BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 3062418.2.1
(851 letters)
Database: Populus_nucl_with_EST.fasta
369,679 sequences; 203,408,664 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CX654585.1|CX654585 PO02016G03 Poplar SC cDNA library Po... 56 2e-006
gb|CX174034.1|CX174034 A08_69-64_02.ab1 leaf inoculated wit... 48 6e-004
gb|CK097994.1|CK097994 A001P37.5pR Hybrid aspen plasmid lib... 46 0.002
>gb|CX654585.1|CX654585 PO02016G03 Poplar SC cDNA library Populus alba x Populus tremula
var. glandulosa cDNA clone PO02016G03 5', mRNA sequence
Length = 476
Score = 56.0 bits (28), Expect = 2e-006
Identities = 34/36 (94%)
Strand = Plus / Plus
Query: 26 gctcaaagagcaagggatttccatgttggttggttt 61
|||||||||||||| |||||||||||||| ||||||
Sbjct: 398 gctcaaagagcaagagatttccatgttggatggttt 433
>gb|CX174034.1|CX174034 A08_69-64_02.ab1 leaf inoculated with Marssonia pathogen of Populus
deltoides Populus deltoides cDNA, mRNA sequence
Length = 643
Score = 48.1 bits (24), Expect = 6e-004
Identities = 33/36 (91%)
Strand = Plus / Plus
Query: 26 gctcaaagagcaagggatttccatgttggttggttt 61
|||||||||||||| ||||| |||||||| ||||||
Sbjct: 98 gctcaaagagcaagagattttcatgttggatggttt 133
>gb|CK097994.1|CK097994 A001P37.5pR Hybrid aspen plasmid library Populus tremula x Populus
tremuloides cDNA clone A001P37 5', mRNA sequence
Length = 528
Score = 46.1 bits (23), Expect = 0.002
Identities = 32/35 (91%)
Strand = Plus / Plus
Query: 26 gctcaaagagcaagggatttccatgttggttggtt 60
|||||||||||||| ||||| |||||||| |||||
Sbjct: 106 gctcaaagagcaagagattttcatgttggatggtt 140
Database: Populus_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:49 PM
Number of letters in database: 203,408,664
Number of sequences in database: 369,679
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 78,300
Number of Sequences: 369679
Number of extensions: 78300
Number of successful extensions: 20255
Number of sequences better than 0.5: 3
Number of HSP's better than 0.5 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 20252
Number of HSP's gapped (non-prelim): 3
length of query: 851
length of database: 203,408,664
effective HSP length: 19
effective length of query: 832
effective length of database: 196,384,763
effective search space: 163392122816
effective search space used: 163392122816
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)