BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 3067267.2.1
(893 letters)
Database: Populus_nucl_with_EST.fasta
369,679 sequences; 203,408,664 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CK103503.1|CK103503 G120P66.5pR Populus tension wood cDN... 226 1e-057
gb|DV464781.1|DV464781 MTUNUL1.P30.G05 NUL Populus fremonti... 196 1e-048
gb|DT515939.1|DT515939 WS02429.B21.1_P06 PTxD-ICC-N-A-14 Po... 168 2e-040
gb|CK101635.1|CK101635 F104P94.5pR Populus flower cDNA libr... 155 3e-036
gb|DT511247.1|DT511247 WS02429.BR_P06 PTxD-ICC-N-A-14 Popul... 155 3e-036
gb|BI131395.1|BI131395 G120P31Y Populus cambium cDNA librar... 133 1e-029
gb|CK091516.1|CK091516 F104P94.3pR Populus flower cDNA libr... 68 6e-010
gb|CV130832.1|CV130832 X9SP05g11 Populus stem seasonal libr... 50 1e-004
gb|BU815193.1|BU815193 N038D09 Populus bark cDNA library Po... 42 0.036
>gb|CK103503.1|CK103503 G120P66.5pR Populus tension wood cDNA library Populus tremula x
Populus tremuloides cDNA clone G120P66 5', mRNA sequence
Length = 493
Score = 226 bits (114), Expect = 1e-057
Identities = 342/418 (81%)
Strand = Plus / Plus
Query: 60 acaggaaagacaatgctagctaaagctgtggctactgagtgcaaaacaacttttttcaat 119
||||||||||||||||| || || || || ||||| ||||||||||| || |||||||||
Sbjct: 44 acaggaaagacaatgcttgcgaaggcggttgctacagagtgcaaaaccacatttttcaat 103
Query: 120 atttctgcctcgtcgattgtaagcaagtggcgcggtgactcggagaaactagtgaaagtg 179
||||| || || || | || ||||||||||| ||||| || ||||| || | || |||
Sbjct: 104 atttcagcatcttcagtggttagcaagtggcggggtgattcagagaagttaataaaggtg 163
Query: 180 ttattcgaacttgcaaggcatcatgcaccatctactattttccttgatgagattgatgct 239
||||| || ||||| ||||| ||||||||||| ||||| || |||||||| || ||||||
Sbjct: 164 ttatttgagcttgctaggcaccatgcaccatcaactatatttcttgatgaaatcgatgct 223
Query: 240 atcattagtcaacgtggtgaagctcgtagtgaacatgaagctagccggcgattgaaaact 299
|| || |||||||||||||||||||| ||||| |||||||| || |||| ||||| |||
Sbjct: 224 attatcagtcaacgtggtgaagctcgcagtgagcatgaagcaagtaggcgtttgaagact 283
Query: 300 gagctattaatacagatggatgggttgactaagacagatgagcttgtttttgttctagca 359
|| || | |||||||||||||| |||||| ||||| ||||| ||||||||| | |||
Sbjct: 284 gaactgctcatacagatggatggtttgactcgcacagacgagctcgtttttgttttggca 343
Query: 360 gcaacaaatttaccatgggagttggatgcagcaatgctgcgtcggctggagaagcgtatt 419
|| || ||| | || ||||||||||||||||| ||||| || || || |||||||| |||
Sbjct: 344 gcgactaatctcccttgggagttggatgcagctatgctccggcgtcttgagaagcgcatt 403
Query: 420 cttgttccattgccagagccggatgctagacatgctatgtttgaagagctcctgccat 477
||||| || | ||||| || || |||||| || ||||||||||| ||||||||||
Sbjct: 404 cttgtaccccttccagaaccagaagctagagcagccatgtttgaagaactcctgccat 461
>gb|DV464781.1|DV464781 MTUNUL1.P30.G05 NUL Populus fremontii x Populus angustifolia cDNA,
mRNA sequence
Length = 878
Score = 196 bits (99), Expect = 1e-048
Identities = 363/451 (80%)
Strand = Plus / Plus
Query: 27 tggaaaggcatattactgtttggtccacctggaacaggaaagacaatgctagctaaagct 86
||||||||||| | || ||||| || || || ||||||||||||||||| || || ||
Sbjct: 244 tggaaaggcattcttctttttggccctccagggacaggaaagacaatgcttgcgaaggcg 303
Query: 87 gtggctactgagtgcaaaacaacttttttcaatatttctgcctcgtcgattgtaagcaag 146
|| ||||| || |||||||| || |||||||||||||| || || || | || ||||||
Sbjct: 304 gttgctacagaatgcaaaaccacatttttcaatatttcagcatcttcagtggttagcaag 363
Query: 147 tggcgcggtgactcggagaaactagtgaaagtgttattcgaacttgcaaggcatcatgca 206
||||| ||||| || ||||| || | || |||||||| || ||||| ||||| ||||||
Sbjct: 364 tggcggggtgattcagagaagttaataaaggtgttatttgagcttgctaggcaccatgca 423
Query: 207 ccatctactattttccttgatgagattgatgctatcattagtcaacgtggtgaagctcgt 266
||||| ||||| || |||||||| || |||||||| || ||||||||||||||||||||
Sbjct: 424 ccatcaactatatttcttgatgaaatcgatgctattatcagtcaacgtggtgaagctcgc 483
Query: 267 agtgaacatgaagctagccggcgattgaaaactgagctattaatacagatggatgggttg 326
||||| |||||||| || |||| ||||| || || || | |||||||||||||| |||
Sbjct: 484 agtgagcatgaagcaagtaggcgtttgaagaccgaactgctcatacagatggatggtttg 543
Query: 327 actaagacagatgagcttgtttttgttctagcagcaacaaatttaccatgggagttggat 386
| | ||| | ||||| ||||||||| | ||||| || ||| | || ||||||||||||
Sbjct: 544 aatcgcacaaacgagctcgtttttgttttggcagcgactaatctcccttgggagttggat 603
Query: 387 gcagcaatgctgcgtcggctggagaagcgtattcttgttccattgccagagccggatgct 446
||||| ||||| || || || |||||||| |||||||| || | ||||| || || |||
Sbjct: 604 gcagctatgctccggcgtcttgagaagcgaattcttgtaccccttccagaaccagaagct 663
Query: 447 agacatgctatgtttgaagagctcctgccat 477
||| || ||||||||||| ||||||||||
Sbjct: 664 agagcagccatgtttgaagaactcctgccat 694
>gb|DT515939.1|DT515939 WS02429.B21.1_P06 PTxD-ICC-N-A-14 Populus trichocarpa x Populus
deltoides cDNA clone WS02429_P06 3', mRNA sequence
Length = 861
Score = 168 bits (85), Expect = 2e-040
Identities = 304/377 (80%)
Strand = Plus / Minus
Query: 101 caaaacaacttttttcaatatttctgcctcgtcgattgtaagcaagtggcgcggtgactc 160
|||||| || |||||||||||||| || || || | || ||||||||||| ||||| ||
Sbjct: 861 caaaaccacatttttcaatatttcagcatcttcagtggttagcaagtggcggggtgattc 802
Query: 161 ggagaaactagtgaaagtgttattcgaacttgcaaggcatcatgcaccatctactatttt 220
||||| || | || |||||||| || |||| ||||| ||||||||||| ||||| ||
Sbjct: 801 agagaagttaataaaggtgttatttgagcttgttaggcaccatgcaccatcaactatatt 742
Query: 221 ccttgatgagattgatgctatcattagtcaacgtggtgaagctcgtagtgaacatgaagc 280
|||||||| || |||||||| || |||||||||||||||||||| ||||| ||||||||
Sbjct: 741 tcttgatgaaatcgatgctattatcagtcaacgtggtgaagctcgcagtgagcatgaagc 682
Query: 281 tagccggcgattgaaaactgagctattaatacagatggatgggttgactaagacagatga 340
|| |||| ||||| || || || | |||||||||||||| |||||| ||| | ||
Sbjct: 681 aagtaggcgtttgaagaccgaactgctcatacagatggatggtttgactcgcacaaacga 622
Query: 341 gcttgtttttgttctagcagcaacaaatttaccatgggagttggatgcagcaatgctgcg 400
||| ||||||||| | ||||| || ||| | || ||||||||||||||||| ||||| ||
Sbjct: 621 gctcgtttttgttttggcagcgactaatctcccttgggagttggatgcagctatgctccg 562
Query: 401 tcggctggagaagcgtattcttgttccattgccagagccggatgctagacatgctatgtt 460
|| || |||||||| |||||||| || | ||||| || || |||||| || |||||
Sbjct: 561 gcgtcttgagaagcgaattcttgtaccccttccagaaccagaagctagagcagccatgtt 502
Query: 461 tgaagagctcctgccat 477
|||||| ||||||||||
Sbjct: 501 tgaagaactcctgccat 485
>gb|CK101635.1|CK101635 F104P94.5pR Populus flower cDNA library Populus trichocarpa cDNA
clone F104P94 5', mRNA sequence
Length = 640
Score = 155 bits (78), Expect = 3e-036
Identities = 237/290 (81%)
Strand = Plus / Plus
Query: 60 acaggaaagacaatgctagctaaagctgtggctactgagtgcaaaacaacttttttcaat 119
||||| ||||||||||| || || ||||| ||||| ||||||||||| || |||||||||
Sbjct: 241 acagggaagacaatgctcgcaaaggctgttgctacagagtgcaaaaccacatttttcaat 300
Query: 120 atttctgcctcgtcgattgtaagcaagtggcgcggtgactcggagaaactagtgaaagtg 179
|| || || || || | || ||||| ||||| ||||| || |||||| || | || ||
Sbjct: 301 atctcagcatcttcagtggttagcaaatggcggggtgattcagagaaattaataaaggtt 360
Query: 180 ttattcgaacttgcaaggcatcatgcaccatctactattttccttgatgagattgatgct 239
||||| || ||||| |||||||| |||||||| ||||| || |||||||| |||||||||
Sbjct: 361 ttatttgagcttgctaggcatcacgcaccatcaactatatttcttgatgaaattgatgct 420
Query: 240 atcattagtcaacgtggtgaagctcgtagtgaacatgaagctagccggcgattgaaaact 299
|| || |||||||||||||||||| | ||||| |||||||| || |||| ||||| |||
Sbjct: 421 attatcagtcaacgtggtgaagctagcagtgagcatgaagcaagtaggcgtttgaagact 480
Query: 300 gagctattaatacagatggatgggttgactaagacagatgagcttgtttt 349
|| || | |||||||||||||| |||||| ||| | |||||||||||
Sbjct: 481 gaactgctcatacagatggatggtttgactcgcacaaaggagcttgtttt 530
>gb|DT511247.1|DT511247 WS02429.BR_P06 PTxD-ICC-N-A-14 Populus trichocarpa x Populus
deltoides cDNA clone WS02429_P06 5', mRNA sequence
Length = 870
Score = 155 bits (78), Expect = 3e-036
Identities = 210/254 (82%)
Strand = Plus / Plus
Query: 27 tggaaaggcatattactgtttggtccacctggaacaggaaagacaatgctagctaaagct 86
||||||||||| | || ||||| || || || ||||||||||||||||| || || ||
Sbjct: 611 tggaaaggcattcttctttttggccctccagggacaggaaagacaatgcttgcgaaggcg 670
Query: 87 gtggctactgagtgcaaaacaacttttttcaatatttctgcctcgtcgattgtaagcaag 146
|| ||||| ||||||||||| || |||||||||||||| || || || | || ||||||
Sbjct: 671 gttgctacagagtgcaaaaccacatttttcaatatttcagcatcttcagtggttagcaag 730
Query: 147 tggcgcggtgactcggagaaactagtgaaagtgttattcgaacttgcaaggcatcatgca 206
||||| ||||| || ||||| || | || |||||||| || ||||| ||||| ||||||
Sbjct: 731 tggcggggtgattcagagaagttaataaaggtgttatttgagcttgctaggcaccatgca 790
Query: 207 ccatctactattttccttgatgagattgatgctatcattagtcaacgtggtgaagctcgt 266
||||| ||||| || |||||||| || |||||||| || ||||||||||||||||||||
Sbjct: 791 ccatcaactatatttcttgatgaaatcgatgctattatcagtcaacgtggtgaagctcgc 850
Query: 267 agtgaacatgaagc 280
||||| ||||||||
Sbjct: 851 agtgagcatgaagc 864
>gb|BI131395.1|BI131395 G120P31Y Populus cambium cDNA library Populus tremula x Populus
tremuloides cDNA, mRNA sequence
Length = 301
Score = 133 bits (67), Expect = 1e-029
Identities = 200/243 (82%), Gaps = 1/243 (0%)
Strand = Plus / Plus
Query: 60 acaggaaagacaatgctagctaaagctgtggctactgagtgcaaaacaacttttttcaat 119
||||||||||||||||| || || || || ||||| ||||||||||| || ||||||| |
Sbjct: 46 acaggaaagacaatgcttgcgaaggcggttgctacagagtgcaaaaccacatttttcagt 105
Query: 120 atttctgcctcgtcgattgtaagcaagtggcgcggtgactcggagaaactagtgaaagtg 179
||||| || || || | || ||||||||||| ||||| || ||||| || | || |||
Sbjct: 106 atttcagcatcttcagtggttagcaagtggcggggtgattcagagaagttaataaaggtg 165
Query: 180 ttattcgaacttgcaaggcatcatgcaccatctactattttccttg-atgagattgatgc 238
||||| || ||||| ||||| ||||||||||| ||||| || |||| |||| || |||||
Sbjct: 166 ttatttgagcttgctaggcaccatgcaccatcaactatatttcttgcatgaaatcgatgc 225
Query: 239 tatcattagtcaacgtggtgaagctcgtagtgaacatgaagctagccggcgattgaaaac 298
||| || |||||||||||||||||||| ||||| |||||||| || |||| ||||| ||
Sbjct: 226 tattatcagtcaacgtggtgaagctcgcagtgagcatgaagcaagtaggcgtttgaagac 285
Query: 299 tga 301
|||
Sbjct: 286 tga 288
>gb|CK091516.1|CK091516 F104P94.3pR Populus flower cDNA library Populus trichocarpa cDNA
clone F104P94 3', mRNA sequence
Length = 766
Score = 67.9 bits (34), Expect = 6e-010
Identities = 136/170 (80%)
Strand = Plus / Minus
Query: 255 ggtgaagctcgtagtgaacatgaagctagccggcgattgaaaactgagctattaatacag 314
||||||||| | ||||| |||||||| || |||| ||||| ||||| || | ||||||
Sbjct: 766 ggtgaagctagcagtgagcatgaagcaagtaggcgtttgaagactgaactgctcatacag 707
Query: 315 atggatgggttgactaagacagatgagcttgtttttgttctagcagcaacaaatttacca 374
|||||||| |||||| ||| | ||||||||||||||| | || || || ||| | ||
Sbjct: 706 atggatggtttgactcgcacaaaggagcttgtttttgttttggcggcgactaatctccct 647
Query: 375 tgggagttggatgcagcaatgctgcgtcggctggagaagcgtattcttgt 424
||||| |||||||| || ||||| || || || |||||||| ||||||||
Sbjct: 646 tgggaattggatgcggccatgctccggcgtcttgagaagcgaattcttgt 597
>gb|CV130832.1|CV130832 X9SP05g11 Populus stem seasonal library Populus deltoides cDNA,
mRNA sequence
Length = 777
Score = 50.1 bits (25), Expect = 1e-004
Identities = 46/53 (86%)
Strand = Plus / Plus
Query: 45 tttggtccacctggaacaggaaagacaatgctagctaaagctgtggctactga 97
||||| || |||||||| |||||||| ||||||||||| || ||||| |||||
Sbjct: 219 tttggacctcctggaactggaaagactatgctagctaaggcagtggcaactga 271
>gb|BU815193.1|BU815193 N038D09 Populus bark cDNA library Populus tremula x Populus
tremuloides cDNA 5 prime, mRNA sequence
Length = 604
Score = 42.1 bits (21), Expect = 0.036
Identities = 45/53 (84%)
Strand = Plus / Plus
Query: 45 tttggtccacctggaacaggaaagacaatgctagctaaagctgtggctactga 97
||||| || ||||| || |||||||| ||||||||||| || ||||| |||||
Sbjct: 151 tttggacctcctggtactggaaagactatgctagctaaggcagtggcaactga 203
Database: Populus_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:49 PM
Number of letters in database: 203,408,664
Number of sequences in database: 369,679
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 126,132
Number of Sequences: 369679
Number of extensions: 126132
Number of successful extensions: 34426
Number of sequences better than 0.5: 9
Number of HSP's better than 0.5 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 34401
Number of HSP's gapped (non-prelim): 11
length of query: 893
length of database: 203,408,664
effective HSP length: 19
effective length of query: 874
effective length of database: 196,384,763
effective search space: 171640282862
effective search space used: 171640282862
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)