BLASTN 2.2.10 [Oct-19-2004]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 3067516.2.1
         (605 letters)

Database: Populus_nucl_with_EST.fasta 
           369,679 sequences; 203,408,664 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|BU869918.1|BU869918  Q006B04 Populus flower cDNA library ...    48   4e-004
gb|DT517336.1|DT517336  WS02434.B21_A14 PTxD-ICC-N-A-14 Popu...    44   0.006
gb|BU813649.1|BU813649  N013B09 Populus bark cDNA library Po...    38   0.38 
gb|CV273928.1|CV273928  WS01712.B21_K10 PTxD-NR-A-8 Populus ...    38   0.38 

>gb|BU869918.1|BU869918 Q006B04 Populus flower cDNA library Populus trichocarpa cDNA 5
           prime, mRNA sequence
          Length = 425

 Score = 48.1 bits (24), Expect = 4e-004
 Identities = 39/44 (88%)
 Strand = Plus / Minus

                                                       
Query: 234 ttccaagaattcttggcagcttctgcagatgaaccactagaatc 277
           ||||| ||||| || |||||||| ||||||||||||| ||||||
Sbjct: 191 ttccatgaattttttgcagcttcagcagatgaaccaccagaatc 148



>gb|DT517336.1|DT517336 WS02434.B21_A14 PTxD-ICC-N-A-14 Populus trichocarpa x Populus
           deltoides cDNA clone WS02434_A14 3', mRNA sequence
          Length = 847

 Score = 44.1 bits (22), Expect = 0.006
 Identities = 34/38 (89%)
 Strand = Plus / Plus

                                                 
Query: 240 gaattcttggcagcttctgcagatgaaccactagaatc 277
           ||||| || |||||||| ||||||||||||| ||||||
Sbjct: 340 gaattttttgcagcttcagcagatgaaccaccagaatc 377



>gb|BU813649.1|BU813649 N013B09 Populus bark cDNA library Populus tremula x Populus
           tremuloides cDNA 5 prime, mRNA sequence
          Length = 515

 Score = 38.2 bits (19), Expect = 0.38
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                              
Query: 1   ttttcttttgtcttccaaa 19
           |||||||||||||||||||
Sbjct: 377 ttttcttttgtcttccaaa 359



>gb|CV273928.1|CV273928 WS01712.B21_K10 PTxD-NR-A-8 Populus trichocarpa x Populus deltoides
           cDNA clone WS01712_K10 3', mRNA sequence
          Length = 824

 Score = 38.2 bits (19), Expect = 0.38
 Identities = 43/51 (84%)
 Strand = Plus / Plus

                                                              
Query: 461 atcaaatgcatctttcaatgtctccagtttcgatcttggatcggcatatat 511
           ||||||||||||||  || ||||||| | | || |||||||| ||||||||
Sbjct: 249 atcaaatgcatcttcaaaggtctccaatcttgaccttggatctgcatatat 299



  Database: Populus_nucl_with_EST.fasta
    Posted date:  Feb 7, 2006  2:49 PM
  Number of letters in database: 203,408,664
  Number of sequences in database:  369,679
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 93,197
Number of Sequences: 369679
Number of extensions: 93197
Number of successful extensions: 26326
Number of sequences better than  0.5: 4
Number of HSP's better than  0.5 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 26322
Number of HSP's gapped (non-prelim): 4
length of query: 605
length of database: 203,408,664
effective HSP length: 19
effective length of query: 586
effective length of database: 196,384,763
effective search space: 115081471118
effective search space used: 115081471118
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)