BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 3023309.2.1
(1096 letters)
Database: Populus_nucl_with_EST.fasta
369,679 sequences; 203,408,664 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CK098185.1|CK098185 A007P15.5pR Hybrid aspen plasmid lib... 68 8e-010
gb|CV231500.1|CV231500 WS0194.B21_L18 PT-DX-N-A-10 Populus ... 68 8e-010
gb|DT469860.1|DT469860 WS01919.C21_B23 PT-DX-N-A-10 Populus... 68 8e-010
gb|CV256110.1|CV256110 WS0242.B21_P10 PTxD-ICC-N-A-14 Popul... 60 2e-007
gb|DT470932.1|DT470932 WS01211.BR_I06 PT-GT-FL-A-3 Populus ... 60 2e-007
gb|DT519994.1|DT519994 WS02446.B21.1_E08 PTxD-ICC-N-A-14 Po... 60 2e-007
gb|CV233569.1|CV233569 WS01211.B21_I06 PT-GT-FL-A-3 Populus... 58 7e-007
gb|BU877501.1|BU877501 V035B04 Populus flower cDNA library ... 44 0.011
gb|CK117156.1|CK117156 B029P32 Hybrid aspen plasmid library... 44 0.011
gb|CV242744.1|CV242744 WS02515.B21_O16 PT-MB-N-A-15 Populus... 44 0.011
gb|CV272754.1|CV272754 WS0158.B21_J15 PTxN-IB-A-6 Populus t... 44 0.011
gb|CX169911.1|CX169911 F10_69-29_12.ab1 leaf inoculated wit... 44 0.011
gb|DN501877.1|DN501877 V035B04.5pR Populus male catkins cDN... 44 0.011
gb|DT480861.1|DT480861 WS02530.BR_C14 PT-MB-N-A-15 Populus ... 44 0.011
gb|DT490784.1|DT490784 WS02545.B21_P04 PT-MB-N-A-15 Populus... 44 0.011
gb|BU832419.1|BU832419 T033E05 Populus apical shoot cDNA li... 40 0.17
gb|BU883161.1|BU883161 UM87TA10 Populus flower cDNA library... 40 0.17
gb|BU883541.1|BU883541 UM93TA03 Populus flower cDNA library... 40 0.17
gb|CV228307.1|CV228307 WS0191.B21_K23 PT-DX-N-A-10 Populus ... 40 0.17
gb|CX170924.1|CX170924 D06_69-120_08.ab1 leaf inoculated wi... 40 0.17
gb|DN491329.1|DN491329 UM87TA10.3pR Populus female catkins ... 40 0.17
gb|DN499197.1|DN499197 T033E05.5pR Populus shoot meristem c... 40 0.17
gb|DN501341.1|DN501341 UM87TA10.5pR Populus female catkins ... 40 0.17
>gb|CK098185.1|CK098185 A007P15.5pR Hybrid aspen plasmid library Populus tremula x Populus
tremuloides cDNA clone A007P15 5', mRNA sequence
Length = 358
Score = 67.9 bits (34), Expect = 8e-010
Identities = 55/62 (88%)
Strand = Plus / Plus
Query: 344 atgagaattcaatatgccaagaccaaatcagatattatagcaaaggctgatggcaccttt 403
|||||||| |||||||| || || |||||||||||| |||||||||||||||| || |||
Sbjct: 75 atgagaatacaatatgcaaaaactaaatcagatattgtagcaaaggctgatggtactttt 134
Query: 404 gt 405
||
Sbjct: 135 gt 136
>gb|CV231500.1|CV231500 WS0194.B21_L18 PT-DX-N-A-10 Populus trichocarpa cDNA clone
WS0194_L18 3', mRNA sequence
Length = 849
Score = 67.9 bits (34), Expect = 8e-010
Identities = 55/62 (88%)
Strand = Plus / Minus
Query: 344 atgagaattcaatatgccaagaccaaatcagatattatagcaaaggctgatggcaccttt 403
|||||||| |||||||| || || |||||||||||| |||||||||||||||| || |||
Sbjct: 620 atgagaatacaatatgcaaaaactaaatcagatattgtagcaaaggctgatggtactttt 561
Query: 404 gt 405
||
Sbjct: 560 gt 559
Score = 44.1 bits (22), Expect = 0.011
Identities = 34/38 (89%)
Strand = Plus / Minus
Query: 236 ttcaagactttgaagcataaaggtcaagcttgggttgt 273
|||||||| ||||| || ||||| ||||||||||||||
Sbjct: 728 ttcaagacattgaaacacaaagggcaagcttgggttgt 691
>gb|DT469860.1|DT469860 WS01919.C21_B23 PT-DX-N-A-10 Populus trichocarpa cDNA clone
WS01919_B23 3', mRNA sequence
Length = 850
Score = 67.9 bits (34), Expect = 8e-010
Identities = 55/62 (88%)
Strand = Plus / Minus
Query: 344 atgagaattcaatatgccaagaccaaatcagatattatagcaaaggctgatggcaccttt 403
|||||||| |||||||| || || |||||||||||| |||||||||||||||| || |||
Sbjct: 620 atgagaatacaatatgcaaaaactaaatcagatattgtagcaaaggctgatggtactttt 561
Query: 404 gt 405
||
Sbjct: 560 gt 559
Score = 44.1 bits (22), Expect = 0.011
Identities = 34/38 (89%)
Strand = Plus / Minus
Query: 236 ttcaagactttgaagcataaaggtcaagcttgggttgt 273
|||||||| ||||| || ||||| ||||||||||||||
Sbjct: 728 ttcaagacattgaaacacaaagggcaagcttgggttgt 691
>gb|CV256110.1|CV256110 WS0242.B21_P10 PTxD-ICC-N-A-14 Populus trichocarpa x Populus
deltoides cDNA clone WS0242_P10 3', mRNA sequence
Length = 771
Score = 60.0 bits (30), Expect = 2e-007
Identities = 54/62 (87%)
Strand = Plus / Minus
Query: 344 atgagaattcaatatgccaagaccaaatcagatattatagcaaaggctgatggcaccttt 403
|||||||| |||||||| || || ||||||||||| |||||||| |||||||| || |||
Sbjct: 745 atgagaatacaatatgcaaaaactaaatcagatatcatagcaaaagctgatggtactttt 686
Query: 404 gt 405
||
Sbjct: 685 gt 684
>gb|DT470932.1|DT470932 WS01211.BR_I06 PT-GT-FL-A-3 Populus trichocarpa cDNA clone
WS01211_I06 5', mRNA sequence
Length = 644
Score = 60.0 bits (30), Expect = 2e-007
Identities = 54/62 (87%)
Strand = Plus / Plus
Query: 344 atgagaattcaatatgccaagaccaaatcagatattatagcaaaggctgatggcaccttt 403
|||||||| |||||||| || || ||||||||||| |||||||| |||||||| || |||
Sbjct: 336 atgagaatacaatatgcaaaaactaaatcagatatcatagcaaaagctgatggtactttt 395
Query: 404 gt 405
||
Sbjct: 396 gt 397
Score = 44.1 bits (22), Expect = 0.011
Identities = 43/50 (86%)
Strand = Plus / Plus
Query: 236 ttcaagactttgaagcataaaggtcaagcttgggttgtcttcgaagatgt 285
|||||||| ||||| || ||||| |||||||||||| | ||||| |||||
Sbjct: 228 ttcaagacattgaaacacaaagggcaagcttgggttattttcgaggatgt 277
Score = 44.1 bits (22), Expect = 0.011
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 140 atcaacaacctcaacgagaagatcaa 165
|||||||| |||||||||||||||||
Sbjct: 132 atcaacaatctcaacgagaagatcaa 157
>gb|DT519994.1|DT519994 WS02446.B21.1_E08 PTxD-ICC-N-A-14 Populus trichocarpa x Populus
deltoides cDNA clone WS02446_E08 3', mRNA sequence
Length = 897
Score = 60.0 bits (30), Expect = 2e-007
Identities = 54/62 (87%)
Strand = Plus / Minus
Query: 344 atgagaattcaatatgccaagaccaaatcagatattatagcaaaggctgatggcaccttt 403
|||||||| |||||||| || || ||||||||||| |||||||| |||||||| || |||
Sbjct: 704 atgagaatacaatatgcaaaaactaaatcagatatcatagcaaaagctgatggtactttt 645
Query: 404 gt 405
||
Sbjct: 644 gt 643
Score = 44.1 bits (22), Expect = 0.011
Identities = 43/50 (86%)
Strand = Plus / Minus
Query: 236 ttcaagactttgaagcataaaggtcaagcttgggttgtcttcgaagatgt 285
|||||||| ||||| || ||||| |||||||||||| | ||||| |||||
Sbjct: 812 ttcaagacattgaaacacaaagggcaagcttgggttattttcgaggatgt 763
>gb|CV233569.1|CV233569 WS01211.B21_I06 PT-GT-FL-A-3 Populus trichocarpa cDNA clone
WS01211_I06 3', mRNA sequence
Length = 668
Score = 58.0 bits (29), Expect = 7e-007
Identities = 53/61 (86%)
Strand = Plus / Minus
Query: 345 tgagaattcaatatgccaagaccaaatcagatattatagcaaaggctgatggcacctttg 404
||||||| |||||||| || || ||||||||||| |||||||| |||||||| || ||||
Sbjct: 668 tgagaatacaatatgcaaaaactaaatcagatatcatagcaaaagctgatggtacttttg 609
Query: 405 t 405
|
Sbjct: 608 t 608
>gb|BU877501.1|BU877501 V035B04 Populus flower cDNA library Populus trichocarpa cDNA 5
prime, mRNA sequence
Length = 273
Score = 44.1 bits (22), Expect = 0.011
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 140 atcaacaacctcaacgagaagatcaa 165
|||||||| |||||||||||||||||
Sbjct: 131 atcaacaatctcaacgagaagatcaa 156
>gb|CK117156.1|CK117156 B029P32 Hybrid aspen plasmid library Populus tremula x Populus
tremuloides cDNA clone B029P32 5', mRNA sequence
Length = 202
Score = 44.1 bits (22), Expect = 0.011
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 140 atcaacaacctcaacgagaagatcaa 165
|||||||| |||||||||||||||||
Sbjct: 62 atcaacaatctcaacgagaagatcaa 87
>gb|CV242744.1|CV242744 WS02515.B21_O16 PT-MB-N-A-15 Populus trichocarpa cDNA clone
WS02515_O16 3', mRNA sequence
Length = 939
Score = 44.1 bits (22), Expect = 0.011
Identities = 43/50 (86%)
Strand = Plus / Minus
Query: 236 ttcaagactttgaagcataaaggtcaagcttgggttgtcttcgaagatgt 285
|||||||| ||||| || ||||| |||||||||||| | ||||| |||||
Sbjct: 854 ttcaagacattgaaacacaaagggcaagcttgggttattttcgaggatgt 805
>gb|CV272754.1|CV272754 WS0158.B21_J15 PTxN-IB-A-6 Populus trichocarpa x Populus nigra cDNA
clone WS0158_J15 3', mRNA sequence
Length = 943
Score = 44.1 bits (22), Expect = 0.011
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 140 atcaacaacctcaacgagaagatcaa 165
|||||||| |||||||||||||||||
Sbjct: 874 atcaacaatctcaacgagaagatcaa 849
Score = 44.1 bits (22), Expect = 0.011
Identities = 43/50 (86%)
Strand = Plus / Minus
Query: 236 ttcaagactttgaagcataaaggtcaagcttgggttgtcttcgaagatgt 285
|||||||| ||||| || ||||| |||||||||||| | ||||| |||||
Sbjct: 778 ttcaagacattgaaacacaaaggccaagcttgggttattttcgaggatgt 729
>gb|CX169911.1|CX169911 F10_69-29_12.ab1 leaf inoculated with Marssonia pathogen of Populus
deltoides Populus deltoides cDNA, mRNA sequence
Length = 635
Score = 44.1 bits (22), Expect = 0.011
Identities = 43/50 (86%)
Strand = Plus / Plus
Query: 236 ttcaagactttgaagcataaaggtcaagcttgggttgtcttcgaagatgt 285
|||||||| ||||| || ||||| |||||||||||| | ||||| |||||
Sbjct: 228 ttcaagacattgaaacacaaagggcaagcttgggttattttcgaggatgt 277
Score = 44.1 bits (22), Expect = 0.011
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 140 atcaacaacctcaacgagaagatcaa 165
|||||||| |||||||||||||||||
Sbjct: 132 atcaacaatctcaacgagaagatcaa 157
>gb|DN501877.1|DN501877 V035B04.5pR Populus male catkins cDNA library Populus trichocarpa
cDNA clone V035B04 5', mRNA sequence
Length = 764
Score = 44.1 bits (22), Expect = 0.011
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 140 atcaacaacctcaacgagaagatcaa 165
|||||||| |||||||||||||||||
Sbjct: 208 atcaacaatctcaacgagaagatcaa 233
>gb|DT480861.1|DT480861 WS02530.BR_C14 PT-MB-N-A-15 Populus trichocarpa cDNA clone
WS02530_C14 5', mRNA sequence
Length = 875
Score = 44.1 bits (22), Expect = 0.011
Identities = 43/50 (86%)
Strand = Plus / Plus
Query: 236 ttcaagactttgaagcataaaggtcaagcttgggttgtcttcgaagatgt 285
|||||||| ||||| || ||||| |||||||||||| | ||||| |||||
Sbjct: 115 ttcaagacattgaaacacaaagggcaagcttgggttattttcgaggatgt 164
Score = 44.1 bits (22), Expect = 0.011
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 140 atcaacaacctcaacgagaagatcaa 165
|||||||| |||||||||||||||||
Sbjct: 19 atcaacaatctcaacgagaagatcaa 44
>gb|DT490784.1|DT490784 WS02545.B21_P04 PT-MB-N-A-15 Populus trichocarpa cDNA clone
WS02545_P04 3', mRNA sequence
Length = 804
Score = 44.1 bits (22), Expect = 0.011
Identities = 43/50 (86%)
Strand = Plus / Minus
Query: 236 ttcaagactttgaagcataaaggtcaagcttgggttgtcttcgaagatgt 285
|||||||| ||||| || ||||| |||||||||||| | ||||| |||||
Sbjct: 802 ttcaagacattgaaacacaaagggcaagcttgggttattttcgaggatgt 753
>gb|BU832419.1|BU832419 T033E05 Populus apical shoot cDNA library Populus tremula x Populus
tremuloides cDNA 5 prime, mRNA sequence
Length = 607
Score = 40.1 bits (20), Expect = 0.17
Identities = 80/100 (80%)
Strand = Plus / Plus
Query: 644 atgatgctccagatgctcttctgccagtaccctggcttcaaggaggttcggatgatcgag 703
|||||||| || ||||||||| ||||| || || || |||||||| ||||| | ||
Sbjct: 231 atgatgctgcaaatgctcttccagcagtatcccggttttaaggaggtcaggatggtggaa 290
Query: 704 gcgaagcctgggattgctttcgtggagtatggagacgaga 743
|| ||||| |||||||| || || ||||||||||| ||||
Sbjct: 291 gcaaagccagggattgcctttgtagagtatggagatgaga 330
>gb|BU883161.1|BU883161 UM87TA10 Populus flower cDNA library Populus trichocarpa cDNA 5
prime, mRNA sequence
Length = 499
Score = 40.1 bits (20), Expect = 0.17
Identities = 41/48 (85%)
Strand = Plus / Plus
Query: 313 gatgcagggctttcccttctatgacaaaactatgagaattcaatatgc 360
||||||||| ||||| || ||||| ||| ||||| | |||||||||||
Sbjct: 229 gatgcagggttttccgttttatgataaacctatgcggattcaatatgc 276
>gb|BU883541.1|BU883541 UM93TA03 Populus flower cDNA library Populus trichocarpa cDNA 5
prime, mRNA sequence
Length = 471
Score = 40.1 bits (20), Expect = 0.17
Identities = 41/48 (85%)
Strand = Plus / Plus
Query: 313 gatgcagggctttcccttctatgacaaaactatgagaattcaatatgc 360
||||||||| ||||| || ||||| ||| ||||| | |||||||||||
Sbjct: 229 gatgcagggttttccgttttatgataaacctatgcggattcaatatgc 276
>gb|CV228307.1|CV228307 WS0191.B21_K23 PT-DX-N-A-10 Populus trichocarpa cDNA clone
WS0191_K23 3', mRNA sequence
Length = 523
Score = 40.1 bits (20), Expect = 0.17
Identities = 41/48 (85%)
Strand = Plus / Plus
Query: 313 gatgcagggctttcccttctatgacaaaactatgagaattcaatatgc 360
||||||||| ||||| || ||||| ||| ||||| | |||||||||||
Sbjct: 281 gatgcagggttttccgttttatgataaacctatgcggattcaatatgc 328
>gb|CX170924.1|CX170924 D06_69-120_08.ab1 leaf inoculated with Marssonia pathogen of
Populus deltoides Populus deltoides cDNA, mRNA sequence
Length = 735
Score = 40.1 bits (20), Expect = 0.17
Identities = 80/100 (80%)
Strand = Plus / Plus
Query: 644 atgatgctccagatgctcttctgccagtaccctggcttcaaggaggttcggatgatcgag 703
|||||||| || ||||||||| ||||| || || || |||||||| ||||| | ||
Sbjct: 321 atgatgctgcaaatgctcttccagcagtatcccggttttaaggaggtcaggatggtggaa 380
Query: 704 gcgaagcctgggattgctttcgtggagtatggagacgaga 743
|| ||||| |||||||| || || ||||||||||| ||||
Sbjct: 381 gcaaagccagggattgcctttgtagagtatggagatgaga 420
>gb|DN491329.1|DN491329 UM87TA10.3pR Populus female catkins cDNA library Populus
trichocarpa cDNA clone UM87TA10 3', mRNA sequence
Length = 782
Score = 40.1 bits (20), Expect = 0.17
Identities = 41/48 (85%)
Strand = Plus / Minus
Query: 313 gatgcagggctttcccttctatgacaaaactatgagaattcaatatgc 360
||||||||| ||||| || ||||| ||| ||||| | |||||||||||
Sbjct: 697 gatgcagggttttccgttttatgataaacctatgcggattcaatatgc 650
>gb|DN499197.1|DN499197 T033E05.5pR Populus shoot meristem cDNA library Populus tremula x
Populus tremuloides cDNA clone T033E05 5', mRNA sequence
Length = 601
Score = 40.1 bits (20), Expect = 0.17
Identities = 80/100 (80%)
Strand = Plus / Plus
Query: 644 atgatgctccagatgctcttctgccagtaccctggcttcaaggaggttcggatgatcgag 703
|||||||| || ||||||||| ||||| || || || |||||||| ||||| | ||
Sbjct: 224 atgatgctgcaaatgctcttccagcagtatcccggttttaaggaggtcaggatggtggaa 283
Query: 704 gcgaagcctgggattgctttcgtggagtatggagacgaga 743
|| ||||| |||||||| || || ||||||||||| ||||
Sbjct: 284 gcaaagccagggattgcctttgtagagtatggagatgaga 323
>gb|DN501341.1|DN501341 UM87TA10.5pR Populus female catkins cDNA library Populus
trichocarpa cDNA clone UM87TA10 5', mRNA sequence
Length = 549
Score = 40.1 bits (20), Expect = 0.17
Identities = 41/48 (85%)
Strand = Plus / Plus
Query: 313 gatgcagggctttcccttctatgacaaaactatgagaattcaatatgc 360
||||||||| ||||| || ||||| ||| ||||| | |||||||||||
Sbjct: 229 gatgcagggttttccgttttatgataaacctatgcggattcaatatgc 276
Database: Populus_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:49 PM
Number of letters in database: 203,408,664
Number of sequences in database: 369,679
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 144,581
Number of Sequences: 369679
Number of extensions: 144581
Number of successful extensions: 45834
Number of sequences better than 0.5: 23
Number of HSP's better than 0.5 without gapping: 23
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 45772
Number of HSP's gapped (non-prelim): 62
length of query: 1096
length of database: 203,408,664
effective HSP length: 19
effective length of query: 1077
effective length of database: 196,384,763
effective search space: 211506389751
effective search space used: 211506389751
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)