BLASTN 2.2.10 [Oct-19-2004]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 3191506.2.1
         (1208 letters)

Database: Populus_nucl_with_EST.fasta 
           369,679 sequences; 203,408,664 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|DT510837.1|DT510837  WS02427.BR_M17 PTxD-ICC-N-A-14 Popul...   117   1e-024
gb|DT515522.1|DT515522  WS02427.B21_M17 PTxD-ICC-N-A-14 Popu...   117   1e-024
gb|CA929288.1|CA929288  MTU2CA.P11.F04 Aspen apex cDNA Libra...    46   0.003
gb|CA930206.1|CA930206  MTU2CA.P8.E10 Aspen apex cDNA Librar...    46   0.003
gb|CF230845.1|CF230845  PtaC0014A2A0202 Poplar cDNA library ...    46   0.003
gb|CV263738.1|CV263738  WS02022.B21_K12 PTxN-IB-N-A-11 Popul...    42   0.049
gb|AY124702.1|  Populus alba glycosyl transferase protein A ...    42   0.049
gb|AY278316.1|  Populus alba ecotype 6K3 glycosyl transferas...    42   0.049
gb|AY278315.1|  Populus alba ecotype 2AS11 glycosyl transfer...    42   0.049
gb|AJ534481.1|AJ534481  AJ534481 Populus euphratica root and...    40   0.19 
gb|CA933471.1|CA933471  MTU5CS.P8.E06 Aspen stem cDNA Librar...    40   0.19 
gb|CF118925.1|CF118925  MTU10CS.P11.C02 Aspen stem cDNA Libr...    40   0.19 
gb|CV242604.1|CV242604  WS02515.B21_I09 PT-MB-N-A-15 Populus...    40   0.19 
>gb|DT510837.1|DT510837 WS02427.BR_M17 PTxD-ICC-N-A-14 Populus trichocarpa x Populus
           deltoides cDNA clone WS02427_M17 5', mRNA sequence
          Length = 394

 Score =  117 bits (59), Expect = 1e-024
 Identities = 218/271 (80%)
 Strand = Plus / Plus

                                                                       
Query: 444 agagcaatgcttcagtcagcagatgagcaggtccggagcttgaagaagcagagcaccttc 503
           ||||||||||||||  |||||||||| || ||  ||||||| || || |||||||| |||
Sbjct: 59  agagcaatgcttcaaacagcagatgaacaagttaggagcttaaaaaaacagagcacattc 118

                                                                       
Query: 504 cttagccagctagcagctaagacaatcccaaatggcatccattgtctttccatgcgctta 563
           || || || || || || || ||| | || ||||| ||||||||  | || |||||| ||
Sbjct: 119 ctgagtcaactggctgccaaaacagttcctaatggaatccattgcttgtctatgcgccta 178

                                                                       
Query: 564 acgattgattattatcttctctctccagagaaaagaaagttcccaaatagtgagaacctg 623
           || ||||| || || || ||  |||  ||||| |||||||| || |  |||||| |  ||
Sbjct: 179 acaattgactactacctccttcctcttgagaagagaaagtttcctagaagtgaggatttg 238

                                                                       
Query: 624 gaaaatcctgatctttaccattatgctcttttctcggacaatgttttggcagcatcagtt 683
           ||||||||  ||||||| |||||||| || ||||| |||||||| ||||| |||||||||
Sbjct: 239 gaaaatccaaatctttatcattatgccctcttctctgacaatgtcttggctgcatcagtt 298

                                          
Query: 684 gtggtcaactcaaccatcatgaatgctaagg 714
           || ||||||||||||||||||||||| ||||
Sbjct: 299 gttgtcaactcaaccatcatgaatgccaagg 329
>gb|DT515522.1|DT515522 WS02427.B21_M17 PTxD-ICC-N-A-14 Populus trichocarpa x Populus
           deltoides cDNA clone WS02427_M17 3', mRNA sequence
          Length = 394

 Score =  117 bits (59), Expect = 1e-024
 Identities = 218/271 (80%)
 Strand = Plus / Minus

                                                                       
Query: 444 agagcaatgcttcagtcagcagatgagcaggtccggagcttgaagaagcagagcaccttc 503
           ||||||||||||||  |||||||||| || ||  ||||||| || || |||||||| |||
Sbjct: 336 agagcaatgcttcaaacagcagatgaacaagttaggagcttaaaaaaacagagcacattc 277

                                                                       
Query: 504 cttagccagctagcagctaagacaatcccaaatggcatccattgtctttccatgcgctta 563
           || || || || || || || ||| | || ||||| ||||||||  | || |||||| ||
Sbjct: 276 ctgagtcaactggctgccaaaacagttcctaatggaatccattgcttgtctatgcgccta 217

                                                                       
Query: 564 acgattgattattatcttctctctccagagaaaagaaagttcccaaatagtgagaacctg 623
           || ||||| || || || ||  |||  ||||| |||||||| || |  |||||| |  ||
Sbjct: 216 acaattgactactacctccttcctcttgagaagagaaagtttcctagaagtgaggatttg 157

                                                                       
Query: 624 gaaaatcctgatctttaccattatgctcttttctcggacaatgttttggcagcatcagtt 683
           ||||||||  ||||||| |||||||| || ||||| |||||||| ||||| |||||||||
Sbjct: 156 gaaaatccaaatctttatcattatgccctcttctctgacaatgtcttggctgcatcagtt 97

                                          
Query: 684 gtggtcaactcaaccatcatgaatgctaagg 714
           || ||||||||||||||||||||||| ||||
Sbjct: 96  gttgtcaactcaaccatcatgaatgccaagg 66
>gb|CA929288.1|CA929288 MTU2CA.P11.F04 Aspen apex cDNA Library Populus tremuloides cDNA,
           mRNA sequence
          Length = 625

 Score = 46.1 bits (23), Expect = 0.003
 Identities = 41/47 (87%)
 Strand = Plus / Minus

                                                          
Query: 654 ttctcggacaatgttttggcagcatcagttgtggtcaactcaaccat 700
           |||||||| ||||||||||||||| |||| || || ||||| |||||
Sbjct: 290 ttctcggataatgttttggcagcagcagtggttgtaaactccaccat 244
>gb|CA930206.1|CA930206 MTU2CA.P8.E10 Aspen apex cDNA Library Populus tremuloides cDNA,
           mRNA sequence
          Length = 625

 Score = 46.1 bits (23), Expect = 0.003
 Identities = 41/47 (87%)
 Strand = Plus / Minus

                                                          
Query: 654 ttctcggacaatgttttggcagcatcagttgtggtcaactcaaccat 700
           |||||||| ||||||||||||||| |||| || || ||||| |||||
Sbjct: 290 ttctcggataatgttttggcagcagcagtggttgtaaactccaccat 244
>gb|CF230845.1|CF230845 PtaC0014A2A0202 Poplar cDNA library from cambial zone Populus alba
           x Populus tremula cDNA 5', mRNA sequence
          Length = 474

 Score = 46.1 bits (23), Expect = 0.003
 Identities = 41/47 (87%)
 Strand = Plus / Plus

                                                          
Query: 654 ttctcggacaatgttttggcagcatcagttgtggtcaactcaaccat 700
           |||||||| ||||||||||||||| |||| || || ||||| |||||
Sbjct: 257 ttctcggataatgttttggcagcagcagtggttgtaaactccaccat 303
>gb|CV263738.1|CV263738 WS02022.B21_K12 PTxN-IB-N-A-11 Populus trichocarpa x Populus nigra
            cDNA clone WS02022_K12 3', mRNA sequence
          Length = 937

 Score = 42.1 bits (21), Expect = 0.049
 Identities = 36/41 (87%)
 Strand = Plus / Minus

                                                     
Query: 963  aacccaaaatatttgtccatgctcaatcatctaagatttta 1003
            |||||||||||| | |||||||| ||||| || ||||||||
Sbjct: 795  aacccaaaatatctatccatgcttaatcacctcagatttta 755
>gb|AY124702.1| Populus alba glycosyl transferase protein A gene, partial cds
          Length = 808

 Score = 42.1 bits (21), Expect = 0.049
 Identities = 36/41 (87%)
 Strand = Plus / Plus

                                                     
Query: 963  aacccaaaatatttgtccatgctcaatcatctaagatttta 1003
            |||||||||||| | |||||||| ||||| || ||||||||
Sbjct: 546  aacccaaaatatctatccatgcttaatcacctcagatttta 586
>gb|AY278316.1| Populus alba ecotype 6K3 glycosyl transferase protein A gene, partial
            cds
          Length = 804

 Score = 42.1 bits (21), Expect = 0.049
 Identities = 36/41 (87%)
 Strand = Plus / Plus

                                                     
Query: 963  aacccaaaatatttgtccatgctcaatcatctaagatttta 1003
            |||||||||||| | |||||||| ||||| || ||||||||
Sbjct: 544  aacccaaaatatctatccatgcttaatcacctcagatttta 584
>gb|AY278315.1| Populus alba ecotype 2AS11 glycosyl transferase protein A gene,
            partial cds
          Length = 804

 Score = 42.1 bits (21), Expect = 0.049
 Identities = 36/41 (87%)
 Strand = Plus / Plus

                                                     
Query: 963  aacccaaaatatttgtccatgctcaatcatctaagatttta 1003
            |||||||||||| | |||||||| ||||| || ||||||||
Sbjct: 544  aacccaaaatatctatccatgcttaatcacctcagatttta 584
>gb|AJ534481.1|AJ534481 AJ534481 Populus euphratica root and shoot Populus euphratica cDNA
            clone 46, mRNA sequence
          Length = 574

 Score = 40.1 bits (20), Expect = 0.19
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 1189 gtacctgcccgggcggccgc 1208
            ||||||||||||||||||||
Sbjct: 479  gtacctgcccgggcggccgc 498
>gb|CA933471.1|CA933471 MTU5CS.P8.E06 Aspen stem cDNA Library Populus tremuloides cDNA, mRNA
            sequence
          Length = 606

 Score = 40.1 bits (20), Expect = 0.19
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 1189 gtacctgcccgggcggccgc 1208
            ||||||||||||||||||||
Sbjct: 289  gtacctgcccgggcggccgc 270
>gb|CF118925.1|CF118925 MTU10CS.P11.C02 Aspen stem cDNA Library Populus tremuloides cDNA,
            mRNA sequence
          Length = 786

 Score = 40.1 bits (20), Expect = 0.19
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 1189 gtacctgcccgggcggccgc 1208
            ||||||||||||||||||||
Sbjct: 656  gtacctgcccgggcggccgc 637

 Score = 40.1 bits (20), Expect = 0.19
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 1189 gtacctgcccgggcggccgc 1208
            ||||||||||||||||||||
Sbjct: 625  gtacctgcccgggcggccgc 644
>gb|CV242604.1|CV242604 WS02515.B21_I09 PT-MB-N-A-15 Populus trichocarpa cDNA clone
            WS02515_I09 3', mRNA sequence
          Length = 904

 Score = 40.1 bits (20), Expect = 0.19
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                        
Query: 1102 atggaaatgtaaatggagccgtggaaac 1129
            |||| |||||||||||||| ||||||||
Sbjct: 846  atgggaatgtaaatggagctgtggaaac 819
  Database: Populus_nucl_with_EST.fasta
    Posted date:  Feb 7, 2006  2:49 PM
  Number of letters in database: 203,408,664
  Number of sequences in database:  369,679
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 186,326
Number of Sequences: 369679
Number of extensions: 186326
Number of successful extensions: 54051
Number of sequences better than  0.5: 13
Number of HSP's better than  0.5 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 54026
Number of HSP's gapped (non-prelim): 25
length of query: 1208
length of database: 203,408,664
effective HSP length: 19
effective length of query: 1189
effective length of database: 196,384,763
effective search space: 233501483207
effective search space used: 233501483207
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)