremuloides cDNA,
mRNA sequence
Length = 515
Score = 46.1 bits (23), Expect = 0.003
Identities = 71/87 (81%)
Strand = Plus / Minus
Query: 746 ttccacgtggtcaacaacgactacacgcactggctcatgtacgccatcggcggcagcaag 805
||||| ||||| ||||| |||||||| |||||| ||||| |||||||| |||||
Sbjct: 515 ttccatgtggtaaacaatgactacactcactgggaaatgtatgccatcggtggcagtgca 456
Query: 806 gcccccaccatcatcagccagggcaac 832
| |||||||||| |||||||||||||
Sbjct: 455 gaacccaccatcaacagccagggcaac 429
>gb|CF119597.1|CF119597 MTU10CS.P3.H07 Aspen stem cDNA Library Populus tremuloides cDNA,
mRNA sequence
Length = 515
Score = 46.1 bits (23), Expect = 0.003
Identities = 71/87 (81%)
Strand = Plus / Minus
Query: 746 ttccacgtggtcaacaacgactacacgcactggctcatgtacgccatcggcggcagcaag 805
||||| ||||| ||||| |||||||| |||||| ||||| |||||||| |||||
Sbjct: 515 ttccatgtggtaaacaatgactacactcactgggaaatgtatgccatcggtggcagtgca 456
Query: 806 gcccccaccatcatcagccagggcaac 832
| |||||||||| |||||||||||||
Sbjct: 455 gaacccaccatcaacagccagggcaac 429
>gb|CF119974.1|CF119974 MTU10CS.P8.F11 Aspen stem cDNA Library Populus tremuloides cDNA,
mRNA sequence
Length = 599
Score = 46.1 bits (23), Expect = 0.003
Identities = 71/87 (81%)
Strand = Plus / Plus
Query: 746 ttccacgtggtcaacaacgactacacgcactggctcatgtacgccatcggcggcagcaag 805
||||| ||||| ||||| |||||||| |||||| ||||| |||||||| |||||
Sbjct: 1 ttccatgtggtaaacaatgactacactcactgggaaatgtatgccatcggtggcagtgca 60
Query: 806 gcccccaccatcatcagccagggcaac 832
| |||||||||| |||||||||||||
Sbjct: 61 gaacccaccatcaacagccagggcaac 87
>gb|DN503449.1|DN503449 Y016F08.5pR Populus infected leaf substracted cDNA library Populus
tremula cDNA clone Y016F08 5', mRNA sequence
Length = 820
Score = 46.1 bits (23), Expect = 0.003
Identities = 41/47 (87%)
Strand = Plus / Plus
Query: 686 gccttcaaccacttcggcagaggcctcgtgcagaggatgccaaggtg 732
||||||||||||||||| ||| || |||||||| |||||||||||
Sbjct: 292 gccttcaaccacttcggagaagggcttgtgcagagaatgccaaggtg 338
Score = 40.1 bits (20), Expect = 0.20
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 746 ttccacgtggtcaacaacgactac 769
||||||||||| ||||||||||||
Sbjct: 352 ttccacgtggtaaacaacgactac 375
>gb|DV463759.1|DV463759 MTUNUL1.P2.B01 NUL Populus fremontii x Populus angustifolia cDNA,
mRNA sequence
Length = 702
Score = 46.1 bits (23), Expect = 0.003
Identities = 41/47 (87%)
Strand = Plus / Plus
Query: 746 ttccacgtggtcaacaacgactacacgcactggctcatgtacgccat 792
||||| |||||||||||||||||||| || ||| |||||||||||
Sbjct: 379 ttccatgtggtcaacaacgactacacccattgggaaatgtacgccat 425
>gb|BI127464.1|BI127464 G061P09Y Populus cambium cDNA library Populus tremula x Populus
tremuloides cDNA, mRNA sequence
Length = 404
Score = 42.1 bits (21), Expect = 0.051
Identities = 66/81 (81%)
Strand = Plus / Plus
Query: 752 gtggtcaacaacgactacacgcactggctcatgtacgccatcggcggcagcaaggccccc 811
||||| ||||| |||||||| |||||| ||||| |||||||| ||||| | |||
Sbjct: 29 gtggtaaacaatgactacactcactgggaaatgtatgccatcggtggcagtgcagagccc 88
Query: 812 accatcatcagccagggcaac 832
||||||| |||||||||||||
Sbjct: 89 accatcaacagccagggcaac 109
>gb|AF185574.2| Populus tremuloides transcription factor MAGL4 mRNA, complete cds
Length = 1195
Score = 42.1 bits (21), Expect = 0.051
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 3 gaattcgcggccgcgtcgact 23
|||||||||||||||||||||
Sbjct: 104 gaattcgcggccgcgtcgact 124
>gb|AI162298.1|AI162298 A015P43U Hybrid aspen plasmid library Populus tremula x Populus
tremuloides cDNA 5', mRNA sequence
Length = 385
Score = 40.1 bits (20), Expect = 0.20
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 809 cccaccatcatcagccagggcaac 832
|||||||||| |||||||||||||
Sbjct: 224 cccaccatcaacagccagggcaac 247
>gb|BI120266.1|BI120266 F012P73Y Populus flower cDNA library Populus trichocarpa cDNA, mRNA
sequence
Length = 184
Score = 40.1 bits (20), Expect = 0.20
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 809 cccaccatcatcagccagggcaac 832
|||||||||| |||||||||||||
Sbjct: 20 cccaccatcaacagccagggcaac 43
>gb|BI121559.1|BI121559 F039P83Y Populus flower cDNA library Populus trichocarpa cDNA, mRNA
sequence
Length = 282
Score = 40.1 bits (20), Expect = 0.20
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 809 cccaccatcatcagccagggcaac 832
|||||||||| |||||||||||||
Sbjct: 20 cccaccatcaacagccagggcaac 43
>gb|CA932362.1|CA932362 MTU5CS.P12.A03 Aspen stem cDNA Library Populus tremuloides cDNA,
mRNA sequence
Length = 509
Score = 40.1 bits (20), Expect = 0.20
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 809 cccaccatcatcagccagggcaac 832
|||||||||| |||||||||||||
Sbjct: 64 cccaccatcaacagccagggcaac 87
>gb|CA932363.1|CA932363 MTU5CS.P12.A04 Aspen stem cDNA Library Populus tremuloides cDNA,
mRNA sequence
Length = 509
Score = 40.1 bits (20), Expect = 0.20
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 809 cccaccatcatcagccagggcaac 832
|||||||||| |||||||||||||
Sbjct: 64 cccaccatcaacagccagggcaac 87
>gb|CF232445.1|CF232445 PtaJXO0010E9D0408 Poplar cDNA library from young opposite xylem
Populus alba x Populus tremula cDNA 5', mRNA sequence
Length = 708
Score = 40.1 bits (20), Expect = 0.20
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 809 cccaccatcatcagccagggcaac 832
|||||||||| |||||||||||||
Sbjct: 512 cccaccatcaacagccagggcaac 535
>gb|CK115131.1|CK115131 Y003H07 Populus infected leaf substracted cDNA library Populus
tremula cDNA clone Y003H07 5', mRNA sequence
Length = 611
Score = 40.1 bits (20), Expect = 0.20
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 809 cccaccatcatcagccagggcaac 832
|||||||||| |||||||||||||
Sbjct: 168 cccaccatcaacagccagggcaac 191
>gb|CV231695.1|CV231695 WS0195.B21_E22 PT-DX-N-A-10 Populus trichocarpa cDNA clone
WS0195_E22 3', mRNA sequence
Length = 574
Score = 40.1 bits (20), Expect = 0.20
Identities = 23/24 (95%)
Strand = Plus / Minus
Query: 809 cccaccatcatcagccagggcaac 832
|||||||||| |||||||||||||
Sbjct: 402 cccaccatcaacagccagggcaac 379
>gb|DT497043.1|DT497043 WS01125.BR_F03 PT-P-FL-A-2 Populus trichocarpa cDNA clone
WS01125_F03 5', mRNA sequence
Length = 978
Score = 40.1 bits (20), Expect = 0.20
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 809 cccaccatcatcagccagggcaac 832
|||||||||| |||||||||||||
Sbjct: 362 cccaccatcaacagccagggcaac 385
Database: Populus_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:49 PM
Number of letters in database: 203,408,664
Number of sequences in database: 369,679
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 112,657
Number of Sequences: 369679
Number of extensions: 112657
Number of successful extensions: 33905
Number of sequences better than 0.5: 24
Number of HSP's better than 0.5 without gapping: 24
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 33862
Number of HSP's gapped (non-prelim): 43
length of query: 1273
length of database: 203,408,664
effective HSP length: 19
effective length of query: 1254
effective length of database: 196,384,763
effective search space: 246266492802
effective search space used: 246266492802
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)