BLASTN 2.2.10 [Oct-19-2004]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 3071507.2.1
         (921 letters)

Database: Populus_nucl_with_EST.fasta 
           369,679 sequences; 203,408,664 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|BI125474.1|BI125474  I061P70P Populus leaf cDNA library P...    44   0.009
gb|BU862302.1|BU862302  S013H10 Populus imbibed seed cDNA li...    44   0.009
gb|CA924720.1|CA924720  MTU7CL.P9.C01 Aspen leaf cDNA Librar...    44   0.009
gb|CV280156.1|CV280156  WS0135.B21_B04 PTxD-IL-FL-A-4 Populu...    44   0.009
gb|DN488594.1|DN488594  S013H10.3pR Populus imbibed seed cDN...    44   0.009
gb|DN498284.1|DN498284  S013H10.5pR Populus imbibed seed cDN...    44   0.009
gb|BU861464.1|BU861464  S002D05 Populus imbibed seed cDNA li...    42   0.037
gb|CX655038.1|CX655038  PO01004B01 Poplar SC cDNA library Po...    42   0.037

>gb|BI125474.1|BI125474 I061P70P Populus leaf cDNA library Populus tremula x Populus
           tremuloides cDNA, mRNA sequence
          Length = 595

 Score = 44.1 bits (22), Expect = 0.009
 Identities = 28/30 (93%)
 Strand = Plus / Minus

                                         
Query: 260 cgctccatggccgtgttgacgtagtccatc 289
           ||||||||||| |||||||| |||||||||
Sbjct: 232 cgctccatggcagtgttgacatagtccatc 203



>gb|BU862302.1|BU862302 S013H10 Populus imbibed seed cDNA library Populus tremula cDNA 5
           prime, mRNA sequence
          Length = 543

 Score = 44.1 bits (22), Expect = 0.009
 Identities = 28/30 (93%)
 Strand = Plus / Minus

                                         
Query: 260 cgctccatggccgtgttgacgtagtccatc 289
           ||||||||||| |||||||| |||||||||
Sbjct: 237 cgctccatggcagtgttgacatagtccatc 208



>gb|CA924720.1|CA924720 MTU7CL.P9.C01 Aspen leaf cDNA Library Populus tremuloides cDNA,
           mRNA sequence
          Length = 668

 Score = 44.1 bits (22), Expect = 0.009
 Identities = 28/30 (93%)
 Strand = Plus / Plus

                                         
Query: 260 cgctccatggccgtgttgacgtagtccatc 289
           ||||||||||| |||||||| |||||||||
Sbjct: 83  cgctccatggcagtgttgacatagtccatc 112



>gb|CV280156.1|CV280156 WS0135.B21_B04 PTxD-IL-FL-A-4 Populus trichocarpa x Populus
           deltoides cDNA clone WS0135_B04 3', mRNA sequence
          Length = 919

 Score = 44.1 bits (22), Expect = 0.009
 Identities = 28/30 (93%)
 Strand = Plus / Plus

                                         
Query: 260 cgctccatggccgtgttgacgtagtccatc 289
           ||||||||||| ||||| ||||||||||||
Sbjct: 242 cgctccatggcagtgttcacgtagtccatc 271



>gb|DN488594.1|DN488594 S013H10.3pR Populus imbibed seed cDNA library Populus tremula cDNA
           clone S013H10 3', mRNA sequence
          Length = 366

 Score = 44.1 bits (22), Expect = 0.009
 Identities = 28/30 (93%)
 Strand = Plus / Plus

                                         
Query: 260 cgctccatggccgtgttgacgtagtccatc 289
           ||||||||||| |||||||| |||||||||
Sbjct: 239 cgctccatggcagtgttgacatagtccatc 268



>gb|DN498284.1|DN498284 S013H10.5pR Populus imbibed seed cDNA library Populus tremula cDNA
           clone S013H10 5', mRNA sequence
          Length = 555

 Score = 44.1 bits (22), Expect = 0.009
 Identities = 28/30 (93%)
 Strand = Plus / Minus

                                         
Query: 260 cgctccatggccgtgttgacgtagtccatc 289
           ||||||||||| |||||||| |||||||||
Sbjct: 236 cgctccatggcagtgttgacatagtccatc 207



>gb|BU861464.1|BU861464 S002D05 Populus imbibed seed cDNA library Populus tremula cDNA 5
           prime, mRNA sequence
          Length = 531

 Score = 42.1 bits (21), Expect = 0.037
 Identities = 30/33 (90%)
 Strand = Plus / Minus

                                            
Query: 257 agccgctccatggccgtgttgacgtagtccatc 289
           |||||||||||||||||||| || || ||||||
Sbjct: 357 agccgctccatggccgtgttcacataatccatc 325



>gb|CX655038.1|CX655038 PO01004B01 Poplar SC cDNA library Populus alba x Populus tremula
           var. glandulosa cDNA clone PO01004B01 5', mRNA sequence
          Length = 692

 Score = 42.1 bits (21), Expect = 0.037
 Identities = 30/33 (90%)
 Strand = Plus / Minus

                                            
Query: 257 agccgctccatggccgtgttgacgtagtccatc 289
           |||||||||||||||||||| || || ||||||
Sbjct: 654 agccgctccatggccgtgttcacataatccatc 622



  Database: Populus_nucl_with_EST.fasta
    Posted date:  Feb 7, 2006  2:49 PM
  Number of letters in database: 203,408,664
  Number of sequences in database:  369,679
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 55,356
Number of Sequences: 369679
Number of extensions: 55356
Number of successful extensions: 15627
Number of sequences better than  0.5: 8
Number of HSP's better than  0.5 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 15616
Number of HSP's gapped (non-prelim): 11
length of query: 921
length of database: 203,408,664
effective HSP length: 19
effective length of query: 902
effective length of database: 196,384,763
effective search space: 177139056226
effective search space used: 177139056226
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)