BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 3071103.2.1
(570 letters)
Database: Populus_nucl_with_EST.fasta
369,679 sequences; 203,408,664 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CV277717.1|CV277717 WS0144.B21_F20 PTxD-IL-A-5 Populus t... 40 0.089
gb|CV277744.1|CV277744 WS0144.B21_H01 PTxD-IL-A-5 Populus t... 40 0.089
gb|CV278972.1|CV278972 WS0147.B21_P23 PTxD-IL-A-5 Populus t... 40 0.089
gb|CV283971.1|CV283971 WS0188.B21_M16 PTxD-IL-N-A-9 Populus... 40 0.089
gb|DT505478.1|DT505478 WS01811.C21_A13 PTxD-IL-N-A-9 Populu... 40 0.089
gb|DV464823.1|DV464823 MTUNUL1.P31.C05 NUL Populus fremonti... 40 0.089
gb|DV466140.1|DV466140 MTUNUL1.P47.G08 NUL Populus fremonti... 40 0.089
gb|BI125794.1|BI125794 I066P14P Populus leaf cDNA library P... 38 0.35
gb|BU816847.1|BU816847 UA10BPA08 Populus tremula cambium cD... 38 0.35
gb|BU818936.1|BU818936 UA37BPD06 Populus tremula cambium cD... 38 0.35
gb|BU818950.1|BU818950 UA37BPE08 Populus tremula cambium cD... 38 0.35
gb|BU819999.1|BU819999 UA50BPB05 Populus tremula cambium cD... 38 0.35
gb|CA924071.1|CA924071 MTU7CL.P1.D04 Aspen leaf cDNA Librar... 38 0.35
gb|CA924288.1|CA924288 MTU7CL.P3.H12 Aspen leaf cDNA Librar... 38 0.35
gb|CA927240.1|CA927240 MTU6CR.P6.F08 Aspen root cDNA Librar... 38 0.35
gb|CA821239.1|CA821239 RA01E01 three-week-old roots incubat... 38 0.35
gb|CK095940.1|CK095940 UA37BPE08.3pR Populus dormant cambiu... 38 0.35
gb|CK105758.1|CK105758 UA37BPE08.5pR Populus dormant cambiu... 38 0.35
gb|CK116138.1|CK116138 Y020E02 Populus infected leaf substr... 38 0.35
gb|CV240445.1|CV240445 WS0251.B21_G11 PT-MB-N-A-15 Populus ... 38 0.35
gb|CV257349.1|CV257349 WS0246.B21_G12 PTxD-ICC-N-A-14 Popul... 38 0.35
gb|CV263505.1|CV263505 WS02022.B21_A16 PTxN-IB-N-A-11 Popul... 38 0.35
gb|CV281195.1|CV281195 WS0181.B21_E10 PTxD-IL-N-A-9 Populus... 38 0.35
gb|CX655163.1|CX655163 PO02030G07 Poplar SC cDNA library Po... 38 0.35
gb|CX655836.1|CX655836 PO02040G07 Poplar SC cDNA library Po... 38 0.35
gb|CX658483.1|CX658483 PO01035F02 Poplar SC cDNA library Po... 38 0.35
gb|CX659018.1|CX659018 PO01025E01 Poplar SC cDNA library Po... 38 0.35
gb|CX659039.1|CX659039 PO01025G05 Poplar SC cDNA library Po... 38 0.35
gb|CX659801.1|CX659801 PO01014C09 Poplar SC cDNA library Po... 38 0.35
gb|CX659804.1|CX659804 PO01014C12 Poplar SC cDNA library Po... 38 0.35
>gb|CV277717.1|CV277717 WS0144.B21_F20 PTxD-IL-A-5 Populus trichocarpa x Populus deltoides
cDNA clone WS0144_F20 3', mRNA sequence
Length = 763
Score = 40.1 bits (20), Expect = 0.089
Identities = 29/32 (90%)
Strand = Plus / Plus
Query: 358 ttcatccagaaccacagcgctgtcttgaagga 389
|||||||| ||||| || ||||||||||||||
Sbjct: 448 ttcatccaaaaccagagtgctgtcttgaagga 479
>gb|CV277744.1|CV277744 WS0144.B21_H01 PTxD-IL-A-5 Populus trichocarpa x Populus deltoides
cDNA clone WS0144_H01 3', mRNA sequence
Length = 883
Score = 40.1 bits (20), Expect = 0.089
Identities = 29/32 (90%)
Strand = Plus / Plus
Query: 358 ttcatccagaaccacagcgctgtcttgaagga 389
|||||||| ||||| || ||||||||||||||
Sbjct: 429 ttcatccaaaaccagagtgctgtcttgaagga 460
>gb|CV278972.1|CV278972 WS0147.B21_P23 PTxD-IL-A-5 Populus trichocarpa x Populus deltoides
cDNA clone WS0147_P23 3', mRNA sequence
Length = 859
Score = 40.1 bits (20), Expect = 0.089
Identities = 29/32 (90%)
Strand = Plus / Plus
Query: 358 ttcatccagaaccacagcgctgtcttgaagga 389
|||||||| ||||| || ||||||||||||||
Sbjct: 415 ttcatccaaaaccagagtgctgtcttgaagga 446
>gb|CV283971.1|CV283971 WS0188.B21_M16 PTxD-IL-N-A-9 Populus trichocarpa x Populus
deltoides cDNA clone WS0188_M16 3', mRNA sequence
Length = 882
Score = 40.1 bits (20), Expect = 0.089
Identities = 29/32 (90%)
Strand = Plus / Minus
Query: 358 ttcatccagaaccacagcgctgtcttgaagga 389
|||||||| ||||| || ||||||||||||||
Sbjct: 729 ttcatccaaaaccagagtgctgtcttgaagga 698
>gb|DT505478.1|DT505478 WS01811.C21_A13 PTxD-IL-N-A-9 Populus trichocarpa x Populus
deltoides cDNA clone WS01811_A13 3', mRNA sequence
Length = 847
Score = 40.1 bits (20), Expect = 0.089
Identities = 29/32 (90%)
Strand = Plus / Plus
Query: 358 ttcatccagaaccacagcgctgtcttgaagga 389
|||||||| ||||| || ||||||||||||||
Sbjct: 353 ttcatccaaaaccagagtgctgtcttgaagga 384
>gb|DV464823.1|DV464823 MTUNUL1.P31.C05 NUL Populus fremontii x Populus angustifolia cDNA,
mRNA sequence
Length = 887
Score = 40.1 bits (20), Expect = 0.089
Identities = 29/32 (90%)
Strand = Plus / Plus
Query: 358 ttcatccagaaccacagcgctgtcttgaagga 389
|||||||| ||||| || ||||||||||||||
Sbjct: 422 ttcatccaaaaccagagtgctgtcttgaagga 453
>gb|DV466140.1|DV466140 MTUNUL1.P47.G08 NUL Populus fremontii x Populus angustifolia cDNA,
mRNA sequence
Length = 773
Score = 40.1 bits (20), Expect = 0.089
Identities = 29/32 (90%)
Strand = Plus / Plus
Query: 358 ttcatccagaaccacagcgctgtcttgaagga 389
|||||||| ||||| || ||||||||||||||
Sbjct: 431 ttcatccaaaaccagagtgctgtcttgaagga 462
>gb|BI125794.1|BI125794 I066P14P Populus leaf cDNA library Populus tremula x Populus
tremuloides cDNA, mRNA sequence
Length = 419
Score = 38.2 bits (19), Expect = 0.35
Identities = 28/31 (90%)
Strand = Plus / Minus
Query: 359 tcatccagaaccacagcgctgtcttgaagga 389
||||||||||||| | ||||||||||||||
Sbjct: 131 tcatccagaaccaaattgctgtcttgaagga 101
>gb|BU816847.1|BU816847 UA10BPA08 Populus tremula cambium cDNA library Populus tremula cDNA
5 prime, mRNA sequence
Length = 455
Score = 38.2 bits (19), Expect = 0.35
Identities = 28/31 (90%)
Strand = Plus / Minus
Query: 359 tcatccagaaccacagcgctgtcttgaagga 389
||||||||||||| | ||||||||||||||
Sbjct: 123 tcatccagaaccaaattgctgtcttgaagga 93
>gb|BU818936.1|BU818936 UA37BPD06 Populus tremula cambium cDNA library Populus tremula cDNA
5 prime, mRNA sequence
Length = 586
Score = 38.2 bits (19), Expect = 0.35
Identities = 28/31 (90%)
Strand = Plus / Minus
Query: 359 tcatccagaaccacagcgctgtcttgaagga 389
||||||||||||| | ||||||||||||||
Sbjct: 232 tcatccagaaccaaattgctgtcttgaagga 202
>gb|BU818950.1|BU818950 UA37BPE08 Populus tremula cambium cDNA library Populus tremula cDNA
5 prime, mRNA sequence
Length = 591
Score = 38.2 bits (19), Expect = 0.35
Identities = 28/31 (90%)
Strand = Plus / Minus
Query: 359 tcatccagaaccacagcgctgtcttgaagga 389
||||||||||||| | ||||||||||||||
Sbjct: 210 tcatccagaaccaaattgctgtcttgaagga 180
>gb|BU819999.1|BU819999 UA50BPB05 Populus tremula cambium cDNA library Populus tremula cDNA
5 prime, mRNA sequence
Length = 576
Score = 38.2 bits (19), Expect = 0.35
Identities = 28/31 (90%)
Strand = Plus / Minus
Query: 359 tcatccagaaccacagcgctgtcttgaagga 389
||||||||||||| | ||||||||||||||
Sbjct: 419 tcatccagaaccaaattgctgtcttgaagga 389
>gb|CA924071.1|CA924071 MTU7CL.P1.D04 Aspen leaf cDNA Library Populus tremuloides cDNA,
mRNA sequence
Length = 648
Score = 38.2 bits (19), Expect = 0.35
Identities = 28/31 (90%)
Strand = Plus / Plus
Query: 359 tcatccagaaccacagcgctgtcttgaagga 389
||||||||||||| | ||||||||||||||
Sbjct: 182 tcatccagaaccaaattgctgtcttgaagga 212
>gb|CA924288.1|CA924288 MTU7CL.P3.H12 Aspen leaf cDNA Library Populus tremuloides cDNA,
mRNA sequence
Length = 660
Score = 38.2 bits (19), Expect = 0.35
Identities = 28/31 (90%)
Strand = Plus / Plus
Query: 359 tcatccagaaccacagcgctgtcttgaagga 389
||||||||||||| | ||||||||||||||
Sbjct: 182 tcatccagaaccaaattgctgtcttgaagga 212
>gb|CA927240.1|CA927240 MTU6CR.P6.F08 Aspen root cDNA Library Populus tremuloides cDNA,
mRNA sequence
Length = 653
Score = 38.2 bits (19), Expect = 0.35
Identities = 28/31 (90%)
Strand = Plus / Plus
Query: 359 tcatccagaaccacagcgctgtcttgaagga 389
||||||||||||| | ||||||||||||||
Sbjct: 182 tcatccagaaccaaattgctgtcttgaagga 212
>gb|CA821239.1|CA821239 RA01E01 three-week-old roots incubated in 5uM indole-3-acetic acid
24h before harvesting Populus alba x Populus tremula
cDNA 5', mRNA sequence
Length = 650
Score = 38.2 bits (19), Expect = 0.35
Identities = 28/31 (90%)
Strand = Plus / Minus
Query: 359 tcatccagaaccacagcgctgtcttgaagga 389
||||||||||||| | ||||||||||||||
Sbjct: 257 tcatccagaaccaaattgctgtcttgaagga 227
>gb|CK095940.1|CK095940 UA37BPE08.3pR Populus dormant cambium cDNA library Populus tremula
cDNA clone UA37BPE08 3', mRNA sequence
Length = 583
Score = 38.2 bits (19), Expect = 0.35
Identities = 28/31 (90%)
Strand = Plus / Plus
Query: 359 tcatccagaaccacagcgctgtcttgaagga 389
||||||||||||| | ||||||||||||||
Sbjct: 372 tcatccagaaccaaattgctgtcttgaagga 402
>gb|CK105758.1|CK105758 UA37BPE08.5pR Populus dormant cambium cDNA library Populus tremula
cDNA clone UA37BPE08 5', mRNA sequence
Length = 219
Score = 38.2 bits (19), Expect = 0.35
Identities = 28/31 (90%)
Strand = Plus / Minus
Query: 359 tcatccagaaccacagcgctgtcttgaagga 389
||||||||||||| | ||||||||||||||
Sbjct: 190 tcatccagaaccaaattgctgtcttgaagga 160
>gb|CK116138.1|CK116138 Y020E02 Populus infected leaf substracted cDNA library Populus
tremula cDNA clone Y020E02 5', mRNA sequence
Length = 404
Score = 38.2 bits (19), Expect = 0.35
Identities = 28/31 (90%)
Strand = Plus / Minus
Query: 359 tcatccagaaccacagcgctgtcttgaagga 389
||||||||||||| | ||||||||||||||
Sbjct: 148 tcatccagaaccaaattgctgtcttgaagga 118
>gb|CV240445.1|CV240445 WS0251.B21_G11 PT-MB-N-A-15 Populus trichocarpa cDNA clone
WS0251_G11 3', mRNA sequence
Length = 839
Score = 38.2 bits (19), Expect = 0.35
Identities = 28/31 (90%)
Strand = Plus / Plus
Query: 359 tcatccagaaccacagcgctgtcttgaagga 389
||||||| ||||| || ||||||||||||||
Sbjct: 358 tcatccaaaaccagagtgctgtcttgaagga 388
>gb|CV257349.1|CV257349 WS0246.B21_G12 PTxD-ICC-N-A-14 Populus trichocarpa x Populus
deltoides cDNA clone WS0246_G12 3', mRNA sequence
Length = 739
Score = 38.2 bits (19), Expect = 0.35
Identities = 28/31 (90%)
Strand = Plus / Plus
Query: 359 tcatccagaaccacagcgctgtcttgaagga 389
||||||| ||||| || ||||||||||||||
Sbjct: 358 tcatccaaaaccagagtgctgtcttgaagga 388
>gb|CV263505.1|CV263505 WS02022.B21_A16 PTxN-IB-N-A-11 Populus trichocarpa x Populus nigra
cDNA clone WS02022_A16 3', mRNA sequence
Length = 593
Score = 38.2 bits (19), Expect = 0.35
Identities = 28/31 (90%)
Strand = Plus / Plus
Query: 359 tcatccagaaccacagcgctgtcttgaagga 389
||||||| ||||| || ||||||||||||||
Sbjct: 365 tcatccaaaaccagagtgctgtcttgaagga 395
>gb|CV281195.1|CV281195 WS0181.B21_E10 PTxD-IL-N-A-9 Populus trichocarpa x Populus
deltoides cDNA clone WS0181_E10 3', mRNA sequence
Length = 828
Score = 38.2 bits (19), Expect = 0.35
Identities = 28/31 (90%)
Strand = Plus / Plus
Query: 359 tcatccagaaccacagcgctgtcttgaagga 389
||||||| ||||| || ||||||||||||||
Sbjct: 357 tcatccaaaaccagagtgctgtcttgaagga 387
>gb|CX655163.1|CX655163 PO02030G07 Poplar SC cDNA library Populus alba x Populus tremula
var. glandulosa cDNA clone PO02030G07 5', mRNA sequence
Length = 495
Score = 38.2 bits (19), Expect = 0.35
Identities = 28/31 (90%)
Strand = Plus / Minus
Query: 359 tcatccagaaccacagcgctgtcttgaagga 389
||||||| ||||| || ||||||||||||||
Sbjct: 239 tcatccaaaaccagagtgctgtcttgaagga 209
>gb|CX655836.1|CX655836 PO02040G07 Poplar SC cDNA library Populus alba x Populus tremula
var. glandulosa cDNA clone PO02040G07 5', mRNA sequence
Length = 185
Score = 38.2 bits (19), Expect = 0.35
Identities = 28/31 (90%)
Strand = Plus / Minus
Query: 359 tcatccagaaccacagcgctgtcttgaagga 389
||||||||||||| | ||||||||||||||
Sbjct: 130 tcatccagaaccaaattgctgtcttgaagga 100
>gb|CX658483.1|CX658483 PO01035F02 Poplar SC cDNA library Populus alba x Populus tremula
var. glandulosa cDNA clone PO01035F02 5', mRNA sequence
Length = 427
Score = 38.2 bits (19), Expect = 0.35
Identities = 28/31 (90%)
Strand = Plus / Minus
Query: 359 tcatccagaaccacagcgctgtcttgaagga 389
||||||||||||| | ||||||||||||||
Sbjct: 68 tcatccagaaccaaattgctgtcttgaagga 38
>gb|CX659018.1|CX659018 PO01025E01 Poplar SC cDNA library Populus alba x Populus tremula
var. glandulosa cDNA clone PO01025E01 5', mRNA sequence
Length = 417
Score = 38.2 bits (19), Expect = 0.35
Identities = 28/31 (90%)
Strand = Plus / Minus
Query: 359 tcatccagaaccacagcgctgtcttgaagga 389
||||||||||||| | ||||||||||||||
Sbjct: 67 tcatccagaaccaaattgctgtcttgaagga 37
>gb|CX659039.1|CX659039 PO01025G05 Poplar SC cDNA library Populus alba x Populus tremula
var. glandulosa cDNA clone PO01025G05 5', mRNA sequence
Length = 558
Score = 38.2 bits (19), Expect = 0.35
Identities = 28/31 (90%)
Strand = Plus / Minus
Query: 359 tcatccagaaccacagcgctgtcttgaagga 389
||||||||||||| | ||||||||||||||
Sbjct: 208 tcatccagaaccaaattgctgtcttgaagga 178
>gb|CX659801.1|CX659801 PO01014C09 Poplar SC cDNA library Populus alba x Populus tremula
var. glandulosa cDNA clone PO01014C09 5', mRNA sequence
Length = 397
Score = 38.2 bits (19), Expect = 0.35
Identities = 28/31 (90%)
Strand = Plus / Minus
Query: 359 tcatccagaaccacagcgctgtcttgaagga 389
||||||||||||| | ||||||||||||||
Sbjct: 47 tcatccagaaccaaattgctgtcttgaagga 17
>gb|CX659804.1|CX659804 PO01014C12 Poplar SC cDNA library Populus alba x Populus tremula
var. glandulosa cDNA clone PO01014C12 5', mRNA sequence
Length = 471
Score = 38.2 bits (19), Expect = 0.35
Identities = 28/31 (90%)
Strand = Plus / Minus
Query: 359 tcatccagaaccacagcgctgtcttgaagga 389
||||||||||||| | ||||||||||||||
Sbjct: 121 tcatccagaaccaaattgctgtcttgaagga 91
Database: Populus_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:49 PM
Number of letters in database: 203,408,664
Number of sequences in database: 369,679
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 33,699
Number of Sequences: 369679
Number of extensions: 33699
Number of successful extensions: 8920
Number of sequences better than 0.5: 30
Number of HSP's better than 0.5 without gapping: 30
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 8863
Number of HSP's gapped (non-prelim): 57
length of query: 570
length of database: 203,408,664
effective HSP length: 19
effective length of query: 551
effective length of database: 196,384,763
effective search space: 108208004413
effective search space used: 108208004413
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)