BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 3191506.2.1
(1208 letters)
Database: Populus_nucl_with_EST.fasta
369,679 sequences; 203,408,664 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|DT510837.1|DT510837 WS02427.BR_M17 PTxD-ICC-N-A-14 Popul... 117 1e-024
gb|DT515522.1|DT515522 WS02427.B21_M17 PTxD-ICC-N-A-14 Popu... 117 1e-024
gb|CA929288.1|CA929288 MTU2CA.P11.F04 Aspen apex cDNA Libra... 46 0.003
gb|CA930206.1|CA930206 MTU2CA.P8.E10 Aspen apex cDNA Librar... 46 0.003
gb|CF230845.1|CF230845 PtaC0014A2A0202 Poplar cDNA library ... 46 0.003
gb|CV263738.1|CV263738 WS02022.B21_K12 PTxN-IB-N-A-11 Popul... 42 0.049
gb|AY124702.1| Populus alba glycosyl transferase protein A ... 42 0.049
gb|AY278316.1| Populus alba ecotype 6K3 glycosyl transferas... 42 0.049
gb|AY278315.1| Populus alba ecotype 2AS11 glycosyl transfer... 42 0.049
gb|AJ534481.1|AJ534481 AJ534481 Populus euphratica root and... 40 0.19
gb|CA933471.1|CA933471 MTU5CS.P8.E06 Aspen stem cDNA Librar... 40 0.19
gb|CF118925.1|CF118925 MTU10CS.P11.C02 Aspen stem cDNA Libr... 40 0.19
gb|CV242604.1|CV242604 WS02515.B21_I09 PT-MB-N-A-15 Populus... 40 0.19
>gb|DT510837.1|DT510837 WS02427.BR_M17 PTxD-ICC-N-A-14 Populus trichocarpa x Populus
deltoides cDNA clone WS02427_M17 5', mRNA sequence
Length = 394
Score = 117 bits (59), Expect = 1e-024
Identities = 218/271 (80%)
Strand = Plus / Plus
Query: 444 agagcaatgcttcagtcagcagatgagcaggtccggagcttgaagaagcagagcaccttc 503
|||||||||||||| |||||||||| || || ||||||| || || |||||||| |||
Sbjct: 59 agagcaatgcttcaaacagcagatgaacaagttaggagcttaaaaaaacagagcacattc 118
Query: 504 cttagccagctagcagctaagacaatcccaaatggcatccattgtctttccatgcgctta 563
|| || || || || || || ||| | || ||||| |||||||| | || |||||| ||
Sbjct: 119 ctgagtcaactggctgccaaaacagttcctaatggaatccattgcttgtctatgcgccta 178
Query: 564 acgattgattattatcttctctctccagagaaaagaaagttcccaaatagtgagaacctg 623
|| ||||| || || || || ||| ||||| |||||||| || | |||||| | ||
Sbjct: 179 acaattgactactacctccttcctcttgagaagagaaagtttcctagaagtgaggatttg 238
Query: 624 gaaaatcctgatctttaccattatgctcttttctcggacaatgttttggcagcatcagtt 683
|||||||| ||||||| |||||||| || ||||| |||||||| ||||| |||||||||
Sbjct: 239 gaaaatccaaatctttatcattatgccctcttctctgacaatgtcttggctgcatcagtt 298
Query: 684 gtggtcaactcaaccatcatgaatgctaagg 714
|| ||||||||||||||||||||||| ||||
Sbjct: 299 gttgtcaactcaaccatcatgaatgccaagg 329
>gb|DT515522.1|DT515522 WS02427.B21_M17 PTxD-ICC-N-A-14 Populus trichocarpa x Populus
deltoides cDNA clone WS02427_M17 3', mRNA sequence
Length = 394
Score = 117 bits (59), Expect = 1e-024
Identities = 218/271 (80%)
Strand = Plus / Minus
Query: 444 agagcaatgcttcagtcagcagatgagcaggtccggagcttgaagaagcagagcaccttc 503
|||||||||||||| |||||||||| || || ||||||| || || |||||||| |||
Sbjct: 336 agagcaatgcttcaaacagcagatgaacaagttaggagcttaaaaaaacagagcacattc 277
Query: 504 cttagccagctagcagctaagacaatcccaaatggcatccattgtctttccatgcgctta 563
|| || || || || || || ||| | || ||||| |||||||| | || |||||| ||
Sbjct: 276 ctgagtcaactggctgccaaaacagttcctaatggaatccattgcttgtctatgcgccta 217
Query: 564 acgattgattattatcttctctctccagagaaaagaaagttcccaaatagtgagaacctg 623
|| ||||| || || || || ||| ||||| |||||||| || | |||||| | ||
Sbjct: 216 acaattgactactacctccttcctcttgagaagagaaagtttcctagaagtgaggatttg 157
Query: 624 gaaaatcctgatctttaccattatgctcttttctcggacaatgttttggcagcatcagtt 683
|||||||| ||||||| |||||||| || ||||| |||||||| ||||| |||||||||
Sbjct: 156 gaaaatccaaatctttatcattatgccctcttctctgacaatgtcttggctgcatcagtt 97
Query: 684 gtggtcaactcaaccatcatgaatgctaagg 714
|| ||||||||||||||||||||||| ||||
Sbjct: 96 gttgtcaactcaaccatcatgaatgccaagg 66
>gb|CA929288.1|CA929288 MTU2CA.P11.F04 Aspen apex cDNA Library Populus tremuloides cDNA,
mRNA sequence
Length = 625
Score = 46.1 bits (23), Expect = 0.003
Identities = 41/47 (87%)
Strand = Plus / Minus
Query: 654 ttctcggacaatgttttggcagcatcagttgtggtcaactcaaccat 700
|||||||| ||||||||||||||| |||| || || ||||| |||||
Sbjct: 290 ttctcggataatgttttggcagcagcagtggttgtaaactccaccat 244
>gb|CA930206.1|CA930206 MTU2CA.P8.E10 Aspen apex cDNA Library Populus tremuloides cDNA,
mRNA sequence
Length = 625
Score = 46.1 bits (23), Expect = 0.003
Identities = 41/47 (87%)
Strand = Plus / Minus
Query: 654 ttctcggacaatgttttggcagcatcagttgtggtcaactcaaccat 700
|||||||| ||||||||||||||| |||| || || ||||| |||||
Sbjct: 290 ttctcggataatgttttggcagcagcagtggttgtaaactccaccat 244
>gb|CF230845.1|CF230845 PtaC0014A2A0202 Poplar cDNA library from cambial zone Populus alba
x Populus tremula cDNA 5', mRNA sequence
Length = 474
Score = 46.1 bits (23), Expect = 0.003
Identities = 41/47 (87%)
Strand = Plus / Plus
Query: 654 ttctcggacaatgttttggcagcatcagttgtggtcaactcaaccat 700
|||||||| ||||||||||||||| |||| || || ||||| |||||
Sbjct: 257 ttctcggataatgttttggcagcagcagtggttgtaaactccaccat 303
>gb|CV263738.1|CV263738 WS02022.B21_K12 PTxN-IB-N-A-11 Populus trichocarpa x Populus nigra
cDNA clone WS02022_K12 3', mRNA sequence
Length = 937
Score = 42.1 bits (21), Expect = 0.049
Identities = 36/41 (87%)
Strand = Plus / Minus
Query: 963 aacccaaaatatttgtccatgctcaatcatctaagatttta 1003
|||||||||||| | |||||||| ||||| || ||||||||
Sbjct: 795 aacccaaaatatctatccatgcttaatcacctcagatttta 755
>gb|AY124702.1| Populus alba glycosyl transferase protein A gene, partial cds
Length = 808
Score = 42.1 bits (21), Expect = 0.049
Identities = 36/41 (87%)
Strand = Plus / Plus
Query: 963 aacccaaaatatttgtccatgctcaatcatctaagatttta 1003
|||||||||||| | |||||||| ||||| || ||||||||
Sbjct: 546 aacccaaaatatctatccatgcttaatcacctcagatttta 586
>gb|AY278316.1| Populus alba ecotype 6K3 glycosyl transferase protein A gene, partial
cds
Length = 804
Score = 42.1 bits (21), Expect = 0.049
Identities = 36/41 (87%)
Strand = Plus / Plus
Query: 963 aacccaaaatatttgtccatgctcaatcatctaagatttta 1003
|||||||||||| | |||||||| ||||| || ||||||||
Sbjct: 544 aacccaaaatatctatccatgcttaatcacctcagatttta 584
>gb|AY278315.1| Populus alba ecotype 2AS11 glycosyl transferase protein A gene,
partial cds
Length = 804
Score = 42.1 bits (21), Expect = 0.049
Identities = 36/41 (87%)
Strand = Plus / Plus
Query: 963 aacccaaaatatttgtccatgctcaatcatctaagatttta 1003
|||||||||||| | |||||||| ||||| || ||||||||
Sbjct: 544 aacccaaaatatctatccatgcttaatcacctcagatttta 584
>gb|AJ534481.1|AJ534481 AJ534481 Populus euphratica root and shoot Populus euphratica cDNA
clone 46, mRNA sequence
Length = 574
Score = 40.1 bits (20), Expect = 0.19
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 1189 gtacctgcccgggcggccgc 1208
||||||||||||||||||||
Sbjct: 479 gtacctgcccgggcggccgc 498
>gb|CA933471.1|CA933471 MTU5CS.P8.E06 Aspen stem cDNA Library Populus tremuloides cDNA, mRNA
sequence
Length = 606
Score = 40.1 bits (20), Expect = 0.19
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 1189 gtacctgcccgggcggccgc 1208
||||||||||||||||||||
Sbjct: 289 gtacctgcccgggcggccgc 270
>gb|CF118925.1|CF118925 MTU10CS.P11.C02 Aspen stem cDNA Library Populus tremuloides cDNA,
mRNA sequence
Length = 786
Score = 40.1 bits (20), Expect = 0.19
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 1189 gtacctgcccgggcggccgc 1208
||||||||||||||||||||
Sbjct: 656 gtacctgcccgggcggccgc 637
Score = 40.1 bits (20), Expect = 0.19
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 1189 gtacctgcccgggcggccgc 1208
||||||||||||||||||||
Sbjct: 625 gtacctgcccgggcggccgc 644
>gb|CV242604.1|CV242604 WS02515.B21_I09 PT-MB-N-A-15 Populus trichocarpa cDNA clone
WS02515_I09 3', mRNA sequence
Length = 904
Score = 40.1 bits (20), Expect = 0.19
Identities = 26/28 (92%)
Strand = Plus / Minus
Query: 1102 atggaaatgtaaatggagccgtggaaac 1129
|||| |||||||||||||| ||||||||
Sbjct: 846 atgggaatgtaaatggagctgtggaaac 819
Database: Populus_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:49 PM
Number of letters in database: 203,408,664
Number of sequences in database: 369,679
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 186,326
Number of Sequences: 369679
Number of extensions: 186326
Number of successful extensions: 54051
Number of sequences better than 0.5: 13
Number of HSP's better than 0.5 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 54026
Number of HSP's gapped (non-prelim): 25
length of query: 1208
length of database: 203,408,664
effective HSP length: 19
effective length of query: 1189
effective length of database: 196,384,763
effective search space: 233501483207
effective search space used: 233501483207
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)