BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 3067213.2.1
(924 letters)
Database: Populus_nucl_with_EST.fasta
369,679 sequences; 203,408,664 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|DT508835.1|DT508835 WS02422.BR_B02 PTxD-ICC-N-A-14 Popul... 220 7e-056
gb|CV242270.1|CV242270 WS02514.B21.1_J18 PT-MB-N-A-15 Popul... 218 3e-055
gb|DT520899.1|DT520899 WS02448.B21_N17 PTxD-ICC-N-A-14 Popu... 218 3e-055
gb|DT520901.1|DT520901 WS02448.B21_N19 PTxD-ICC-N-A-14 Popu... 218 3e-055
gb|CA824730.1|CA824730 R47C07 two-month-old roots from clon... 204 4e-051
gb|BU867805.1|BU867805 M104E10 Populus flower cDNA library ... 188 3e-046
gb|DT488257.1|DT488257 WS02535.B21_O22 PT-MB-N-A-15 Populus... 184 4e-045
gb|BU891061.1|BU891061 P045D09 Populus petioles cDNA librar... 167 9e-040
gb|DT513443.1|DT513443 WS02422.B21_B02 PTxD-ICC-N-A-14 Popu... 153 1e-035
gb|BU826676.1|BU826676 UK123TD11 Populus apical shoot cDNA ... 103 1e-020
gb|BU871757.1|BU871757 Q034B05 Populus flower cDNA library ... 103 1e-020
gb|BU873174.1|BU873174 Q052A08 Populus flower cDNA library ... 103 1e-020
gb|BU889261.1|BU889261 P018F09 Populus petioles cDNA librar... 103 1e-020
gb|BU870532.1|BU870532 Q013G04 Populus flower cDNA library ... 88 7e-016
gb|DT470091.1|DT470091 WS01919.C21_N14 PT-DX-N-A-10 Populus... 88 7e-016
gb|BU897504.1|BU897504 X058H02 Populus wood cDNA library Po... 86 3e-015
gb|DT500890.1|DT500890 PX0019.BR_L02 PT-X-FL-A-1 Populus tr... 66 3e-009
gb|BU829781.1|BU829781 K067P31P Populus apical shoot cDNA l... 58 6e-007
gb|CN520269.1|CN520269 GQ0107.B3_N05 GQ010 Populus trichoca... 58 6e-007
gb|CV235386.1|CV235386 WS01218.B21_O19 PT-GT-FL-A-3 Populus... 58 6e-007
gb|CV252774.1|CV252774 PX0015.B21_O23 PT-X-FL-A-1 Populus t... 58 6e-007
gb|CV252969.1|CV252969 PX0019.B21.1_L02 PT-X-FL-A-1 Populus... 58 6e-007
gb|CV269592.1|CV269592 WS0208.B21_K22 PTxN-IB-N-A-11 Populu... 58 6e-007
gb|CV275864.1|CV275864 WS0177.B21_O02 PTxD-NR-A-8 Populus t... 58 6e-007
gb|DN488101.1|DN488101 R032D11.3pR Populus root cDNA librar... 58 6e-007
gb|DN490693.1|DN490693 UL76PH09.3pR Populus cold stressed l... 58 6e-007
gb|DT491616.1|DT491616 WS02548.C21_E07 PT-MB-N-A-15 Populus... 58 6e-007
gb|DT520719.1|DT520719 WS02448.B21_F15 PTxD-ICC-N-A-14 Popu... 58 6e-007
gb|CX186076.1|CX186076 E12_45-26_10.ab1 leaf inoculated wit... 54 1e-005
gb|BP933938.1|BP933938 BP933938 full-length enriched poplar... 52 4e-005
gb|BU813633.1|BU813633 N012H12 Populus bark cDNA library Po... 50 2e-004
gb|BP926366.1|BP926366 BP926366 full-length enriched poplar... 50 2e-004
gb|BU810845.1|BU810845 UL76PH09 Populus leaf cDNA library P... 48 6e-004
gb|DN500684.1|DN500684 UL76PH09.5pR Populus cold stressed l... 48 6e-004
gb|DT500586.1|DT500586 PX0015.BR_O23 PT-X-FL-A-1 Populus tr... 48 6e-004
gb|AF185574.2| Populus tremuloides transcription factor MAG... 42 0.037
>gb|DT508835.1|DT508835 WS02422.BR_B02 PTxD-ICC-N-A-14 Populus trichocarpa x Populus
deltoides cDNA clone WS02422_B02 5', mRNA sequence
Length = 919
Score = 220 bits (111), Expect = 7e-056
Identities = 452/566 (79%)
Strand = Plus / Minus
Query: 307 tggggcatcgacataccaccagatacaacaatttcgatgccttcacgcacagaaagattt 366
|||||||||||||| || ||||| ||||| |||||||| ||||| || || || |||||
Sbjct: 750 tggggcatcgacatcccnccagagacaacgatttcgattccttctcggactgagagattg 691
Query: 367 ggccttatgacatcctttgaattcaccatgaagatatcaccaatgtaaagatggttcgtt 426
|| || || ||||| || | | | |||| ||| |||||||||||||| ||||| || ||
Sbjct: 690 ggtctgataacatctttggtagtaaccaggaatatatcaccaatgtacagatgatttgtg 631
Query: 427 gggacatagacgcagtaaagatcttcttgaccagaataactctggagggatactgacgat 486
|| |||||||| ||| | || ||||||| ||||| || ||||||||| || | ||
Sbjct: 630 ggaacatagacacagcatagctcttcttctccagagtagttctggagggtcacagttgaa 571
Query: 487 gtgatgaaaccaaacgcatattctccaacacgaggatgccttatgatgaccacttccttg 546
|| ||||| ||||| ||||| || |||| ||| ||||| ||||||||| |||||||||||
Sbjct: 570 gtaatgaacccaaaagcatactcgccaatacgtggatgtcttatgatggccacttccttg 511
Query: 547 aacgcctgtttgttctgatctggtgatattgcagcactaatttgcttcgatgcattgtag 606
|| ||||| |||| || ||||| ||||| ||||||||||||||||| || || || ||
Sbjct: 510 aaagcctgagtgttttggtctggggatatggcagcactaatttgcttggaagcgttataa 451
Query: 607 atatgacgaacaagaggcatgcgcttaataatccactcgccaaggctaaggacagatgcc 666
||||| ||||||| ||||| | || |||| |||||| |||||||| ||||| |||||
Sbjct: 450 atatggcgaacaaatggcatccttttgataaaccactctccaaggctcaggacggatgct 391
Query: 667 ccaagccaagatgacataaagactccgatcaaaaatatgaaagtaacagatgtgacaaag 726
|| | |||||||||||| || || || | ||| || ||||| || | || || | |||
Sbjct: 390 cccaaccaagatgacatgaataccccaaccaagaaaatgaatgttagggaggttataaat 331
Query: 727 ccaagaccgaatatgttgattcccagttgagcatagattggagagaagaatccatcaaca 786
|||||||| || || | ||||| ||||| ||||| || ||||||||||||||||| |||
Sbjct: 330 ccaagaccaaagatatcaattccaagttgggcataaatcggagagaagaatccatccaca 271
Query: 787 aaatgaatgaaccaccaggtgatgtagaacgttattgctatggggaagagaattacacat 846
|| ||||| |||||||| || |||||||| || ||||| ||||| || || || ||||||
Sbjct: 270 aagtgaataaaccaccatgttatgtagaaggtgattgcaatgggaaacaggatgacacat 211
Query: 847 ccagtcatgaacttctttgaagccca 872
|| |||||||| || |||||||||||
Sbjct: 210 cctgtcatgaatttttttgaagccca 185
>gb|CV242270.1|CV242270 WS02514.B21.1_J18 PT-MB-N-A-15 Populus trichocarpa cDNA clone
WS02514_J18 3', mRNA sequence
Length = 874
Score = 218 bits (110), Expect = 3e-055
Identities = 461/578 (79%)
Strand = Plus / Plus
Query: 295 gttgacagaatttggggcatcgacataccaccagatacaacaatttcgatgccttcacgc 354
|||||||| || |||||||| ||||| || ||||| || |||||||| || ||||| ||
Sbjct: 255 gttgacaggatctggggcattgacatccccccagacaccacaatttcaattccttctcgg 314
Query: 355 acagaaagatttggccttatgacatcctttgaattcaccatgaagatatcaccaatgtaa 414
|| |||||||| || || || |||||||| | ||| || | ||| ||||| ||||||||
Sbjct: 315 actgaaagattgggtctgataacatccttggtattgactaggaatatatctccaatgtac 374
Query: 415 agatggttcgttgggacatagacgcagtaaagatcttcttgaccagaataactctggagg 474
||||| ||||| || ||||| || ||| | | || |||| ||||| || ||||||||
Sbjct: 375 agatgattcgtgggaacatacacacagcataactcctcttctccagagtagttctggagg 434
Query: 475 gatactgacgatgtgatgaaaccaaacgcatattctccaacacgaggatgccttatgatg 534
|| || || || ||||| ||||| |||||||| || | ||| ||||| ||||| |||
Sbjct: 435 atgacagatgaagtaatgaacccaaaagcatattcaccgatacgtggatgtcttataatg 494
Query: 535 accacttccttgaacgcctgtttgttctgatctggtgatattgcagcactaatttgcttc 594
||||||||||||| || || | || || ||||||||||| |||||||||||||||||
Sbjct: 495 gccacttccttgaaagcttgagtattttggtctggtgatatggcagcactaatttgcttg 554
Query: 595 gatgcattgtagatatgacgaacaagaggcatgcgcttaataatccactcgccaaggcta 654
|| ||||| || ||||||||||||| ||||| || || |||| |||||| ||||||||
Sbjct: 555 gaggcattataaatatgacgaacaaatggcatccgtttgataaaccactccccaaggctc 614
Query: 655 aggacagatgccccaagccaagatgacataaagactccgatcaaaaatatgaaagtaaca 714
|||||||| || || | |||||||||||| || || || | ||| || ||||| || |
Sbjct: 615 aggacagaagctcccaaccaagatgacatgaataccccaaccaagaaaatgaatgttatg 674
Query: 715 gatgtgacaaagccaagaccgaatatgttgattcccagttgagcatagattggagagaag 774
|| || | ||| |||||||| || || | ||||| || || ||||||||||||||||||
Sbjct: 675 gaggttataaatccaagaccaaagatatcaattccaagatgggcatagattggagagaag 734
Query: 775 aatccatcaacaaaatgaatgaaccaccaggtgatgtagaacgttattgctatggggaag 834
|||||||| ||||| |||| |||||||| || |||||||| || ||||| ||||| ||
Sbjct: 735 aatccatccacaaagtgaacaaaccaccatgttatgtagaaagtgattgcaatgggaaac 794
Query: 835 agaattacacatccagtcatgaacttctttgaagccca 872
|| || |||||||| ||||||||||| |||||||||||
Sbjct: 795 agtatgacacatcctgtcatgaacttttttgaagccca 832
>gb|DT520899.1|DT520899 WS02448.B21_N17 PTxD-ICC-N-A-14 Populus trichocarpa x Populus
deltoides cDNA clone WS02448_N17 3', mRNA sequence
Length = 871
Score = 218 bits (110), Expect = 3e-055
Identities = 461/578 (79%)
Strand = Plus / Plus
Query: 295 gttgacagaatttggggcatcgacataccaccagatacaacaatttcgatgccttcacgc 354
|||||||| || |||||||| ||||| || ||||| || |||||||| || ||||| ||
Sbjct: 261 gttgacaggatctggggcattgacatccccccagacaccacaatttcaattccttctcgg 320
Query: 355 acagaaagatttggccttatgacatcctttgaattcaccatgaagatatcaccaatgtaa 414
|| |||||||| || || || |||||||| | ||| || | ||| ||||| ||||||||
Sbjct: 321 actgaaagattgggtctgataacatccttggtattgactaggaatatatctccaatgtac 380
Query: 415 agatggttcgttgggacatagacgcagtaaagatcttcttgaccagaataactctggagg 474
||||| ||||| || ||||| || ||| | | || |||| ||||| || ||||||||
Sbjct: 381 agatgattcgtgggaacatacacacagcataactcctcttctccagagtagttctggagg 440
Query: 475 gatactgacgatgtgatgaaaccaaacgcatattctccaacacgaggatgccttatgatg 534
|| || || || ||||| ||||| |||||||| || | ||| ||||| ||||| |||
Sbjct: 441 atgacagatgaagtaatgaacccaaaagcatattcaccgatacgtggatgtcttataatg 500
Query: 535 accacttccttgaacgcctgtttgttctgatctggtgatattgcagcactaatttgcttc 594
||||||||||||| || || | || || ||||||||||| |||||||||||||||||
Sbjct: 501 gccacttccttgaaagcttgagtattttggtctggtgatatggcagcactaatttgcttg 560
Query: 595 gatgcattgtagatatgacgaacaagaggcatgcgcttaataatccactcgccaaggcta 654
|| ||||| || ||||||||||||| ||||| || || |||| |||||| ||||||||
Sbjct: 561 gaggcattataaatatgacgaacaaatggcatccgtttgataaaccactccccaaggctc 620
Query: 655 aggacagatgccccaagccaagatgacataaagactccgatcaaaaatatgaaagtaaca 714
|||||||| || || | |||||||||||| || || || | ||| || ||||| || |
Sbjct: 621 aggacagaagctcccaaccaagatgacatgaataccccaaccaagaaaatgaatgttatg 680
Query: 715 gatgtgacaaagccaagaccgaatatgttgattcccagttgagcatagattggagagaag 774
|| || | ||| |||||||| || || | ||||| || || ||||||||||||||||||
Sbjct: 681 gaggttataaatccaagaccaaagatatcaattccaagatgggcatagattggagagaag 740
Query: 775 aatccatcaacaaaatgaatgaaccaccaggtgatgtagaacgttattgctatggggaag 834
|||||||| ||||| |||| |||||||| || |||||||| || ||||| ||||| ||
Sbjct: 741 aatccatccacaaagtgaacaaaccaccatgttatgtagaaagtgattgcaatgggaaac 800
Query: 835 agaattacacatccagtcatgaacttctttgaagccca 872
|| || |||||||| ||||||||||| |||||||||||
Sbjct: 801 agtatgacacatcctgtcatgaacttttttgaagccca 838
>gb|DT520901.1|DT520901 WS02448.B21_N19 PTxD-ICC-N-A-14 Populus trichocarpa x Populus
deltoides cDNA clone WS02448_N19 3', mRNA sequence
Length = 876
Score = 218 bits (110), Expect = 3e-055
Identities = 461/578 (79%)
Strand = Plus / Plus
Query: 295 gttgacagaatttggggcatcgacataccaccagatacaacaatttcgatgccttcacgc 354
|||||||| || |||||||| ||||| || ||||| || |||||||| || ||||| ||
Sbjct: 262 gttgacaggatctggggcattgacatccccccagacaccacaatttcaattccttctcgg 321
Query: 355 acagaaagatttggccttatgacatcctttgaattcaccatgaagatatcaccaatgtaa 414
|| |||||||| || || || |||||||| | ||| || | ||| ||||| ||||||||
Sbjct: 322 actgaaagattgggtctgataacatccttggtattgactaggaatatatctccaatgtac 381
Query: 415 agatggttcgttgggacatagacgcagtaaagatcttcttgaccagaataactctggagg 474
||||| ||||| || ||||| || ||| | | || |||| ||||| || ||||||||
Sbjct: 382 agatgattcgtgggaacatacacacagcataactcctcttctccagagtagttctggagg 441
Query: 475 gatactgacgatgtgatgaaaccaaacgcatattctccaacacgaggatgccttatgatg 534
|| || || || ||||| ||||| |||||||| || | ||| ||||| ||||| |||
Sbjct: 442 atgacagatgaagtaatgaacccaaaagcatattcaccgatacgtggatgtcttataatg 501
Query: 535 accacttccttgaacgcctgtttgttctgatctggtgatattgcagcactaatttgcttc 594
||||||||||||| || || | || || ||||||||||| |||||||||||||||||
Sbjct: 502 gccacttccttgaaagcttgagtattttggtctggtgatatggcagcactaatttgcttg 561
Query: 595 gatgcattgtagatatgacgaacaagaggcatgcgcttaataatccactcgccaaggcta 654
|| ||||| || ||||||||||||| ||||| || || |||| |||||| ||||||||
Sbjct: 562 gaggcattataaatatgacgaacaaatggcatccgtttgataaaccactccccaaggctc 621
Query: 655 aggacagatgccccaagccaagatgacataaagactccgatcaaaaatatgaaagtaaca 714
|||||||| || || | |||||||||||| || || || | ||| || ||||| || |
Sbjct: 622 aggacagaagctcccaaccaagatgacatgaataccccaaccaagaaaatgaatgttatg 681
Query: 715 gatgtgacaaagccaagaccgaatatgttgattcccagttgagcatagattggagagaag 774
|| || | ||| |||||||| || || | ||||| || || ||||||||||||||||||
Sbjct: 682 gaggttataaatccaagaccaaagatatcaattccaagatgggcatagattggagagaag 741
Query: 775 aatccatcaacaaaatgaatgaaccaccaggtgatgtagaacgttattgctatggggaag 834
|||||||| ||||| |||| |||||||| || |||||||| || ||||| ||||| ||
Sbjct: 742 aatccatccacaaagtgaacaaaccaccatgttatgtagaaagtgattgcaatgggaaac 801
Query: 835 agaattacacatccagtcatgaacttctttgaagccca 872
|| || |||||||| ||||||||||| |||||||||||
Sbjct: 802 agtatgacacatcctgtcatgaacttttttgaagccca 839
>gb|CA824730.1|CA824730 R47C07 two-month-old roots from clone 'Beaupre' Populus trichocarpa
x Populus deltoides cDNA 5', mRNA sequence
Length = 618
Score = 204 bits (103), Expect = 4e-051
Identities = 313/383 (81%)
Strand = Plus / Minus
Query: 490 atgaaaccaaacgcatattctccaacacgaggatgccttatgatgaccacttccttgaac 549
||||| ||||| |||||||| || | ||| ||||| ||||| ||| |||||||||||||
Sbjct: 541 atgaacccaaaagcatattcaccgatacgtggatgtcttataatggccacttccttgaaa 482
Query: 550 gcctgtttgttctgatctggtgatattgcagcactaatttgcttcgatgcattgtagata 609
|| || | || || ||||||||||| ||||||||||||||||| || ||||| || |||
Sbjct: 481 gcttgagtattttggtctggtgatatggcagcactaatttgcttggaggcattataaata 422
Query: 610 tgacgaacaagaggcatgcgcttaataatccactcgccaaggctaaggacagatgcccca 669
|||||||||| ||||| || || |||| |||||| |||||||| |||||||| || ||
Sbjct: 421 tgacgaacaaatggcatccgtttgataaaccactccccaaggctcaggacagaagctccc 362
Query: 670 agccaagatgacataaagactccgatcaaaaatatgaaagtaacagatgtgacaaagcca 729
| |||||||||||| || || || ||||| || ||||| || | || || | ||| |||
Sbjct: 361 aaccaagatgacatgaataccccaatcaagaaaatgaatgttatggaggttataaatcca 302
Query: 730 agaccgaatatgttgattcccagttgagcatagattggagagaagaatccatcaacaaaa 789
||||| || || | ||||| || || |||||||||||||||||||||||||| |||||
Sbjct: 301 agaccaaagatatcaattccaagatgggcatagattggagagaagaatccatccacaaag 242
Query: 790 tgaatgaaccaccaggtgatgtagaacgttattgctatggggaagagaattacacatcca 849
|||| |||||||| || |||||||| || ||||| ||||| || || || ||||||||
Sbjct: 241 tgaacaaaccaccatgttatgtagaaagtgattgcaatgggaaacagtatgacacatcct 182
Query: 850 gtcatgaacttctttgaagccca 872
||||||||||| |||||||||||
Sbjct: 181 gtcatgaacttttttgaagccca 159
>gb|BU867805.1|BU867805 M104E10 Populus flower cDNA library Populus trichocarpa cDNA 5
prime, mRNA sequence
Length = 734
Score = 188 bits (95), Expect = 3e-046
Identities = 443/559 (79%)
Strand = Plus / Minus
Query: 314 tcgacataccaccagatacaacaatttcgatgccttcacgcacagaaagatttggcctta 373
||||||| || ||||| ||||| |||||||| ||||| || || || ||||| || || |
Sbjct: 734 tcgacatccccccagagacaactatttcgattccttctcggactgagagattgggtctga 675
Query: 374 tgacatcctttgaattcaccatgaagatatcaccaatgtaaagatggttcgttgggacat 433
| ||||| || | | | |||| ||| |||||||||||||| ||||| || || || ||||
Sbjct: 674 taacatctttggtagtaaccaggaatatatcaccaatgtacagatgatttgtgggaacat 615
Query: 434 agacgcagtaaagatcttcttgaccagaataactctggagggatactgacgatgtgatga 493
|||| ||| | || |||||| ||||| || ||||||||| || | || || ||||
Sbjct: 614 agacacagcatagcacttcttctccagagtagttctggagggtcacagttgaagtaatga 555
Query: 494 aaccaaacgcatattctccaacacgaggatgccttatgatgaccacttccttgaacgcct 553
| ||||| ||||| || |||| || ||||| ||||||||| ||||||||||||| ||||
Sbjct: 554 acccaaaagcatactcgccaatccgtggatgtcttatgatggccacttccttgaaagcct 495
Query: 554 gtttgttctgatctggtgatattgcagcactaatttgcttcgatgcattgtagatatgac 613
| |||| || ||||| ||||| ||||||||||||||||| || || || || ||||| |
Sbjct: 494 gagtgttttggtctggggatatggcagcactaatttgcttggaagcgttataaatatggc 435
Query: 614 gaacaagaggcatgcgcttaataatccactcgccaaggctaaggacagatgccccaagcc 673
|||||| ||||| | || |||| |||||| |||||||| ||||| ||||| || | ||
Sbjct: 434 gaacaaatggcatccttttgataaaccactctccaaggctcaggacggatgctcccaacc 375
Query: 674 aagatgacataaagactccgatcaaaaatatgaaagtaacagatgtgacaaagccaagac 733
|||||||||| || || || | ||| || ||||| || | || || | ||| |||||||
Sbjct: 374 aagatgacatgaataccccaaccaagaaaatgaatgttagggaggttataaatccaagac 315
Query: 734 cgaatatgttgattcccagttgagcatagattggagagaagaatccatcaacaaaatgaa 793
| || || | ||||| ||||| ||||| || ||||||||||||||||| ||||| ||||
Sbjct: 314 caaagatatcaattccaagttgggcataaatcggagagaagaatccatccacaaagtgaa 255
Query: 794 tgaaccaccaggtgatgtagaacgttattgctatggggaagagaattacacatccagtca 853
| |||||||| || |||||||| || ||||| ||||| || || || |||||||| ||||
Sbjct: 254 taaaccaccatgttatgtagaaggtgattgcaatgggaaacaggatgacacatcctgtca 195
Query: 854 tgaacttctttgaagccca 872
|||| || |||||||||||
Sbjct: 194 tgaatttttttgaagccca 176
>gb|DT488257.1|DT488257 WS02535.B21_O22 PT-MB-N-A-15 Populus trichocarpa cDNA clone
WS02535_O22 3', mRNA sequence
Length = 866
Score = 184 bits (93), Expect = 4e-045
Identities = 396/497 (79%)
Strand = Plus / Plus
Query: 307 tggggcatcgacataccaccagatacaacaatttcgatgccttcacgcacagaaagattt 366
|||||||| ||||| || ||||| ||||| |||||||| ||||| || || || |||||
Sbjct: 362 tggggcattgacatccccccagagacaacgatttcgattccttctcggactgagagattg 421
Query: 367 ggccttatgacatcctttgaattcaccatgaagatatcaccaatgtaaagatggttcgtt 426
|| || || ||||| || | | | |||| ||| |||||||||||||| ||||| || ||
Sbjct: 422 ggtctgataacatctttggtagtaaccaggaatatatcaccaatgtacagatgatttgtg 481
Query: 427 gggacatagacgcagtaaagatcttcttgaccagaataactctggagggatactgacgat 486
|| |||||||| ||| | || ||||||| ||||| || ||||||||| || | ||
Sbjct: 482 ggaacatagacacagcatagctcttcttctccagagtagttctggagggtcacagttgaa 541
Query: 487 gtgatgaaaccaaacgcatattctccaacacgaggatgccttatgatgaccacttccttg 546
|| ||||| ||||| ||||| || |||| ||| ||||| ||||||||| |||||||||||
Sbjct: 542 gtaatgaacccaaaagcatactcgccaatacgtggatgtcttatgatggccacttccttg 601
Query: 547 aacgcctgtttgttctgatctggtgatattgcagcactaatttgcttcgatgcattgtag 606
|| ||||| |||| || ||||| ||||| ||||||||||||||||| || || |||||
Sbjct: 602 aaagcctgagtgttttggtctggggatatggcagcactaatttgcttggaagcgttgtaa 661
Query: 607 atatgacgaacaagaggcatgcgcttaataatccactcgccaaggctaaggacagatgcc 666
||||| ||||||| ||||| | || |||| |||||| |||||||| ||||| |||||
Sbjct: 662 atatggcgaacaaatggcatccttttgataaaccactctccaaggctcaggacggatgct 721
Query: 667 ccaagccaagatgacataaagactccgatcaaaaatatgaaagtaacagatgtgacaaag 726
|| | |||||||||||| || || || | ||| || ||||| || | || || | |||
Sbjct: 722 cccaaccaagatgacatgaataccccaaccaagaaaatgaatgttagggaggttataaat 781
Query: 727 ccaagaccgaatatgttgattcccagttgagcatagattggagagaagaatccatcaaca 786
|||||||| || || | ||||| ||||| ||||| |||||||||||||||||||| |||
Sbjct: 782 ccaagaccaaagatatcaattccaagttgggcataaattggagagaagaatccatccaca 841
Query: 787 aaatgaatgaaccacca 803
|| ||||| ||||||||
Sbjct: 842 aagtgaataaaccacca 858
>gb|BU891061.1|BU891061 P045D09 Populus petioles cDNA library Populus tremula cDNA 5 prime,
mRNA sequence
Length = 524
Score = 167 bits (84), Expect = 9e-040
Identities = 252/308 (81%)
Strand = Plus / Minus
Query: 565 tctggtgatattgcagcactaatttgcttcgatgcattgtagatatgacgaacaagaggc 624
||||||||||| ||||||||||||||||| || ||||| || ||||||||||||| |||
Sbjct: 511 tctggtgatatggcagcactaatttgcttggaggcattataaatatgacgaacaaatggc 452
Query: 625 atgcgcttaataatccactcgccaaggctaaggacagatgccccaagccaagatgacata 684
|| || || |||| |||||| |||||||| |||||||| || || | ||||||||||||
Sbjct: 451 atccgtttgataaaccactccccaaggctcaggacagaagctcccaaccaagatgacatg 392
Query: 685 aagactccgatcaaaaatatgaaagtaacagatgtgacaaagccaagaccgaatatgttg 744
|| || || | ||| || ||||| || | || || | ||| |||||||| || || |
Sbjct: 391 aataccccaaccaagaaaatgaatgttatggaggttataaatccaagaccaaagatatca 332
Query: 745 attcccagttgagcatagattggagagaagaatccatcaacaaaatgaatgaaccaccag 804
||||| || || |||||||||||||||||||||||||| ||||| |||| ||||||||
Sbjct: 331 attccaagatgggcatagattggagagaagaatccatccacaaagtgaacaaaccaccat 272
Query: 805 gtgatgtagaacgttattgctatggggaagagaattacacatccagtcatgaacttcttt 864
|| |||||||| || ||||| ||||| || || || |||||||| |||||||| || |||
Sbjct: 271 gttatgtagaaagtgattgcaatgggaaatagtatgacacatcctgtcatgaattttttt 212
Query: 865 gaagccca 872
||||||||
Sbjct: 211 gaagccca 204
>gb|DT513443.1|DT513443 WS02422.B21_B02 PTxD-ICC-N-A-14 Populus trichocarpa x Populus
deltoides cDNA clone WS02422_B02 3', mRNA sequence
Length = 817
Score = 153 bits (77), Expect = 1e-035
Identities = 302/377 (80%)
Strand = Plus / Plus
Query: 307 tggggcatcgacataccaccagatacaacaatttcgatgccttcacgcacagaaagattt 366
|||||||||||||| || ||||| ||||| |||||||| ||||| || || || |||||
Sbjct: 363 tggggcatcgacatccccccagagacaacgatttcgattccttctcggactgagagattg 422
Query: 367 ggccttatgacatcctttgaattcaccatgaagatatcaccaatgtaaagatggttcgtt 426
|| || || ||||| || | | | |||| ||| |||||||||||||| ||||| || ||
Sbjct: 423 ggtctgataacatctttggtagtaaccaggaatatatcaccaatgtacagatgatttgtg 482
Query: 427 gggacatagacgcagtaaagatcttcttgaccagaataactctggagggatactgacgat 486
|| |||||||| ||| | || ||||||| ||||| || ||||||||| || | ||
Sbjct: 483 ggaacatagacacagcatagctcttcttctccagagtagttctggagggtcacagttgaa 542
Query: 487 gtgatgaaaccaaacgcatattctccaacacgaggatgccttatgatgaccacttccttg 546
|| ||||| ||||| ||||| || |||| ||| ||||| ||||||||| |||||||||||
Sbjct: 543 gtaatgaacccaaaagcatactcgccaatacgtggatgtcttatgatggccacttccttg 602
Query: 547 aacgcctgtttgttctgatctggtgatattgcagcactaatttgcttcgatgcattgtag 606
|| ||||| |||| || ||||| ||||| ||||||||||||||||| || || || ||
Sbjct: 603 aaagcctgagtgttttggtctggggatatggcagcactaatttgcttggaagcgttataa 662
Query: 607 atatgacgaacaagaggcatgcgcttaataatccactcgccaaggctaaggacagatgcc 666
||||| ||||||| ||||| | || |||| |||||| |||||||| ||||| |||||
Sbjct: 663 atatggcgaacaaatggcatccttttgataaaccactctccaaggctcaggacggatgct 722
Query: 667 ccaagccaagatgacat 683
|| | ||||||||||||
Sbjct: 723 cccaaccaagatgacat 739
>gb|BU826676.1|BU826676 UK123TD11 Populus apical shoot cDNA library Populus tremula x
Populus tremuloides cDNA 5 prime, mRNA sequence
Length = 561
Score = 103 bits (52), Expect = 1e-020
Identities = 100/116 (86%)
Strand = Plus / Minus
Query: 757 gcatagattggagagaagaatccatcaacaaaatgaatgaaccaccaggtgatgtagaac 816
|||||||||||||||||||||||||| ||||| |||| |||||||| || ||||||||
Sbjct: 445 gcatagattggagagaagaatccatccacaaagtgaacaaaccaccatgttatgtagaaa 386
Query: 817 gttattgctatggggaagagaattacacatccagtcatgaacttctttgaagccca 872
|| ||||| ||||| || || || |||||||| |||||||| || |||||||||||
Sbjct: 385 gtgattgcaatgggaaatagtatgacacatcctgtcatgaatttttttgaagccca 330
>gb|BU871757.1|BU871757 Q034B05 Populus flower cDNA library Populus trichocarpa cDNA 5
prime, mRNA sequence
Length = 586
Score = 103 bits (52), Expect = 1e-020
Identities = 127/152 (83%)
Strand = Plus / Minus
Query: 721 acaaagccaagaccgaatatgttgattcccagttgagcatagattggagagaagaatcca 780
||||| |||||||| ||||| |||| ||| | |||||||||||||||||||||||||||
Sbjct: 430 acaaatccaagaccaaatatattgactccaaaatgagcatagattggagagaagaatcca 371
Query: 781 tcaacaaaatgaatgaaccaccaggtgatgtagaacgttattgctatggggaagagaatt 840
|| |||||| ||| |||||||| |||||| |||| || || || || || | | |||
Sbjct: 370 tccacaaaactaataaaccaccaagtgatgcagaatgtgatggccataggaagcaaaatg 311
Query: 841 acacatccagtcatgaacttctttgaagccca 872
|||||||||| |||||||||||| ||||||||
Sbjct: 310 acacatccagacatgaacttcttcgaagccca 279
>gb|BU873174.1|BU873174 Q052A08 Populus flower cDNA library Populus trichocarpa cDNA 5
prime, mRNA sequence
Length = 568
Score = 103 bits (52), Expect = 1e-020
Identities = 127/152 (83%)
Strand = Plus / Minus
Query: 721 acaaagccaagaccgaatatgttgattcccagttgagcatagattggagagaagaatcca 780
||||| |||||||| ||||| |||| ||| | |||||||||||||||||||||||||||
Sbjct: 352 acaaatccaagaccaaatatattgactccaaaatgagcatagattggagagaagaatcca 293
Query: 781 tcaacaaaatgaatgaaccaccaggtgatgtagaacgttattgctatggggaagagaatt 840
|| |||||| ||| |||||||| |||||| |||| || || || || || | | |||
Sbjct: 292 tccacaaaactaataaaccaccaagtgatgcagaatgtgatggccataggaagcaaaatg 233
Query: 841 acacatccagtcatgaacttctttgaagccca 872
|||||||||| |||||||||||| ||||||||
Sbjct: 232 acacatccagacatgaacttcttcgaagccca 201
Score = 50.1 bits (25), Expect = 2e-004
Identities = 28/29 (96%)
Strand = Plus / Minus
Query: 520 ggatgccttatgatgaccacttccttgaa 548
||||||||||||||| |||||||||||||
Sbjct: 553 ggatgccttatgatggccacttccttgaa 525
>gb|BU889261.1|BU889261 P018F09 Populus petioles cDNA library Populus tremula cDNA 5 prime,
mRNA sequence
Length = 553
Score = 103 bits (52), Expect = 1e-020
Identities = 100/116 (86%)
Strand = Plus / Minus
Query: 757 gcatagattggagagaagaatccatcaacaaaatgaatgaaccaccaggtgatgtagaac 816
|||||||||||||||||||||||||| ||||| |||| |||||||| || ||||||||
Sbjct: 437 gcatagattggagagaagaatccatccacaaagtgaacaaaccaccatgttatgtagaaa 378
Query: 817 gttattgctatggggaagagaattacacatccagtcatgaacttctttgaagccca 872
|| ||||| ||||| || || || |||||||| |||||||| || |||||||||||
Sbjct: 377 gtgattgcaatgggaaatagtatgacacatcctgtcatgaatttttttgaagccca 322
>gb|BU870532.1|BU870532 Q013G04 Populus flower cDNA library Populus trichocarpa cDNA 5
prime, mRNA sequence
Length = 346
Score = 87.7 bits (44), Expect = 7e-016
Identities = 99/116 (85%), Gaps = 1/116 (0%)
Strand = Plus / Minus
Query: 757 gcatagattggagagaagaatccatcaacaaaatgaatgaaccaccaggtgatgtagaac 816
||||||||||||| |||||||||||| ||||| |||| |||||||| || ||||||||
Sbjct: 299 gcatagattggag-gaagaatccatccacaaagtgaacaaaccaccatgttatgtagaaa 241
Query: 817 gttattgctatggggaagagaattacacatccagtcatgaacttctttgaagccca 872
|| ||||| ||||| || || || |||||||| |||||||| || |||||||||||
Sbjct: 240 gtgattgcaatgggaaatagtatgacacatcctgtcatgaatttttttgaagccca 185
>gb|DT470091.1|DT470091 WS01919.C21_N14 PT-DX-N-A-10 Populus trichocarpa cDNA clone
WS01919_N14 3', mRNA sequence
Length = 624
Score = 87.7 bits (44), Expect = 7e-016
Identities = 197/248 (79%)
Strand = Plus / Plus
Query: 307 tggggcatcgacataccaccagatacaacaatttcgatgccttcacgcacagaaagattt 366
|||||||||||||| || ||||| ||||| |||||||| ||||| || || || |||||
Sbjct: 368 tggggcatcgacatccccccagagacaactatttcgattccttctcggactgagagattg 427
Query: 367 ggccttatgacatcctttgaattcaccatgaagatatcaccaatgtaaagatggttcgtt 426
|| || || ||||| || | | | |||| ||| |||||||||||||| ||||| || ||
Sbjct: 428 ggtctgataacatctttggtagtaaccaggaatatatcaccaatgtacagatgatttgtg 487
Query: 427 gggacatagacgcagtaaagatcttcttgaccagaataactctggagggatactgacgat 486
|| |||||||| ||| | || ||||||| ||||| || ||||||||| || | ||
Sbjct: 488 ggaacatagacacagcatagctcttcttctccagagtagttctggagggtcacagttgaa 547
Query: 487 gtgatgaaaccaaacgcatattctccaacacgaggatgccttatgatgaccacttccttg 546
|| ||||| ||||| ||||| || |||| || ||||| ||||||||| |||||||||||
Sbjct: 548 gtaatgaacccaaaagcatactcgccaatccgtggatgtcttatgatggccacttccttg 607
Query: 547 aacgcctg 554
|| |||||
Sbjct: 608 aaagcctg 615
>gb|BU897504.1|BU897504 X058H02 Populus wood cDNA library Populus tremula x Populus
tremuloides cDNA 5 prime, mRNA sequence
Length = 556
Score = 85.7 bits (43), Expect = 3e-015
Identities = 122/147 (82%), Gaps = 1/147 (0%)
Strand = Plus / Minus
Query: 727 ccaagaccgaatatgttgattcccagttgagcatagattggagagaagaatccatcaaca 786
|||||||| || |||| ||||| || || ||||||||||||| |||||||||||| |||
Sbjct: 537 ccaagaccaaagatgtcaattccaagatgggcatagattggagggaagaatccatccaca 478
Query: 787 aaatgaatgaa-ccaccaggtgatgtagaacgttattgctatggggaagagaattacaca 845
|| |||| || |||||| || |||||||| || ||||| ||||| || || || |||||
Sbjct: 477 aagtgaacaaacccaccatgttatgtagaaagtgattgcaatgggaaatagtatgacaca 418
Query: 846 tccagtcatgaacttctttgaagccca 872
||| |||||||| || |||||||||||
Sbjct: 417 tcctgtcatgaatttttttgaagccca 391
>gb|DT500890.1|DT500890 PX0019.BR_L02 PT-X-FL-A-1 Populus trichocarpa cDNA clone PX0019_L02
5', mRNA sequence
Length = 624
Score = 65.9 bits (33), Expect = 3e-009
Identities = 39/41 (95%)
Strand = Plus / Minus
Query: 484 gatgtgatgaaaccaaacgcatattctccaacacgaggatg 524
||||||||||||||||| ||||||||||| |||||||||||
Sbjct: 568 gatgtgatgaaaccaaaagcatattctcctacacgaggatg 528
Score = 50.1 bits (25), Expect = 2e-004
Identities = 37/41 (90%)
Strand = Plus / Minus
Query: 823 gctatggggaagagaattacacatccagtcatgaacttctt 863
||||||||||| || | |||||||||||| |||||||||||
Sbjct: 229 gctatggggaaaagtactacacatccagtaatgaacttctt 189
Score = 48.1 bits (24), Expect = 6e-004
Identities = 30/32 (93%)
Strand = Plus / Minus
Query: 559 ttctgatctggtgatattgcagcactaatttg 590
||||||||||| || |||||||||||||||||
Sbjct: 493 ttctgatctggagaaattgcagcactaatttg 462
>gb|BU829781.1|BU829781 K067P31P Populus apical shoot cDNA library Populus tremula x
Populus tremuloides cDNA 5 prime, mRNA sequence
Length = 535
Score = 58.0 bits (29), Expect = 6e-007
Identities = 38/41 (92%)
Strand = Plus / Minus
Query: 484 gatgtgatgaaaccaaacgcatattctccaacacgaggatg 524
||||||||||||||||| |||||||| || |||||||||||
Sbjct: 437 gatgtgatgaaaccaaaagcatattcacctacacgaggatg 397
Score = 48.1 bits (24), Expect = 6e-004
Identities = 30/32 (93%)
Strand = Plus / Minus
Query: 559 ttctgatctggtgatattgcagcactaatttg 590
||||||||||| || |||||||||||||||||
Sbjct: 362 ttctgatctggagaaattgcagcactaatttg 331
Score = 44.1 bits (22), Expect = 0.009
Identities = 37/42 (88%)
Strand = Plus / Minus
Query: 387 attcaccatgaagatatcaccaatgtaaagatggttcgttgg 428
|||||||| ||| ||||||||||| || |||||||| |||||
Sbjct: 535 attcaccaggaatatatcaccaatatatagatggtttgttgg 494
>gb|CN520269.1|CN520269 GQ0107.B3_N05 GQ010 Populus trichocarpa x Populus deltoides cDNA
clone GQ0107_N05 5', mRNA sequence
Length = 772
Score = 58.0 bits (29), Expect = 6e-007
Identities = 38/41 (92%)
Strand = Plus / Minus
Query: 484 gatgtgatgaaaccaaacgcatattctccaacacgaggatg 524
||||||||||||||||| |||||||| || |||||||||||
Sbjct: 565 gatgtgatgaaaccaaaagcatattcacctacacgaggatg 525
Score = 52.0 bits (26), Expect = 4e-005
Identities = 53/62 (85%)
Strand = Plus / Minus
Query: 361 agatttggccttatgacatcctttgaattcaccatgaagatatcaccaatgtaaagatgg 420
|||||||| ||||| | ||||| |||||||||| ||| ||||||||||| || ||||||
Sbjct: 688 agatttggtcttataatgtccttggaattcaccaggaatatatcaccaatatatagatgg 629
Query: 421 tt 422
||
Sbjct: 628 tt 627
Score = 50.1 bits (25), Expect = 2e-004
Identities = 37/41 (90%)
Strand = Plus / Minus
Query: 823 gctatggggaagagaattacacatccagtcatgaacttctt 863
||||||||||| || | |||||||||||| |||||||||||
Sbjct: 226 gctatggggaaaagtactacacatccagtaatgaacttctt 186
Score = 48.1 bits (24), Expect = 6e-004
Identities = 30/32 (93%)
Strand = Plus / Minus
Query: 559 ttctgatctggtgatattgcagcactaatttg 590
||||||||||| || |||||||||||||||||
Sbjct: 490 ttctgatctggagaaattgcagcactaatttg 459
>gb|CV235386.1|CV235386 WS01218.B21_O19 PT-GT-FL-A-3 Populus trichocarpa cDNA clone
WS01218_O19 3', mRNA sequence
Length = 722
Score = 58.0 bits (29), Expect = 6e-007
Identities = 56/65 (86%)
Strand = Plus / Plus
Query: 484 gatgtgatgaaaccaaacgcatattctccaacacgaggatgccttatgatgaccacttcc 543
|||||||| || || || |||||||| ||| ||| ||||||||||||||| ||||||||
Sbjct: 573 gatgtgataaatccgaaagcatattccccatgacgtggatgccttatgatggccacttcc 632
Query: 544 ttgaa 548
|||||
Sbjct: 633 ttgaa 637
>gb|CV252774.1|CV252774 PX0015.B21_O23 PT-X-FL-A-1 Populus trichocarpa cDNA clone
PX0015_O23 3', mRNA sequence
Length = 638
Score = 58.0 bits (29), Expect = 6e-007
Identities = 65/77 (84%)
Strand = Plus / Plus
Query: 363 atttggccttatgacatcctttgaattcaccatgaagatatcaccaatgtaaagatggtt 422
|||||| ||||||| |||| |||||| |||| || | |||||||||||| ||||||||
Sbjct: 498 atttggtcttatgatctcctctgaattgaccagaaatacatcaccaatgtacagatggtt 557
Query: 423 cgttgggacatagacgc 439
||||||||||| ||||
Sbjct: 558 ggttgggacataaacgc 574
>gb|CV252969.1|CV252969 PX0019.B21.1_L02 PT-X-FL-A-1 Populus trichocarpa cDNA clone
PX0019_L02 3', mRNA sequence
Length = 715
Score = 58.0 bits (29), Expect = 6e-007
Identities = 38/41 (92%)
Strand = Plus / Plus
Query: 484 gatgtgatgaaaccaaacgcatattctccaacacgaggatg 524
||||||||||||||||| |||||||| || |||||||||||
Sbjct: 546 gatgtgatgaaaccaaaagcatattcacctacacgaggatg 586
Score = 52.0 bits (26), Expect = 4e-005
Identities = 53/62 (85%)
Strand = Plus / Plus
Query: 361 agatttggccttatgacatcctttgaattcaccatgaagatatcaccaatgtaaagatgg 420
|||||||| ||||| | ||||| |||||||||| ||| ||||||||||| || ||||||
Sbjct: 423 agatttggtcttataatgtccttggaattcaccaggaatatatcaccaatatatagatgg 482
Query: 421 tt 422
||
Sbjct: 483 tt 484
Score = 48.1 bits (24), Expect = 6e-004
Identities = 30/32 (93%)
Strand = Plus / Plus
Query: 559 ttctgatctggtgatattgcagcactaatttg 590
||||||||||| || |||||||||||||||||
Sbjct: 621 ttctgatctggagaaattgcagcactaatttg 652
>gb|CV269592.1|CV269592 WS0208.B21_K22 PTxN-IB-N-A-11 Populus trichocarpa x Populus nigra
cDNA clone WS0208_K22 3', mRNA sequence
Length = 745
Score = 58.0 bits (29), Expect = 6e-007
Identities = 38/41 (92%)
Strand = Plus / Plus
Query: 484 gatgtgatgaaaccaaacgcatattctccaacacgaggatg 524
||||||||||||||||| |||||||| || |||||||||||
Sbjct: 546 gatgtgatgaaaccaaaagcatattcacctacacgaggatg 586
Score = 52.0 bits (26), Expect = 4e-005
Identities = 53/62 (85%)
Strand = Plus / Plus
Query: 361 agatttggccttatgacatcctttgaattcaccatgaagatatcaccaatgtaaagatgg 420
|||||||| ||||| | ||||| |||||||||| ||| ||||||||||| || ||||||
Sbjct: 423 agatttggtcttataatgtccttggaattcaccaggaatatatcaccaatatatagatgg 482
Query: 421 tt 422
||
Sbjct: 483 tt 484
Score = 48.1 bits (24), Expect = 6e-004
Identities = 30/32 (93%)
Strand = Plus / Plus
Query: 559 ttctgatctggtgatattgcagcactaatttg 590
||||||||||| || |||||||||||||||||
Sbjct: 621 ttctgatctggagaaattgcagcactaatttg 652
>gb|CV275864.1|CV275864 WS0177.B21_O02 PTxD-NR-A-8 Populus trichocarpa x Populus deltoides
cDNA clone WS0177_O02 3', mRNA sequence
Length = 816
Score = 58.0 bits (29), Expect = 6e-007
Identities = 65/77 (84%)
Strand = Plus / Plus
Query: 363 atttggccttatgacatcctttgaattcaccatgaagatatcaccaatgtaaagatggtt 422
|||||| ||||||| |||| |||||| |||| || | |||||||||||| ||||||||
Sbjct: 531 atttggtcttatgatctcctctgaattgaccagaaatacatcaccaatgtacagatggtt 590
Query: 423 cgttgggacatagacgc 439
||||||||||| ||||
Sbjct: 591 ggttgggacataaacgc 607
Score = 44.1 bits (22), Expect = 0.009
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 484 gatgtgatgaaaccaaacgcatattc 509
||||||||||||||||| ||||||||
Sbjct: 652 gatgtgatgaaaccaaatgcatattc 677
>gb|DN488101.1|DN488101 R032D11.3pR Populus root cDNA library Populus tremula x Populus
tremuloides cDNA clone V017D11 3', mRNA sequence
Length = 765
Score = 58.0 bits (29), Expect = 6e-007
Identities = 38/41 (92%)
Strand = Plus / Plus
Query: 484 gatgtgatgaaaccaaacgcatattctccaacacgaggatg 524
||||||||||||||||| |||||||| || |||||||||||
Sbjct: 515 gatgtgatgaaaccaaaagcatattcacctacacgaggatg 555
Score = 56.0 bits (28), Expect = 2e-006
Identities = 58/68 (85%)
Strand = Plus / Plus
Query: 361 agatttggccttatgacatcctttgaattcaccatgaagatatcaccaatgtaaagatgg 420
|||||||| ||||| | ||||| |||||||||| ||| ||||||||||| || ||||||
Sbjct: 392 agatttggtcttataatgtccttggaattcaccaggaatatatcaccaatatatagatgg 451
Query: 421 ttcgttgg 428
|| |||||
Sbjct: 452 tttgttgg 459
Score = 48.1 bits (24), Expect = 6e-004
Identities = 30/32 (93%)
Strand = Plus / Plus
Query: 559 ttctgatctggtgatattgcagcactaatttg 590
||||||||||| || |||||||||||||||||
Sbjct: 590 ttctgatctggagaaattgcagcactaatttg 621
>gb|DN490693.1|DN490693 UL76PH09.3pR Populus cold stressed leaves cDNA library Populus
tremula x Populus tremuloides cDNA clone UL76PH09 3',
mRNA sequence
Length = 715
Score = 58.0 bits (29), Expect = 6e-007
Identities = 65/77 (84%)
Strand = Plus / Plus
Query: 363 atttggccttatgacatcctttgaattcaccatgaagatatcaccaatgtaaagatggtt 422
|||||| ||||||| |||| |||||| |||| || | |||||||||||| ||||||||
Sbjct: 401 atttggtcttatgatctcctctgaattgaccagaaatacatcaccaatgtacagatggtt 460
Query: 423 cgttgggacatagacgc 439
||||||||||| ||||
Sbjct: 461 ggttgggacataaacgc 477
Score = 44.1 bits (22), Expect = 0.009
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 484 gatgtgatgaaaccaaacgcatattc 509
||||||||||||||||| ||||||||
Sbjct: 522 gatgtgatgaaaccaaatgcatattc 547
>gb|DT491616.1|DT491616 WS02548.C21_E07 PT-MB-N-A-15 Populus trichocarpa cDNA clone
WS02548_E07 3', mRNA sequence
Length = 834
Score = 58.0 bits (29), Expect = 6e-007
Identities = 56/65 (86%)
Strand = Plus / Plus
Query: 484 gatgtgatgaaaccaaacgcatattctccaacacgaggatgccttatgatgaccacttcc 543
|||||||| || || || |||||||| ||| ||| ||||||||||||||| ||||||||
Sbjct: 569 gatgtgataaatccgaaagcatattccccatgacgtggatgccttatgatggccacttcc 628
Query: 544 ttgaa 548
|||||
Sbjct: 629 ttgaa 633
>gb|DT520719.1|DT520719 WS02448.B21_F15 PTxD-ICC-N-A-14 Populus trichocarpa x Populus
deltoides cDNA clone WS02448_F15 3', mRNA sequence
Length = 874
Score = 58.0 bits (29), Expect = 6e-007
Identities = 56/65 (86%)
Strand = Plus / Plus
Query: 484 gatgtgatgaaaccaaacgcatattctccaacacgaggatgccttatgatgaccacttcc 543
|||||||| || || || |||||||| ||| ||| ||||||||||||||| ||||||||
Sbjct: 603 gatgtgataaatccgaaagcatattccccatgacgtggatgccttatgatggccacttcc 662
Query: 544 ttgaa 548
|||||
Sbjct: 663 ttgaa 667
>gb|CX186076.1|CX186076 E12_45-26_10.ab1 leaf inoculated with Marssonia pathogen of Populus
euramericana Populus x canadensis cDNA, mRNA sequence
Length = 603
Score = 54.0 bits (27), Expect = 1e-005
Identities = 33/35 (94%)
Strand = Plus / Minus
Query: 841 acacatccagtcatgaacttctttgaagcccaact 875
||||||||||||||||||||||| || ||||||||
Sbjct: 240 acacatccagtcatgaacttcttagaggcccaact 206
Score = 44.1 bits (22), Expect = 0.009
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 484 gatgtgatgaaaccaaacgcatattc 509
||||||||||||||||| ||||||||
Sbjct: 597 gatgtgatgaaaccaaatgcatattc 572
Score = 44.1 bits (22), Expect = 0.009
Identities = 70/86 (81%)
Strand = Plus / Minus
Query: 718 gtgacaaagccaagaccgaatatgttgattcccagttgagcatagattggagagaagaat 777
|||||||| ||||||||||| |||| || || || || || || || ||| ||||||
Sbjct: 363 gtgacaaacccaagaccgaaaatgtcaatgccgagatgggcgtaaatcggactgaagaag 304
Query: 778 ccatcaacaaaatgaatgaaccacca 803
||||||||||| ||||| ||||||||
Sbjct: 303 ccatcaacaaactgaataaaccacca 278
>gb|BP933938.1|BP933938 BP933938 full-length enriched poplar cDNA library Populus nigra
cDNA clone PnFL1-058_G12.r 3', mRNA sequence
Length = 568
Score = 52.0 bits (26), Expect = 4e-005
Identities = 53/62 (85%)
Strand = Plus / Plus
Query: 361 agatttggccttatgacatcctttgaattcaccatgaagatatcaccaatgtaaagatgg 420
|||||||| ||||| | ||||| |||||||||| ||| ||||||||||| || ||||||
Sbjct: 462 agatttggtcttataatgtccttggaattcaccaggaatatatcaccaatatatagatgg 521
Query: 421 tt 422
||
Sbjct: 522 tt 523
>gb|BU813633.1|BU813633 N012H12 Populus bark cDNA library Populus tremula x Populus
tremuloides cDNA 5 prime, mRNA sequence
Length = 359
Score = 50.1 bits (25), Expect = 2e-004
Identities = 55/65 (84%)
Strand = Plus / Minus
Query: 808 atgtagaacgttattgctatggggaagagaattacacatccagtcatgaacttctttgaa 867
|||||||| || ||||| ||||| || || || |||||||| |||||||| || ||||||
Sbjct: 355 atgtagaaagtgattgcaatgggaaatagtatgacacatcctgtcatgaatttttttgaa 296
Query: 868 gccca 872
|||||
Sbjct: 295 gccca 291
>gb|BP926366.1|BP926366 BP926366 full-length enriched poplar cDNA library Populus nigra
cDNA clone PnFL1-058_G12.f 5', mRNA sequence
Length = 468
Score = 50.1 bits (25), Expect = 2e-004
Identities = 37/41 (90%)
Strand = Plus / Minus
Query: 823 gctatggggaagagaattacacatccagtcatgaacttctt 863
||||||||||| || | |||||||||||| |||||||||||
Sbjct: 311 gctatggggaaaagtactacacatccagtaatgaacttctt 271
>gb|BU810845.1|BU810845 UL76PH09 Populus leaf cDNA library Populus tremula x Populus
tremuloides cDNA 5 prime, mRNA sequence
Length = 462
Score = 48.1 bits (24), Expect = 6e-004
Identities = 30/32 (93%)
Strand = Plus / Minus
Query: 844 catccagtcatgaacttctttgaagcccaact 875
|||||||||||||||||||| || ||||||||
Sbjct: 249 catccagtcatgaacttcttagaggcccaact 218
Score = 44.1 bits (22), Expect = 0.009
Identities = 70/86 (81%)
Strand = Plus / Minus
Query: 718 gtgacaaagccaagaccgaatatgttgattcccagttgagcatagattggagagaagaat 777
|||||| | |||||||||||||||| || || || || || || || ||| ||||||
Sbjct: 454 gtgacatacccaagaccgaatatgtcaatgccgagatgggcgtaaatcggactgaagaag 395
Query: 778 ccatcaacaaaatgaatgaaccacca 803
||||||||||| ||||| ||||||||
Sbjct: 394 ccatcaacaaactgaataaaccacca 369
>gb|DN500684.1|DN500684 UL76PH09.5pR Populus cold stressed leaves cDNA library Populus
tremula x Populus tremuloides cDNA clone UL76PH09 5',
mRNA sequence
Length = 960
Score = 48.1 bits (24), Expect = 6e-004
Identities = 30/32 (93%)
Strand = Plus / Minus
Query: 844 catccagtcatgaacttctttgaagcccaact 875
|||||||||||||||||||| || ||||||||
Sbjct: 225 catccagtcatgaacttcttagaggcccaact 194
>gb|DT500586.1|DT500586 PX0015.BR_O23 PT-X-FL-A-1 Populus trichocarpa cDNA clone PX0015_O23
5', mRNA sequence
Length = 414
Score = 48.1 bits (24), Expect = 6e-004
Identities = 30/32 (93%)
Strand = Plus / Minus
Query: 841 acacatccagtcatgaacttctttgaagccca 872
||||||||||||||||||||||| || |||||
Sbjct: 205 acacatccagtcatgaacttcttagaggccca 174
>gb|AF185574.2| Populus tremuloides transcription factor MAGL4 mRNA, complete cds
Length = 1195
Score = 42.1 bits (21), Expect = 0.037
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 903 gtcgacgcggccgcgaattcc 923
|||||||||||||||||||||
Sbjct: 123 gtcgacgcggccgcgaattcc 103
Database: Populus_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:49 PM
Number of letters in database: 203,408,664
Number of sequences in database: 369,679
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 111,857
Number of Sequences: 369679
Number of extensions: 111857
Number of successful extensions: 29294
Number of sequences better than 0.5: 36
Number of HSP's better than 0.5 without gapping: 36
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 29187
Number of HSP's gapped (non-prelim): 91
length of query: 924
length of database: 203,408,664
effective HSP length: 19
effective length of query: 905
effective length of database: 196,384,763
effective search space: 177728210515
effective search space used: 177728210515
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)