BLASTN 2.2.10 [Oct-19-2004]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 3115184.2.1
         (642 letters)

Database: Populus_nucl_with_EST.fasta 
           369,679 sequences; 203,408,664 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|BU870115.1|BU870115  Q008I07 Populus flower cDNA library ...    40   0.10 
gb|CK111061.1|CK111061  Q008E04 Populus dormant bud cDNA lib...    40   0.10 
gb|DN496706.1|DN496706  Q008G11.5pR Populus dormant bud cDNA...    40   0.10 

>gb|BU870115.1|BU870115 Q008I07 Populus flower cDNA library Populus trichocarpa cDNA 5
           prime, mRNA sequence
          Length = 613

 Score = 40.1 bits (20), Expect = 0.10
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 506 cctctctctttctcactctc 525
           ||||||||||||||||||||
Sbjct: 80  cctctctctttctcactctc 99



>gb|CK111061.1|CK111061 Q008E04 Populus dormant bud cDNA library Populus tremula cDNA clone
           Q008E04 5', mRNA sequence
          Length = 607

 Score = 40.1 bits (20), Expect = 0.10
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 506 cctctctctttctcactctc 525
           ||||||||||||||||||||
Sbjct: 79  cctctctctttctcactctc 98



>gb|DN496706.1|DN496706 Q008G11.5pR Populus dormant bud cDNA library Populus tremula cDNA
           clone Q008G11 5', mRNA sequence
          Length = 728

 Score = 40.1 bits (20), Expect = 0.10
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 506 cctctctctttctcactctc 525
           ||||||||||||||||||||
Sbjct: 73  cctctctctttctcactctc 92



  Database: Populus_nucl_with_EST.fasta
    Posted date:  Feb 7, 2006  2:49 PM
  Number of letters in database: 203,408,664
  Number of sequences in database:  369,679
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 58,313
Number of Sequences: 369679
Number of extensions: 58313
Number of successful extensions: 17702
Number of sequences better than  0.5: 3
Number of HSP's better than  0.5 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 17699
Number of HSP's gapped (non-prelim): 3
length of query: 642
length of database: 203,408,664
effective HSP length: 19
effective length of query: 623
effective length of database: 196,384,763
effective search space: 122347707349
effective search space used: 122347707349
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)