BLASTN 2.2.10 [Oct-19-2004]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 3071418.2.1
         (1432 letters)

Database: Populus_nucl_with_EST.fasta 
           369,679 sequences; 203,408,664 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|CV240640.1|CV240640  WS0251.B21_P01 PT-MB-N-A-15 Populus ...    42   0.058
gb|DT478281.1|DT478281  WS02522.BR_F14 PT-MB-N-A-15 Populus ...    42   0.058
gb|DT483349.1|DT483349  WS02522.B21_F14 PT-MB-N-A-15 Populus...    42   0.058

>gb|CV240640.1|CV240640 WS0251.B21_P01 PT-MB-N-A-15 Populus trichocarpa cDNA clone
           WS0251_P01 3', mRNA sequence
          Length = 528

 Score = 42.1 bits (21), Expect = 0.058
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                    
Query: 647 ggcggcggcgatggtggcggcggcg 671
           ||||||||| |||||||||||||||
Sbjct: 401 ggcggcggcaatggtggcggcggcg 425



>gb|DT478281.1|DT478281 WS02522.BR_F14 PT-MB-N-A-15 Populus trichocarpa cDNA clone
           WS02522_F14 5', mRNA sequence
          Length = 694

 Score = 42.1 bits (21), Expect = 0.058
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 669 gcgccaccatggccaccaccg 689
           |||||||||||||||||||||
Sbjct: 589 gcgccaccatggccaccaccg 609



>gb|DT483349.1|DT483349 WS02522.B21_F14 PT-MB-N-A-15 Populus trichocarpa cDNA clone
           WS02522_F14 3', mRNA sequence
          Length = 694

 Score = 42.1 bits (21), Expect = 0.058
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 669 gcgccaccatggccaccaccg 689
           |||||||||||||||||||||
Sbjct: 106 gcgccaccatggccaccaccg 86



  Database: Populus_nucl_with_EST.fasta
    Posted date:  Feb 7, 2006  2:49 PM
  Number of letters in database: 203,408,664
  Number of sequences in database:  369,679
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 145,583
Number of Sequences: 369679
Number of extensions: 145583
Number of successful extensions: 42393
Number of sequences better than  0.5: 3
Number of HSP's better than  0.5 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 42386
Number of HSP's gapped (non-prelim): 7
length of query: 1432
length of database: 203,408,664
effective HSP length: 19
effective length of query: 1413
effective length of database: 196,384,763
effective search space: 277491670119
effective search space used: 277491670119
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)