BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 3070863.2.1
(992 letters)
Database: Populus_nucl_with_EST.fasta
369,679 sequences; 203,408,664 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|AJ771658.1|AJ771658 AJ771658 Populus euphratica root 3-6... 56 3e-006
gb|CV236179.1|CV236179 WS01223.B21_C07 PT-GT-FL-A-3 Populus... 44 0.010
gb|CV237987.1|CV237987 WS0124.B21_N16 PT-GT-FL-A-3 Populus ... 44 0.010
gb|DN494002.1|DN494002 I058P10.5pR Populus senescing leaves... 44 0.010
gb|BU878685.1|BU878685 V050C06 Populus flower cDNA library ... 42 0.040
gb|CV275990.1|CV275990 WS0178.B21.1_E09 PTxD-NR-A-8 Populus... 42 0.040
gb|DT490757.1|DT490757 WS02545.B21_N20 PT-MB-N-A-15 Populus... 42 0.040
gb|DT503570.1|DT503570 WS0137.BR_B15 PTxD-IL-FL-A-4 Populus... 42 0.040
gb|CK090453.1|CK090453 F006P03.3pR Populus flower cDNA libr... 40 0.16
gb|CV248271.1|CV248271 WS01120.B21_B05 PT-P-FL-A-2 Populus ... 40 0.16
gb|CX176792.1|CX176792 H04_69-73_16.ab1 leaf inoculated wit... 40 0.16
gb|CX176909.1|CX176909 H01_69-103_15.ab1 leaf inoculated wi... 40 0.16
gb|DN484560.1|DN484560 I058P10.3pR Populus senescing leaves... 40 0.16
gb|DT495302.1|DT495302 WS01120.BR_B05 PT-P-FL-A-2 Populus t... 40 0.16
>gb|AJ771658.1|AJ771658 AJ771658 Populus euphratica root 3-6 months Populus euphratica cDNA
clone P0001600003H01F1, mRNA sequence
Length = 280
Score = 56.0 bits (28), Expect = 3e-006
Identities = 82/100 (82%)
Strand = Plus / Minus
Query: 523 atgtatggtgtcacaaagactgctctctttggtctcacgaaggctcttgctggtgagatg 582
|||||||||||||||||||| || || ||||| || || |||| ||||||| |||||||
Sbjct: 100 atgtatggtgtcacaaagacagccctttttgggcttaccaaggtgcttgctgctgagatg 41
Query: 583 ggacccgatactcgtgttaactgtatagcccctggttttg 622
| || | ||||| || ||||||||||| ||||| ||||
Sbjct: 40 gctcctcacactcgagtgaactgtatagctcctggctttg 1
Score = 42.1 bits (21), Expect = 0.040
Identities = 27/29 (93%)
Strand = Plus / Minus
Query: 382 tctgttctcgataagctgtgggatattaa 410
||||| ||||||||||||||||| |||||
Sbjct: 241 tctgtcctcgataagctgtgggaaattaa 213
>gb|CV236179.1|CV236179 WS01223.B21_C07 PT-GT-FL-A-3 Populus trichocarpa cDNA clone
WS01223_C07 3', mRNA sequence
Length = 861
Score = 44.1 bits (22), Expect = 0.010
Identities = 115/146 (78%)
Strand = Plus / Minus
Query: 523 atgtatggtgtcacaaagactgctctctttggtctcacgaaggctcttgctggtgagatg 582
|||||||||||||||||||| || || ||||| || || |||| ||||| | ||| |||
Sbjct: 333 atgtatggtgtcacaaagacagccctttttgggcttaccaaggtgcttgcagctgaaatg 274
Query: 583 ggacccgatactcgtgttaactgtatagcccctggttttgttcctacacggtttgctagt 642
| || | ||||| || ||||||||||| ||||| ||||| || |||| |||||| |
Sbjct: 273 gctcctcacactcgagtgaactgtatagctcctgggtttgtaccaacacactttgctgat 214
Query: 643 ttcctcacagaaaatgagaccattag 668
||| | |||| ||| ||||||||||
Sbjct: 213 ttcattacaggcaatcagaccattag 188
>gb|CV237987.1|CV237987 WS0124.B21_N16 PT-GT-FL-A-3 Populus trichocarpa cDNA clone
WS0124_N16 3', mRNA sequence
Length = 640
Score = 44.1 bits (22), Expect = 0.010
Identities = 115/146 (78%)
Strand = Plus / Minus
Query: 523 atgtatggtgtcacaaagactgctctctttggtctcacgaaggctcttgctggtgagatg 582
|||||||||||||||||||| || || ||||| || || |||| ||||| | ||| |||
Sbjct: 402 atgtatggtgtcacaaagacagccctttttgggcttaccaaggtgcttgcagctgaaatg 343
Query: 583 ggacccgatactcgtgttaactgtatagcccctggttttgttcctacacggtttgctagt 642
| || | ||||| || ||||||||||| ||||| ||||| || |||| |||||| |
Sbjct: 342 gctcctcacactcgagtgaactgtatagctcctgggtttgtaccaacacactttgctgat 283
Query: 643 ttcctcacagaaaatgagaccattag 668
||| | |||| ||| ||||||||||
Sbjct: 282 ttcattacaggcaatcagaccattag 257
>gb|DN494002.1|DN494002 I058P10.5pR Populus senescing leaves cDNA library Populus tremula
cDNA clone I058P10 5', mRNA sequence
Length = 758
Score = 44.1 bits (22), Expect = 0.010
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 521 caatgtatggtgtcacaaagac 542
||||||||||||||||||||||
Sbjct: 700 caatgtatggtgtcacaaagac 721
>gb|BU878685.1|BU878685 V050C06 Populus flower cDNA library Populus trichocarpa cDNA 5
prime, mRNA sequence
Length = 612
Score = 42.1 bits (21), Expect = 0.040
Identities = 81/101 (80%)
Strand = Plus / Plus
Query: 523 atgtatggtgtcacaaagactgctctctttggtctcacgaaggctcttgctggtgagatg 582
|||||||||||||||||||| || || ||||| || || |||| ||||| | ||| |||
Sbjct: 489 atgtatggtgtcacaaagacagccctttttgggcttaccaaggtgcttgcagctgaaatg 548
Query: 583 ggacccgatactcgtgttaactgtatagcccctggttttgt 623
| || | ||||| || ||||||||||| ||||| |||||
Sbjct: 549 gctcctcacactcgagtgaactgtatagctcctgggtttgt 589
>gb|CV275990.1|CV275990 WS0178.B21.1_E09 PTxD-NR-A-8 Populus trichocarpa x Populus
deltoides cDNA clone WS0178_E09 3', mRNA sequence
Length = 881
Score = 42.1 bits (21), Expect = 0.040
Identities = 72/89 (80%)
Strand = Plus / Plus
Query: 523 atgtatggtgtcacaaagactgctctctttggtctcacgaaggctcttgctggtgagatg 582
|||||||||||||||||||| || || ||||| || || |||| ||||| | |||||||
Sbjct: 510 atgtatggtgtcacaaagacagccctttttgggcttaccaaggtgcttgcagctgagatg 569
Query: 583 ggacccgatactcgtgttaactgtatagc 611
| || | ||||| || |||||||||||
Sbjct: 570 gctcctcacactcgagtgaactgtatagc 598
Score = 42.1 bits (21), Expect = 0.040
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 382 tctgttctcgataagctgtgggatattaa 410
||||| ||||||||||||||||| |||||
Sbjct: 369 tctgtcctcgataagctgtgggaaattaa 397
>gb|DT490757.1|DT490757 WS02545.B21_N20 PT-MB-N-A-15 Populus trichocarpa cDNA clone
WS02545_N20 3', mRNA sequence
Length = 714
Score = 42.1 bits (21), Expect = 0.040
Identities = 72/89 (80%)
Strand = Plus / Minus
Query: 523 atgtatggtgtcacaaagactgctctctttggtctcacgaaggctcttgctggtgagatg 582
|||||||||||||||||||| || || ||||| || || |||| ||||| | |||||||
Sbjct: 549 atgtatggtgtcacaaagacagccctttttgggcttaccaaggtgcttgcagctgagatg 490
Query: 583 ggacccgatactcgtgttaactgtatagc 611
| || | ||||| || |||||||||||
Sbjct: 489 gctcctcacactcgagtgaactgtatagc 461
>gb|DT503570.1|DT503570 WS0137.BR_B15 PTxD-IL-FL-A-4 Populus trichocarpa x Populus
deltoides cDNA clone WS0137_B15 5', mRNA sequence
Length = 795
Score = 42.1 bits (21), Expect = 0.040
Identities = 72/89 (80%)
Strand = Plus / Plus
Query: 523 atgtatggtgtcacaaagactgctctctttggtctcacgaaggctcttgctggtgagatg 582
|||||||||||||||||||| || || ||||| || || |||| ||||| | |||||||
Sbjct: 363 atgtatggtgtcacaaagacagccctttttgggcttaccaaggtgcttgcagctgagatg 422
Query: 583 ggacccgatactcgtgttaactgtatagc 611
| || | ||||| || |||||||||||
Sbjct: 423 gctcctcacactcgagtgaactgtatagc 451
Score = 42.1 bits (21), Expect = 0.040
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 382 tctgttctcgataagctgtgggatattaa 410
||||| ||||||||||||||||| |||||
Sbjct: 222 tctgtcctcgataagctgtgggaaattaa 250
>gb|CK090453.1|CK090453 F006P03.3pR Populus flower cDNA library Populus trichocarpa cDNA
clone F006P03 3', mRNA sequence
Length = 856
Score = 40.1 bits (20), Expect = 0.16
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 523 atgtatggtgtcacaaagac 542
||||||||||||||||||||
Sbjct: 459 atgtatggtgtcacaaagac 440
>gb|CV248271.1|CV248271 WS01120.B21_B05 PT-P-FL-A-2 Populus trichocarpa cDNA clone
WS01120_B05 3', mRNA sequence
Length = 574
Score = 40.1 bits (20), Expect = 0.16
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 523 atgtatggtgtcacaaagac 542
||||||||||||||||||||
Sbjct: 70 atgtatggtgtcacaaagac 51
>gb|CX176792.1|CX176792 H04_69-73_16.ab1 leaf inoculated with Marssonia pathogen of Populus
deltoides Populus deltoides cDNA, mRNA sequence
Length = 666
Score = 40.1 bits (20), Expect = 0.16
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 163 gtcgtcatctcctcccgcaa 182
||||||||||||||||||||
Sbjct: 140 gtcgtcatctcctcccgcaa 121
>gb|CX176909.1|CX176909 H01_69-103_15.ab1 leaf inoculated with Marssonia pathogen of
Populus deltoides Populus deltoides cDNA, mRNA sequence
Length = 639
Score = 40.1 bits (20), Expect = 0.16
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 163 gtcgtcatctcctcccgcaa 182
||||||||||||||||||||
Sbjct: 39 gtcgtcatctcctcccgcaa 20
>gb|DN484560.1|DN484560 I058P10.3pR Populus senescing leaves cDNA library Populus tremula
cDNA clone I058P10 3', mRNA sequence
Length = 503
Score = 40.1 bits (20), Expect = 0.16
Identities = 65/80 (81%)
Strand = Plus / Minus
Query: 592 actcgtgttaactgtatagcccctggttttgttcctacacggtttgctagtttcctcaca 651
||||| || ||||||||||| ||||| ||||| || |||| |||||| |||| | |||
Sbjct: 450 actcgagtgaactgtatagctcctgggtttgtaccaacactctttgctgatttcattaca 391
Query: 652 gaaaatgagaccattaggaa 671
| ||| |||||||||||||
Sbjct: 390 ggcaatcagaccattaggaa 371
>gb|DT495302.1|DT495302 WS01120.BR_B05 PT-P-FL-A-2 Populus trichocarpa cDNA clone
WS01120_B05 5', mRNA sequence
Length = 592
Score = 40.1 bits (20), Expect = 0.16
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 523 atgtatggtgtcacaaagac 542
||||||||||||||||||||
Sbjct: 523 atgtatggtgtcacaaagac 542
Database: Populus_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:49 PM
Number of letters in database: 203,408,664
Number of sequences in database: 369,679
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 105,073
Number of Sequences: 369679
Number of extensions: 105073
Number of successful extensions: 28816
Number of sequences better than 0.5: 14
Number of HSP's better than 0.5 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 28766
Number of HSP's gapped (non-prelim): 46
length of query: 992
length of database: 203,408,664
effective HSP length: 19
effective length of query: 973
effective length of database: 196,384,763
effective search space: 191082374399
effective search space used: 191082374399
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)