BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 3106160.2.1
(788 letters)
Database: Populus_nucl_with_EST.fasta
369,679 sequences; 203,408,664 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CV273173.1|CV273173 WS0171.B21_O12 PTxD-NR-A-8 Populus t... 143 1e-032
gb|CV277808.1|CV277808 WS0144.B21_K01 PTxD-IL-A-5 Populus t... 143 1e-032
gb|CX181689.1|CX181689 B02_45-51_04.ab1 leaf inoculated wit... 135 3e-030
gb|CX181624.1|CX181624 F11_45-64_11.ab1 leaf inoculated wit... 127 7e-028
gb|CK091141.1|CK091141 F051P02.3pR Populus flower cDNA libr... 111 4e-023
gb|DT484580.1|DT484580 WS02525.B21_N02 PT-MB-N-A-15 Populus... 111 4e-023
gb|BI129375.1|BI129375 G089P89Y Populus cambium cDNA librar... 103 1e-020
gb|CK102745.1|CK102745 G089P89.5pR Populus tension wood cDN... 103 1e-020
gb|DT519937.1|DT519937 WS02446.B21.1_B16 PTxD-ICC-N-A-14 Po... 100 2e-019
gb|CX179313.1|CX179313 D03_45-72_07.ab1 leaf inoculated wit... 98 6e-019
gb|DN501916.1|DN501916 V037F03.5pR Populus male catkins cDN... 54 8e-006
gb|DN491968.1|DN491968 V037F03.3pR Populus male catkins cDN... 52 3e-005
gb|BI121179.1|BI121179 F030P42Y Populus flower cDNA library... 42 0.032
gb|BI120715.1|BI120715 F021P55Y Populus flower cDNA library... 40 0.12
gb|BU816198.1|BU816198 N061G06 Populus bark cDNA library Po... 40 0.12
gb|BU822798.1|BU822798 UB43DPF02 Populus tremula cambium cD... 40 0.12
gb|BU823978.1|BU823978 UB58DPH02 Populus tremula cambium cD... 40 0.12
gb|CF230959.1|CF230959 PtaC0015F1F0111 Poplar cDNA library ... 40 0.12
gb|CF235124.1|CF235124 PtaJXT0019B6B0604 Poplar cDNA librar... 40 0.12
gb|CK088201.1|CK088201 A043P46.3pR Hybrid aspen plasmid lib... 40 0.12
gb|CK317746.1|CK317746 B9P01c08 Populus stem seasonal libra... 40 0.12
gb|CK320011.1|CK320011 L1P10g08 Populus stem seasonal libra... 40 0.12
gb|CV131485.1|CV131485 L2P07f09 Populus stem seasonal libra... 40 0.12
gb|CV227675.1|CV227675 WS0167.B21_O06 PT-DX-A-7 Populus tri... 40 0.12
gb|CV230945.1|CV230945 WS0193.B21_B07 PT-DX-N-A-10 Populus ... 40 0.12
gb|CV235782.1|CV235782 WS01221.B21_I24 PT-GT-FL-A-3 Populus... 40 0.12
gb|CV256158.1|CV256158 WS0243.B21_B11 PTxD-ICC-N-A-14 Popul... 40 0.12
gb|CV266583.1|CV266583 WS0203.B21_G20 PTxN-IB-N-A-11 Populu... 40 0.12
gb|CV267541.1|CV267541 WS02032.B21_A11 PTxN-IB-N-A-11 Popul... 40 0.12
gb|CV271425.1|CV271425 WS0154.B21_K19 PTxN-IB-A-6 Populus t... 40 0.12
gb|DT477555.1|DT477555 WS02520.BR_E19 PT-MB-N-A-15 Populus ... 40 0.12
gb|DT480843.1|DT480843 WS02530.BR_B13 PT-MB-N-A-15 Populus ... 40 0.12
gb|DT482016.1|DT482016 WS02533.BR_K04 PT-MB-N-A-15 Populus ... 40 0.12
gb|DT486123.1|DT486123 WS02530.B21_B13 PT-MB-N-A-15 Populus... 40 0.12
gb|DT486251.1|DT486251 WS02530.B21_H07 PT-MB-N-A-15 Populus... 40 0.12
gb|DT487415.1|DT487415 WS02533.B21_K04 PT-MB-N-A-15 Populus... 40 0.12
gb|DT490986.1|DT490986 WS02546.C21.1_H24 PT-MB-N-A-15 Popul... 40 0.12
gb|DT491203.1|DT491203 WS02547.C21_B10 PT-MB-N-A-15 Populus... 40 0.12
gb|DT492241.1|DT492241 WS02550.C21_A18 PT-MB-N-A-15 Populus... 40 0.12
gb|DT510937.1|DT510937 WS02429.BR_B20 PTxD-ICC-N-A-14 Popul... 40 0.12
gb|DT511673.1|DT511673 WS02417.B21_B16 PTxD-ICC-N-A-14 Popu... 40 0.12
gb|DT515638.1|DT515638 WS02429.B21.1_B20 PTxD-ICC-N-A-14 Po... 40 0.12
gb|DT518820.1|DT518820 WS02439.B21_F24 PTxD-ICC-N-A-14 Popu... 40 0.12
gb|DT519933.1|DT519933 WS02446.B21.1_B12 PTxD-ICC-N-A-14 Po... 40 0.12
gb|DT520293.1|DT520293 WS02447.B21_C08 PTxD-ICC-N-A-14 Popu... 40 0.12
gb|DT522869.1|DT522869 WS02038.B21_C14 PTxN-IB-N-A-11 Popul... 40 0.12
gb|DT525407.1|DT525407 WS02045.C21_E07 PTxN-IB-N-A-11 Popul... 40 0.12
gb|CX183847.1|CX183847 B11_45-114_03.ab1 leaf inoculated wi... 38 0.49
gb|DT518776.1|DT518776 WS02439.B21_D17 PTxD-ICC-N-A-14 Popu... 38 0.49
>gb|CV273173.1|CV273173 WS0171.B21_O12 PTxD-NR-A-8 Populus trichocarpa x Populus deltoides
cDNA clone WS0171_O12 3', mRNA sequence
Length = 811
Score = 143 bits (72), Expect = 1e-032
Identities = 150/176 (85%)
Strand = Plus / Minus
Query: 1 aggctgcagttctgcattatacatacactaaattttcagatttgacatctagacgtgatc 60
||||||| ||||||||||| |||||| |||||||||| |||||||| || |||||||| |
Sbjct: 806 aggctgctgttctgcattacacataccctaaattttctgatttgacttcaagacgtgacc 747
Query: 61 gctgtggatgcaagcctacaaaagaagatgttaagagatgtttcatgttagattttgaca 120
| |||||||||||||||||||| || ||||| || ||||| |||||||| || || ||||
Sbjct: 746 ggtgtggatgcaagcctacaaaggaggatgtcaaaagatgcttcatgttggaattcgaca 687
Query: 121 gagcagcttttataattgcatcaactgctagtgaagaagaaatgcttcgctggtac 176
|||| || || |||||||| ||||| || | ||| || |||||||||| |||||||
Sbjct: 686 gagctgcattcataattgcttcaacagcaactgaggaggaaatgcttcactggtac 631
>gb|CV277808.1|CV277808 WS0144.B21_K01 PTxD-IL-A-5 Populus trichocarpa x Populus deltoides
cDNA clone WS0144_K01 3', mRNA sequence
Length = 863
Score = 143 bits (72), Expect = 1e-032
Identities = 150/176 (85%)
Strand = Plus / Minus
Query: 1 aggctgcagttctgcattatacatacactaaattttcagatttgacatctagacgtgatc 60
||||||| ||||||||||| |||||| |||||||||| |||||||| || |||||||| |
Sbjct: 804 aggctgctgttctgcattacacataccctaaattttctgatttgacttcaagacgtgacc 745
Query: 61 gctgtggatgcaagcctacaaaagaagatgttaagagatgtttcatgttagattttgaca 120
| |||||||||||||||||||| || ||||| || ||||| |||||||| || || ||||
Sbjct: 744 ggtgtggatgcaagcctacaaaggaggatgtcaaaagatgcttcatgttggaattcgaca 685
Query: 121 gagcagcttttataattgcatcaactgctagtgaagaagaaatgcttcgctggtac 176
|||| || || |||||||| ||||| || | ||| || |||||||||| |||||||
Sbjct: 684 gagctgcattcataattgcttcaacagcaactgaggaggaaatgcttcactggtac 629
>gb|CX181689.1|CX181689 B02_45-51_04.ab1 leaf inoculated with Marssonia pathogen of Populus
euramericana Populus x canadensis cDNA, mRNA sequence
Length = 712
Score = 135 bits (68), Expect = 3e-030
Identities = 144/168 (85%), Gaps = 1/168 (0%)
Strand = Plus / Plus
Query: 9 gttctgcattatacatacactaaattttcagatttgacatctagacgtgatcgctgtgga 68
||||||||||| |||||| |||||||||| |||||||| || ||||||||||| ||||||
Sbjct: 10 gttctgcattacacataccctaaattttctgatttgacttc-agacgtgatcggtgtgga 68
Query: 69 tgcaagcctacaaaagaagatgttaagagatgtttcatgttagattttgacagagcagct 128
|||||||||||||| || ||||| || ||||| |||||||| || || |||||||| ||
Sbjct: 69 tgcaagcctacaaaggaggatgtcaaaagatgcttcatgttggaattcgacagagctgca 128
Query: 129 tttataattgcatcaactgctagtgaagaagaaatgcttcgctggtac 176
|| |||||||| ||||| || | ||| || |||||||||| |||||||
Sbjct: 129 ttcataattgcttcaacagcaactgaggaggaaatgcttcactggtac 176
>gb|CX181624.1|CX181624 F11_45-64_11.ab1 leaf inoculated with Marssonia pathogen of Populus
euramericana Populus x canadensis cDNA, mRNA sequence
Length = 690
Score = 127 bits (64), Expect = 7e-028
Identities = 143/168 (85%), Gaps = 1/168 (0%)
Strand = Plus / Plus
Query: 9 gttctgcattatacatacactaaattttcagatttgacatctagacgtgatcgctgtgga 68
||||||||||| ||||| |||||||||| |||||||| || ||||||||||| ||||||
Sbjct: 3 gttctgcattac-cataccctaaattttctgatttgacttcaagacgtgatcggtgtgga 61
Query: 69 tgcaagcctacaaaagaagatgttaagagatgtttcatgttagattttgacagagcagct 128
|||||||||||||| || ||||| || ||||| |||||||| || || |||||||| ||
Sbjct: 62 tgcaagcctacaaaggaggatgtcaaaagatgcttcatgttggaattcgacagagctgca 121
Query: 129 tttataattgcatcaactgctagtgaagaagaaatgcttcgctggtac 176
|| |||||||| ||||| || | ||| || |||||||||| |||||||
Sbjct: 122 ttcataattgcttcaacagcaactgaggaggaaatgcttcactggtac 169
>gb|CK091141.1|CK091141 F051P02.3pR Populus flower cDNA library Populus trichocarpa cDNA
clone F051P02 3', mRNA sequence
Length = 681
Score = 111 bits (56), Expect = 4e-023
Identities = 125/148 (84%)
Strand = Plus / Plus
Query: 1 aggctgcagttctgcattatacatacactaaattttcagatttgacatctagacgtgatc 60
||||||| ||||| ||||| || || | |||||||| || ||||| |||||||||||||
Sbjct: 77 aggctgctgttctacattacacgtattccaaattttctgacttgacttctagacgtgatc 136
Query: 61 gctgtggatgcaagcctacaaaagaagatgttaagagatgtttcatgttagattttgaca 120
| ||||| |||||||||||||| || ||||| || ||||| || ||||| ||||||||||
Sbjct: 137 ggtgtggctgcaagcctacaaaggaggatgtcaaaagatgctttatgttggattttgaca 196
Query: 121 gagcagcttttataattgcatcaactgc 148
|| | || || |||||||||||||||||
Sbjct: 197 gatctgcattcataattgcatcaactgc 224
>gb|DT484580.1|DT484580 WS02525.B21_N02 PT-MB-N-A-15 Populus trichocarpa cDNA clone
WS02525_N02 3', mRNA sequence
Length = 920
Score = 111 bits (56), Expect = 4e-023
Identities = 125/148 (84%)
Strand = Plus / Minus
Query: 1 aggctgcagttctgcattatacatacactaaattttcagatttgacatctagacgtgatc 60
||||||| ||||| ||||| || || | |||||||| |||||||| |||||||||||||
Sbjct: 861 aggctgccgttctacattacacgtattccaaattttctgatttgacttctagacgtgatc 802
Query: 61 gctgtggatgcaagcctacaaaagaagatgttaagagatgtttcatgttagattttgaca 120
| ||||| ||||||||||| || || ||||| || ||||| || ||||| ||||||||||
Sbjct: 801 ggtgtggctgcaagcctactaaggaggatgtcaaaagatgctttatgttggattttgaca 742
Query: 121 gagcagcttttataattgcatcaactgc 148
|| | || || |||||||||||||||||
Sbjct: 741 gatctgccttcataattgcatcaactgc 714
>gb|BI129375.1|BI129375 G089P89Y Populus cambium cDNA library Populus tremula x Populus
tremuloides cDNA, mRNA sequence
Length = 496
Score = 103 bits (52), Expect = 1e-020
Identities = 125/148 (84%), Gaps = 1/148 (0%)
Strand = Plus / Plus
Query: 1 aggctgcagttctgcattatacatacactaaattttcagatttgacatctagacgtgatc 60
||||||| ||||| ||||| || || || |||||||| |||||||| |||||||||||||
Sbjct: 8 aggctgctgttctacattacacgta-accaaattttctgatttgacttctagacgtgatc 66
Query: 61 gctgtggatgcaagcctacaaaagaagatgttaagagatgtttcatgttagattttgaca 120
| ||||| ||||||||||| | || ||||| || ||||| || ||||| ||||||||||
Sbjct: 67 ggtgtggctgcaagcctaccacggaggatgtcaaaagatgctttatgttggattttgaca 126
Query: 121 gagcagcttttataattgcatcaactgc 148
|| | || || |||||||||||||||||
Sbjct: 127 gatctgccttcataattgcatcaactgc 154
>gb|CK102745.1|CK102745 G089P89.5pR Populus tension wood cDNA library Populus tremula x
Populus tremuloides cDNA clone G089P89 5', mRNA sequence
Length = 583
Score = 103 bits (52), Expect = 1e-020
Identities = 124/148 (83%)
Strand = Plus / Plus
Query: 1 aggctgcagttctgcattatacatacactaaattttcagatttgacatctagacgtgatc 60
||||||| ||||| ||||| || || | |||||||| |||||||| |||||||||||||
Sbjct: 8 aggctgctgttctacattacacgtattccaaattttctgatttgacttctagacgtgatc 67
Query: 61 gctgtggatgcaagcctacaaaagaagatgttaagagatgtttcatgttagattttgaca 120
| ||||| ||||||||||| | || ||||| || ||||| || ||||| ||||||||||
Sbjct: 68 ggtgtggctgcaagcctaccacggaggatgtcaaaagatgctttatgttggattttgaca 127
Query: 121 gagcagcttttataattgcatcaactgc 148
|| | || || |||||||||||||||||
Sbjct: 128 gatctgccttcataattgcatcaactgc 155
>gb|DT519937.1|DT519937 WS02446.B21.1_B16 PTxD-ICC-N-A-14 Populus trichocarpa x Populus
deltoides cDNA clone WS02446_B16 3', mRNA sequence
Length = 910
Score = 99.6 bits (50), Expect = 2e-019
Identities = 117/138 (84%), Gaps = 1/138 (0%)
Strand = Plus / Minus
Query: 39 gatttgacatctagacgtgatcgctgtggatgcaagcctacaaaagaagatgttaagaga 98
|||||||| || ||||||||||| ||||||||||||||||||||||| ||||| || |||
Sbjct: 910 gatttgacttcaagacgtgatcggtgtggatgcaagcctacaaaagaggatgtcaaaaga 851
Query: 99 tgtttcatgttagattttgacagagcagcttttataattgcatcaactgctagtgaagaa 158
|| |||||| | || || |||||||| || || |||||||| ||||| || | ||| ||
Sbjct: 850 tgcttcatg-tggaattcgacagagctgcattcataattgcttcaacagcaactgaggag 792
Query: 159 gaaatgcttcgctggtac 176
|||||||||| |||||||
Sbjct: 791 gaaatgcttcactggtac 774
>gb|CX179313.1|CX179313 D03_45-72_07.ab1 leaf inoculated with Marssonia pathogen of Populus
euramericana Populus x canadensis cDNA, mRNA sequence
Length = 634
Score = 97.6 bits (49), Expect = 6e-019
Identities = 106/125 (84%)
Strand = Plus / Plus
Query: 52 gacgtgatcgctgtggatgcaagcctacaaaagaagatgttaagagatgtttcatgttag 111
|||||||||| |||||||||||||||||||| || ||||| || ||||| |||||||| |
Sbjct: 1 gacgtgatcggtgtggatgcaagcctacaaaggaggatgtcaaaagatgcttcatgttgg 60
Query: 112 attttgacagagcagcttttataattgcatcaactgctagtgaagaagaaatgcttcgct 171
| || |||||||| || || |||||||| ||||| || | ||| || |||||||||| ||
Sbjct: 61 aattcgacagagctgcattcataattgcttcaacagcaactgaggaggaaatgcttcact 120
Query: 172 ggtac 176
|||||
Sbjct: 121 ggtac 125
>gb|DN501916.1|DN501916 V037F03.5pR Populus male catkins cDNA library Populus trichocarpa
cDNA clone V037F03 5', mRNA sequence
Length = 663
Score = 54.0 bits (27), Expect = 8e-006
Identities = 57/67 (85%)
Strand = Plus / Plus
Query: 1 aggctgcagttctgcattatacatacactaaattttcagatttgacatctagacgtgatc 60
||||||| ||||| ||||| || || | |||||||| |||||||| |||||||||||||
Sbjct: 593 aggctgccgttctacattacacgtattccaaattttctgatttgacttctagacgtgatc 652
Query: 61 gctgtgg 67
| |||||
Sbjct: 653 ggtgtgg 659
>gb|DN491968.1|DN491968 V037F03.3pR Populus male catkins cDNA library Populus trichocarpa
cDNA clone V037F03 3', mRNA sequence
Length = 727
Score = 52.0 bits (26), Expect = 3e-005
Identities = 53/62 (85%)
Strand = Plus / Minus
Query: 87 gatgttaagagatgtttcatgttagattttgacagagcagcttttataattgcatcaact 146
||||| || ||||| || ||||| |||||||||||| | || || |||||||||||||||
Sbjct: 715 gatgtcaaaagatgctttatgttggattttgacagatctgccttcataattgcatcaact 656
Query: 147 gc 148
||
Sbjct: 655 gc 654
>gb|BI121179.1|BI121179 F030P42Y Populus flower cDNA library Populus trichocarpa cDNA, mRNA
sequence
Length = 377
Score = 42.1 bits (21), Expect = 0.032
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 559 atatatatattttttgctcgg 579
|||||||||||||||||||||
Sbjct: 350 atatatatattttttgctcgg 330
>gb|BI120715.1|BI120715 F021P55Y Populus flower cDNA library Populus trichocarpa cDNA, mRNA
sequence
Length = 225
Score = 40.1 bits (20), Expect = 0.12
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 560 tatatatattttttgctcgg 579
||||||||||||||||||||
Sbjct: 24 tatatatattttttgctcgg 43
>gb|BU816198.1|BU816198 N061G06 Populus bark cDNA library Populus tremula x Populus
tremuloides cDNA 5 prime, mRNA sequence
Length = 556
Score = 40.1 bits (20), Expect = 0.12
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 560 tatatatattttttgctcgg 579
||||||||||||||||||||
Sbjct: 548 tatatatattttttgctcgg 529
>gb|BU822798.1|BU822798 UB43DPF02 Populus tremula cambium cDNA library Populus tremula cDNA
5 prime, mRNA sequence
Length = 165
Score = 40.1 bits (20), Expect = 0.12
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 560 tatatatattttttgctcgg 579
||||||||||||||||||||
Sbjct: 143 tatatatattttttgctcgg 124
>gb|BU823978.1|BU823978 UB58DPH02 Populus tremula cambium cDNA library Populus tremula cDNA
5 prime, mRNA sequence
Length = 91
Score = 40.1 bits (20), Expect = 0.12
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 560 tatatatattttttgctcgg 579
||||||||||||||||||||
Sbjct: 69 tatatatattttttgctcgg 50
>gb|CF230959.1|CF230959 PtaC0015F1F0111 Poplar cDNA library from cambial zone Populus alba
x Populus tremula cDNA 5', mRNA sequence
Length = 282
Score = 40.1 bits (20), Expect = 0.12
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 560 tatatatattttttgctcgg 579
||||||||||||||||||||
Sbjct: 235 tatatatattttttgctcgg 216
>gb|CF235124.1|CF235124 PtaJXT0019B6B0604 Poplar cDNA library from young tension xylem
Populus alba x Populus tremula cDNA 5', mRNA sequence
Length = 469
Score = 40.1 bits (20), Expect = 0.12
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 560 tatatatattttttgctcgg 579
||||||||||||||||||||
Sbjct: 418 tatatatattttttgctcgg 399
>gb|CK088201.1|CK088201 A043P46.3pR Hybrid aspen plasmid library Populus tremula x Populus
tremuloides cDNA clone A043P46 3', mRNA sequence
Length = 773
Score = 40.1 bits (20), Expect = 0.12
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 560 tatatatattttttgctcgg 579
||||||||||||||||||||
Sbjct: 42 tatatatattttttgctcgg 61
>gb|CK317746.1|CK317746 B9P01c08 Populus stem seasonal library Populus deltoides cDNA, mRNA
sequence
Length = 391
Score = 40.1 bits (20), Expect = 0.12
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 560 tatatatattttttgctcgg 579
||||||||||||||||||||
Sbjct: 366 tatatatattttttgctcgg 347
>gb|CK320011.1|CK320011 L1P10g08 Populus stem seasonal library Populus deltoides cDNA, mRNA
sequence
Length = 319
Score = 40.1 bits (20), Expect = 0.12
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 560 tatatatattttttgctcgg 579
||||||||||||||||||||
Sbjct: 294 tatatatattttttgctcgg 275
>gb|CV131485.1|CV131485 L2P07f09 Populus stem seasonal library Populus deltoides cDNA, mRNA
sequence
Length = 290
Score = 40.1 bits (20), Expect = 0.12
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 560 tatatatattttttgctcgg 579
||||||||||||||||||||
Sbjct: 271 tatatatattttttgctcgg 252
>gb|CV227675.1|CV227675 WS0167.B21_O06 PT-DX-A-7 Populus trichocarpa cDNA clone WS0167_O06
3', mRNA sequence
Length = 589
Score = 40.1 bits (20), Expect = 0.12
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 560 tatatatattttttgctcgg 579
||||||||||||||||||||
Sbjct: 575 tatatatattttttgctcgg 556
>gb|CV230945.1|CV230945 WS0193.B21_B07 PT-DX-N-A-10 Populus trichocarpa cDNA clone
WS0193_B07 3', mRNA sequence
Length = 914
Score = 40.1 bits (20), Expect = 0.12
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 560 tatatatattttttgctcgg 579
||||||||||||||||||||
Sbjct: 34 tatatatattttttgctcgg 53
>gb|CV235782.1|CV235782 WS01221.B21_I24 PT-GT-FL-A-3 Populus trichocarpa cDNA clone
WS01221_I24 3', mRNA sequence
Length = 728
Score = 40.1 bits (20), Expect = 0.12
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 560 tatatatattttttgctcgg 579
||||||||||||||||||||
Sbjct: 32 tatatatattttttgctcgg 51
>gb|CV256158.1|CV256158 WS0243.B21_B11 PTxD-ICC-N-A-14 Populus trichocarpa x Populus
deltoides cDNA clone WS0243_B11 3', mRNA sequence
Length = 682
Score = 40.1 bits (20), Expect = 0.12
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 560 tatatatattttttgctcgg 579
||||||||||||||||||||
Sbjct: 42 tatatatattttttgctcgg 61
>gb|CV266583.1|CV266583 WS0203.B21_G20 PTxN-IB-N-A-11 Populus trichocarpa x Populus nigra
cDNA clone WS0203_G20 3', mRNA sequence
Length = 459
Score = 40.1 bits (20), Expect = 0.12
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 560 tatatatattttttgctcgg 579
||||||||||||||||||||
Sbjct: 36 tatatatattttttgctcgg 55
>gb|CV267541.1|CV267541 WS02032.B21_A11 PTxN-IB-N-A-11 Populus trichocarpa x Populus nigra
cDNA clone WS02032_A11 3', mRNA sequence
Length = 414
Score = 40.1 bits (20), Expect = 0.12
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 560 tatatatattttttgctcgg 579
||||||||||||||||||||
Sbjct: 49 tatatatattttttgctcgg 68
>gb|CV271425.1|CV271425 WS0154.B21_K19 PTxN-IB-A-6 Populus trichocarpa x Populus nigra cDNA
clone WS0154_K19 3', mRNA sequence
Length = 494
Score = 40.1 bits (20), Expect = 0.12
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 560 tatatatattttttgctcgg 579
||||||||||||||||||||
Sbjct: 36 tatatatattttttgctcgg 55
>gb|DT477555.1|DT477555 WS02520.BR_E19 PT-MB-N-A-15 Populus trichocarpa cDNA clone
WS02520_E19 5', mRNA sequence
Length = 803
Score = 40.1 bits (20), Expect = 0.12
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 560 tatatatattttttgctcgg 579
||||||||||||||||||||
Sbjct: 782 tatatatattttttgctcgg 763
>gb|DT480843.1|DT480843 WS02530.BR_B13 PT-MB-N-A-15 Populus trichocarpa cDNA clone
WS02530_B13 5', mRNA sequence
Length = 524
Score = 40.1 bits (20), Expect = 0.12
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 560 tatatatattttttgctcgg 579
||||||||||||||||||||
Sbjct: 483 tatatatattttttgctcgg 464
>gb|DT482016.1|DT482016 WS02533.BR_K04 PT-MB-N-A-15 Populus trichocarpa cDNA clone
WS02533_K04 5', mRNA sequence
Length = 785
Score = 40.1 bits (20), Expect = 0.12
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 560 tatatatattttttgctcgg 579
||||||||||||||||||||
Sbjct: 738 tatatatattttttgctcgg 719
>gb|DT486123.1|DT486123 WS02530.B21_B13 PT-MB-N-A-15 Populus trichocarpa cDNA clone
WS02530_B13 3', mRNA sequence
Length = 524
Score = 40.1 bits (20), Expect = 0.12
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 560 tatatatattttttgctcgg 579
||||||||||||||||||||
Sbjct: 42 tatatatattttttgctcgg 61
>gb|DT486251.1|DT486251 WS02530.B21_H07 PT-MB-N-A-15 Populus trichocarpa cDNA clone
WS02530_H07 3', mRNA sequence
Length = 819
Score = 40.1 bits (20), Expect = 0.12
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 560 tatatatattttttgctcgg 579
||||||||||||||||||||
Sbjct: 42 tatatatattttttgctcgg 61
>gb|DT487415.1|DT487415 WS02533.B21_K04 PT-MB-N-A-15 Populus trichocarpa cDNA clone
WS02533_K04 3', mRNA sequence
Length = 783
Score = 40.1 bits (20), Expect = 0.12
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 560 tatatatattttttgctcgg 579
||||||||||||||||||||
Sbjct: 46 tatatatattttttgctcgg 65
>gb|DT490986.1|DT490986 WS02546.C21.1_H24 PT-MB-N-A-15 Populus trichocarpa cDNA clone
WS02546_H24 3', mRNA sequence
Length = 895
Score = 40.1 bits (20), Expect = 0.12
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 560 tatatatattttttgctcgg 579
||||||||||||||||||||
Sbjct: 39 tatatatattttttgctcgg 58
>gb|DT491203.1|DT491203 WS02547.C21_B10 PT-MB-N-A-15 Populus trichocarpa cDNA clone
WS02547_B10 3', mRNA sequence
Length = 846
Score = 40.1 bits (20), Expect = 0.12
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 560 tatatatattttttgctcgg 579
||||||||||||||||||||
Sbjct: 42 tatatatattttttgctcgg 61
>gb|DT492241.1|DT492241 WS02550.C21_A18 PT-MB-N-A-15 Populus trichocarpa cDNA clone
WS02550_A18 3', mRNA sequence
Length = 795
Score = 40.1 bits (20), Expect = 0.12
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 560 tatatatattttttgctcgg 579
||||||||||||||||||||
Sbjct: 77 tatatatattttttgctcgg 96
>gb|DT510937.1|DT510937 WS02429.BR_B20 PTxD-ICC-N-A-14 Populus trichocarpa x Populus
deltoides cDNA clone WS02429_B20 5', mRNA sequence
Length = 249
Score = 40.1 bits (20), Expect = 0.12
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 560 tatatatattttttgctcgg 579
||||||||||||||||||||
Sbjct: 208 tatatatattttttgctcgg 189
>gb|DT511673.1|DT511673 WS02417.B21_B16 PTxD-ICC-N-A-14 Populus trichocarpa x Populus
deltoides cDNA clone WS02417_B16 3', mRNA sequence
Length = 811
Score = 40.1 bits (20), Expect = 0.12
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 560 tatatatattttttgctcgg 579
||||||||||||||||||||
Sbjct: 42 tatatatattttttgctcgg 61
>gb|DT515638.1|DT515638 WS02429.B21.1_B20 PTxD-ICC-N-A-14 Populus trichocarpa x Populus
deltoides cDNA clone WS02429_B20 3', mRNA sequence
Length = 249
Score = 40.1 bits (20), Expect = 0.12
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 560 tatatatattttttgctcgg 579
||||||||||||||||||||
Sbjct: 42 tatatatattttttgctcgg 61
>gb|DT518820.1|DT518820 WS02439.B21_F24 PTxD-ICC-N-A-14 Populus trichocarpa x Populus
deltoides cDNA clone WS02439_F24 3', mRNA sequence
Length = 314
Score = 40.1 bits (20), Expect = 0.12
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 560 tatatatattttttgctcgg 579
||||||||||||||||||||
Sbjct: 41 tatatatattttttgctcgg 60
>gb|DT519933.1|DT519933 WS02446.B21.1_B12 PTxD-ICC-N-A-14 Populus trichocarpa x Populus
deltoides cDNA clone WS02446_B12 3', mRNA sequence
Length = 301
Score = 40.1 bits (20), Expect = 0.12
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 560 tatatatattttttgctcgg 579
||||||||||||||||||||
Sbjct: 42 tatatatattttttgctcgg 61
>gb|DT520293.1|DT520293 WS02447.B21_C08 PTxD-ICC-N-A-14 Populus trichocarpa x Populus
deltoides cDNA clone WS02447_C08 3', mRNA sequence
Length = 428
Score = 40.1 bits (20), Expect = 0.12
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 560 tatatatattttttgctcgg 579
||||||||||||||||||||
Sbjct: 43 tatatatattttttgctcgg 62
>gb|DT522869.1|DT522869 WS02038.B21_C14 PTxN-IB-N-A-11 Populus trichocarpa x Populus nigra
cDNA clone WS02038_C14 3', mRNA sequence
Length = 342
Score = 40.1 bits (20), Expect = 0.12
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 560 tatatatattttttgctcgg 579
||||||||||||||||||||
Sbjct: 44 tatatatattttttgctcgg 63
>gb|DT525407.1|DT525407 WS02045.C21_E07 PTxN-IB-N-A-11 Populus trichocarpa x Populus nigra
cDNA clone WS02045_E07 3', mRNA sequence
Length = 423
Score = 40.1 bits (20), Expect = 0.12
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 560 tatatatattttttgctcgg 579
||||||||||||||||||||
Sbjct: 36 tatatatattttttgctcgg 55
>gb|CX183847.1|CX183847 B11_45-114_03.ab1 leaf inoculated with Marssonia pathogen of
Populus euramericana Populus x canadensis cDNA, mRNA
sequence
Length = 688
Score = 38.2 bits (19), Expect = 0.49
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 80 aaaagaagatgttaagaga 98
|||||||||||||||||||
Sbjct: 189 aaaagaagatgttaagaga 171
>gb|DT518776.1|DT518776 WS02439.B21_D17 PTxD-ICC-N-A-14 Populus trichocarpa x Populus
deltoides cDNA clone WS02439_D17 3', mRNA sequence
Length = 520
Score = 38.2 bits (19), Expect = 0.49
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 560 tatatatattttttgctcg 578
|||||||||||||||||||
Sbjct: 2 tatatatattttttgctcg 20
Database: Populus_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:49 PM
Number of letters in database: 203,408,664
Number of sequences in database: 369,679
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 109,949
Number of Sequences: 369679
Number of extensions: 109949
Number of successful extensions: 32670
Number of sequences better than 0.5: 49
Number of HSP's better than 0.5 without gapping: 49
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 32616
Number of HSP's gapped (non-prelim): 53
length of query: 788
length of database: 203,408,664
effective HSP length: 19
effective length of query: 769
effective length of database: 196,384,763
effective search space: 151019882747
effective search space used: 151019882747
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)