BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 3067375.2.1
(1829 letters)
Database: Populus_nucl_with_EST.fasta
369,679 sequences; 203,408,664 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CX171278.1|CX171278 G09_69-19_13.ab1 leaf inoculated wit... 56 5e-006
gb|CX174846.1|CX174846 B10_69-89_04.ab1 leaf inoculated wit... 56 5e-006
gb|CX182697.1|CX182697 E08_45-55_10.ab1 leaf inoculated wit... 56 5e-006
gb|DN500621.1|DN500621 UL69F06.5pR Populus cold stressed le... 56 5e-006
gb|AJ778592.1|AJ778592 AJ778592 Populus euphratica cambium ... 48 0.001
gb|CX179309.1|CX179309 H11_45-29_15.ab1 leaf inoculated wit... 48 0.001
gb|BI130274.1|BI130274 G103P25Y Populus cambium cDNA librar... 40 0.29
gb|BI130313.1|BI130313 G103P72Y Populus cambium cDNA librar... 40 0.29
gb|BU835835.1|BU835835 T079C04 Populus apical shoot cDNA li... 40 0.29
gb|CK103107.1|CK103107 G103P72.5pR Populus tension wood cDN... 40 0.29
>gb|CX171278.1|CX171278 G09_69-19_13.ab1 leaf inoculated with Marssonia pathogen of Populus
deltoides Populus deltoides cDNA, mRNA sequence
Length = 698
Score = 56.0 bits (28), Expect = 5e-006
Identities = 31/32 (96%)
Strand = Plus / Minus
Query: 1674 tgctgatcatggggatcaacaaggagaccatt 1705
||||||||||| ||||||||||||||||||||
Sbjct: 265 tgctgatcatgaggatcaacaaggagaccatt 234
>gb|CX174846.1|CX174846 B10_69-89_04.ab1 leaf inoculated with Marssonia pathogen of Populus
deltoides Populus deltoides cDNA, mRNA sequence
Length = 680
Score = 56.0 bits (28), Expect = 5e-006
Identities = 31/32 (96%)
Strand = Plus / Minus
Query: 1674 tgctgatcatggggatcaacaaggagaccatt 1705
||||||||||| ||||||||||||||||||||
Sbjct: 247 tgctgatcatgaggatcaacaaggagaccatt 216
>gb|CX182697.1|CX182697 E08_45-55_10.ab1 leaf inoculated with Marssonia pathogen of Populus
euramericana Populus x canadensis cDNA, mRNA sequence
Length = 647
Score = 56.0 bits (28), Expect = 5e-006
Identities = 31/32 (96%)
Strand = Plus / Minus
Query: 1674 tgctgatcatggggatcaacaaggagaccatt 1705
||||||||||| ||||||||||||||||||||
Sbjct: 152 tgctgatcatgaggatcaacaaggagaccatt 121
>gb|DN500621.1|DN500621 UL69F06.5pR Populus cold stressed leaves cDNA library Populus tremula
x Populus tremuloides cDNA clone UL69F06 5', mRNA
sequence
Length = 789
Score = 56.0 bits (28), Expect = 5e-006
Identities = 31/32 (96%)
Strand = Plus / Minus
Query: 1674 tgctgatcatggggatcaacaaggagaccatt 1705
||||||||||| ||||||||||||||||||||
Sbjct: 518 tgctgatcatgaggatcaacaaggagaccatt 487
>gb|AJ778592.1|AJ778592 AJ778592 Populus euphratica cambium 3-6 months Populus euphratica
cDNA clone P0000600003C06F1, mRNA sequence
Length = 717
Score = 48.1 bits (24), Expect = 0.001
Identities = 30/32 (93%)
Strand = Plus / Minus
Query: 1674 tgctgatcatggggatcaacaaggagaccatt 1705
||||||||||| ||||||||||| ||||||||
Sbjct: 301 tgctgatcatgaggatcaacaagaagaccatt 270
>gb|CX179309.1|CX179309 H11_45-29_15.ab1 leaf inoculated with Marssonia pathogen of Populus
euramericana Populus x canadensis cDNA, mRNA sequence
Length = 269
Score = 48.1 bits (24), Expect = 0.001
Identities = 30/32 (93%)
Strand = Plus / Minus
Query: 1674 tgctgatcatggggatcaacaaggagaccatt 1705
||||||||||| |||||| |||||||||||||
Sbjct: 70 tgctgatcatgaggatcagcaaggagaccatt 39
>gb|BI130274.1|BI130274 G103P25Y Populus cambium cDNA library Populus tremula x Populus
tremuloides cDNA, mRNA sequence
Length = 425
Score = 40.1 bits (20), Expect = 0.29
Identities = 29/32 (90%)
Strand = Plus / Minus
Query: 1148 ccttctcctccccaacgatactcaatatgtga 1179
|||||||| ||||||||||| ||||| |||||
Sbjct: 140 ccttctccaccccaacgatattcaatgtgtga 109
>gb|BI130313.1|BI130313 G103P72Y Populus cambium cDNA library Populus tremula x Populus
tremuloides cDNA, mRNA sequence
Length = 220
Score = 40.1 bits (20), Expect = 0.29
Identities = 29/32 (90%)
Strand = Plus / Minus
Query: 1148 ccttctcctccccaacgatactcaatatgtga 1179
|||||||| ||||||||||| ||||| |||||
Sbjct: 116 ccttctccaccccaacgatattcaatgtgtga 85
>gb|BU835835.1|BU835835 T079C04 Populus apical shoot cDNA library Populus tremula x Populus
tremuloides cDNA 5 prime, mRNA sequence
Length = 673
Score = 40.1 bits (20), Expect = 0.29
Identities = 29/32 (90%)
Strand = Plus / Minus
Query: 1148 ccttctcctccccaacgatactcaatatgtga 1179
|||||||| ||||||||||| ||||| |||||
Sbjct: 185 ccttctccaccccaacgatattcaatgtgtga 154
>gb|CK103107.1|CK103107 G103P72.5pR Populus tension wood cDNA library Populus tremula x
Populus tremuloides cDNA clone G103P72 5', mRNA sequence
Length = 597
Score = 40.1 bits (20), Expect = 0.29
Identities = 29/32 (90%)
Strand = Plus / Minus
Query: 1148 ccttctcctccccaacgatactcaatatgtga 1179
|||||||| ||||||||||| ||||| |||||
Sbjct: 140 ccttctccaccccaacgatattcaatgtgtga 109
Database: Populus_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:49 PM
Number of letters in database: 203,408,664
Number of sequences in database: 369,679
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 247,591
Number of Sequences: 369679
Number of extensions: 247591
Number of successful extensions: 68249
Number of sequences better than 0.5: 10
Number of HSP's better than 0.5 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 68230
Number of HSP's gapped (non-prelim): 19
length of query: 1829
length of database: 203,408,664
effective HSP length: 20
effective length of query: 1809
effective length of database: 196,015,084
effective search space: 354591286956
effective search space used: 354591286956
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)