BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 3054736.2.1
(725 letters)
Database: Populus_nucl_with_EST.fasta
369,679 sequences; 203,408,664 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CK096470.1|CK096470 UB15CPF09.3pR Populus active cambium... 48 5e-004
gb|CV255308.1|CV255308 WS02412.B21_K12 PTxD-ICC-N-A-14 Popu... 48 5e-004
gb|CX655011.1|CX655011 PO01003G06 Poplar SC cDNA library Po... 48 5e-004
gb|CX655147.1|CX655147 PO02030E06 Poplar SC cDNA library Po... 48 5e-004
gb|DT517578.1|DT517578 WS02434.B21_L09 PTxD-ICC-N-A-14 Popu... 48 5e-004
gb|CA933430.1|CA933430 MTU5CS.P7.H12 Aspen stem cDNA Librar... 44 0.007
gb|CK092473.1|CK092473 G084P78.3pR Populus tension wood cDN... 42 0.029
gb|BI132214.1|BI132214 G133P32Y Populus cambium cDNA librar... 40 0.11
gb|CK087309.1|CK087309 A002P64.3pR Hybrid aspen plasmid lib... 38 0.45
gb|CX175271.1|CX175271 D11_re-69-5_07.ab1 leaf inoculated w... 38 0.45
>gb|CK096470.1|CK096470 UB15CPF09.3pR Populus active cambium cDNA library Populus tremula
cDNA clone UB15CPF09 3', mRNA sequence
Length = 774
Score = 48.1 bits (24), Expect = 5e-004
Identities = 45/52 (86%)
Strand = Plus / Minus
Query: 160 atgaagatgttacaatcggcgcatggatgcttgctatgaatgtaaagcatga 211
|||||||||||||||| || |||||||| || || |||||||| || |||||
Sbjct: 351 atgaagatgttacaataggtgcatggattctggcaatgaatgttaatcatga 300
>gb|CV255308.1|CV255308 WS02412.B21_K12 PTxD-ICC-N-A-14 Populus trichocarpa x Populus
deltoides cDNA clone WS02412_K12 3', mRNA sequence
Length = 736
Score = 48.1 bits (24), Expect = 5e-004
Identities = 45/52 (86%)
Strand = Plus / Minus
Query: 160 atgaagatgttacaatcggcgcatggatgcttgctatgaatgtaaagcatga 211
|||||||||||||||| || |||||||| || || |||||||| || |||||
Sbjct: 488 atgaagatgttacaataggtgcatggattctggcaatgaatgttaatcatga 437
>gb|CX655011.1|CX655011 PO01003G06 Poplar SC cDNA library Populus alba x Populus tremula
var. glandulosa cDNA clone PO01003G06 5', mRNA sequence
Length = 693
Score = 48.1 bits (24), Expect = 5e-004
Identities = 45/52 (86%)
Strand = Plus / Plus
Query: 160 atgaagatgttacaatcggcgcatggatgcttgctatgaatgtaaagcatga 211
|||||||||||||||| || |||||||| || || |||||||| || |||||
Sbjct: 415 atgaagatgttacaataggtgcatggattctggcaatgaatgttaatcatga 466
>gb|CX655147.1|CX655147 PO02030E06 Poplar SC cDNA library Populus alba x Populus tremula
var. glandulosa cDNA clone PO02030E06 5', mRNA sequence
Length = 600
Score = 48.1 bits (24), Expect = 5e-004
Identities = 45/52 (86%)
Strand = Plus / Plus
Query: 160 atgaagatgttacaatcggcgcatggatgcttgctatgaatgtaaagcatga 211
|||| ||||||||||| || ||||||||||| || |||||||| || |||||
Sbjct: 544 atgaggatgttacaattggtgcatggatgctggcaatgaatgttaatcatga 595
>gb|DT517578.1|DT517578 WS02434.B21_L09 PTxD-ICC-N-A-14 Populus trichocarpa x Populus
deltoides cDNA clone WS02434_L09 3', mRNA sequence
Length = 911
Score = 48.1 bits (24), Expect = 5e-004
Identities = 45/52 (86%)
Strand = Plus / Minus
Query: 160 atgaagatgttacaatcggcgcatggatgcttgctatgaatgtaaagcatga 211
|||||||||||||||| || |||||||| || || |||||||| || |||||
Sbjct: 505 atgaagatgttacaataggtgcatggattctggcaatgaatgttaatcatga 454
>gb|CA933430.1|CA933430 MTU5CS.P7.H12 Aspen stem cDNA Library Populus tremuloides cDNA,
mRNA sequence
Length = 111
Score = 44.1 bits (22), Expect = 0.007
Identities = 37/42 (88%)
Strand = Plus / Minus
Query: 160 atgaagatgttacaatcggcgcatggatgcttgctatgaatg 201
|||| ||||||||||| || ||||||||||| || |||||||
Sbjct: 81 atgaggatgttacaattggtgcatggatgctggcaatgaatg 40
>gb|CK092473.1|CK092473 G084P78.3pR Populus tension wood cDNA library Populus tremula x
Populus tremuloides cDNA clone G084P78 3', mRNA sequence
Length = 726
Score = 42.1 bits (21), Expect = 0.029
Identities = 36/41 (87%)
Strand = Plus / Minus
Query: 183 tggatgcttgctatgaatgtaaagcatgaagacaaccgagc 223
||||||||||| |||||||| | |||||||| ||||||||
Sbjct: 409 tggatgcttgcaatgaatgtttatcatgaagataaccgagc 369
>gb|BI132214.1|BI132214 G133P32Y Populus cambium cDNA library Populus tremula x Populus
tremuloides cDNA, mRNA sequence
Length = 145
Score = 40.1 bits (20), Expect = 0.11
Identities = 26/28 (92%)
Strand = Plus / Plus
Query: 160 atgaagatgttacaatcggcgcatggat 187
|||||||||||||||| || ||||||||
Sbjct: 103 atgaagatgttacaataggtgcatggat 130
>gb|CK087309.1|CK087309 A002P64.3pR Hybrid aspen plasmid library Populus tremula x Populus
tremuloides cDNA clone A002P64 3', mRNA sequence
Length = 668
Score = 38.2 bits (19), Expect = 0.45
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 151 tgtttgattatgaagatgt 169
|||||||||||||||||||
Sbjct: 663 tgtttgattatgaagatgt 645
>gb|CX175271.1|CX175271 D11_re-69-5_07.ab1 leaf inoculated with Marssonia pathogen of
Populus deltoides Populus deltoides cDNA, mRNA sequence
Length = 661
Score = 38.2 bits (19), Expect = 0.45
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 151 tgtttgattatgaagatgt 169
|||||||||||||||||||
Sbjct: 263 tgtttgattatgaagatgt 281
Database: Populus_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:49 PM
Number of letters in database: 203,408,664
Number of sequences in database: 369,679
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 84,092
Number of Sequences: 369679
Number of extensions: 84092
Number of successful extensions: 21609
Number of sequences better than 0.5: 10
Number of HSP's better than 0.5 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 21594
Number of HSP's gapped (non-prelim): 15
length of query: 725
length of database: 203,408,664
effective HSP length: 19
effective length of query: 706
effective length of database: 196,384,763
effective search space: 138647642678
effective search space used: 138647642678
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)