BLASTN 2.2.10 [Oct-19-2004]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 3064721.2.2
         (595 letters)

Database: Populus_nucl_with_EST.fasta 
           369,679 sequences; 203,408,664 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|CV231822.1|CV231822  WS0195.B21_K18 PT-DX-N-A-10 Populus ...    46   0.002
gb|BU881696.1|BU881696  UM66TC09 Populus flower cDNA library...    42   0.024

>gb|CV231822.1|CV231822 WS0195.B21_K18 PT-DX-N-A-10 Populus trichocarpa cDNA clone
           WS0195_K18 3', mRNA sequence
          Length = 740

 Score = 46.1 bits (23), Expect = 0.002
 Identities = 38/43 (88%)
 Strand = Plus / Minus

                                                      
Query: 32  gcaaaacatcactgaggtctaccatacctggcagaagttgaat 74
           ||||||||||||||| || || ||||| ||||||||| |||||
Sbjct: 694 gcaaaacatcactgatgtatatcatacatggcagaagctgaat 652



>gb|BU881696.1|BU881696 UM66TC09 Populus flower cDNA library Populus trichocarpa cDNA 5
           prime, mRNA sequence
          Length = 593

 Score = 42.1 bits (21), Expect = 0.024
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 377 cttttcttttcaatgatttct 397
           |||||||||||||||||||||
Sbjct: 123 cttttcttttcaatgatttct 143



  Database: Populus_nucl_with_EST.fasta
    Posted date:  Feb 7, 2006  2:49 PM
  Number of letters in database: 203,408,664
  Number of sequences in database:  369,679
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 66,662
Number of Sequences: 369679
Number of extensions: 66662
Number of successful extensions: 18472
Number of sequences better than  0.5: 2
Number of HSP's better than  0.5 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 18470
Number of HSP's gapped (non-prelim): 2
length of query: 595
length of database: 203,408,664
effective HSP length: 19
effective length of query: 576
effective length of database: 196,384,763
effective search space: 113117623488
effective search space used: 113117623488
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)