BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 3012873.2.2
(1520 letters)
Database: Populus_nucl_with_EST.fasta
369,679 sequences; 203,408,664 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|AI166563.1|AI166563 xylem.est.383 Poplar xylem Lambda ZA... 48 0.001
gb|CK088131.1|CK088131 A039P66.3pR Hybrid aspen plasmid lib... 48 0.001
gb|CV234726.1|CV234726 WS01215.B21.1_P22 PT-GT-FL-A-3 Popul... 48 0.001
gb|CV249027.1|CV249027 WS01122.B21_M15 PT-P-FL-A-2 Populus ... 48 0.001
gb|DT496222.1|DT496222 WS01122.BR_M15 PT-P-FL-A-2 Populus t... 48 0.001
gb|DT517212.1|DT517212 WS02433.B21_K06 PTxD-ICC-N-A-14 Popu... 48 0.001
gb|DT518419.1|DT518419 WS02438.B21_B12 PTxD-ICC-N-A-14 Popu... 48 0.001
gb|DV464242.1|DV464242 MTUNUL1.P25.A01 NUL Populus fremonti... 48 0.001
gb|DV464636.1|DV464636 MTUNUL1.P3.A03 NUL Populus fremontii... 48 0.001
gb|DV464858.1|DV464858 MTUNUL1.P31.F12 NUL Populus fremonti... 48 0.001
gb|DV465223.1|DV465223 MTUNUL1.P36.G07 NUL Populus fremonti... 48 0.001
emb|AJ224986.1|PTR224986 Populus trichocarpa mRNA for cinna... 48 0.001
emb|AJ295838.1|PTR295838 Populus balsamifera subsp. trichoc... 48 0.001
gb|AY479973.1| Populus tomentosa cinnamoyl CoA reductase mR... 48 0.001
gb|CA933034.1|CA933034 MTU5CS.P2.F03 Aspen stem cDNA Librar... 44 0.016
gb|CV263877.1|CV263877 WS02023.B21_A11 PTxN-IB-N-A-11 Popul... 44 0.016
gb|BI130618.1|BI130618 G108P29Y Populus cambium cDNA librar... 42 0.062
gb|BU836879.1|BU836879 T092A06 Populus apical shoot cDNA li... 42 0.062
gb|CA925746.1|CA925746 MTU7TL.P5.D05 Aspen leaf cDNA Librar... 42 0.062
gb|CK093114.1|CK093114 G108P29.3pR Populus tension wood cDN... 42 0.062
gb|CK103217.1|CK103217 G108P29.5pR Populus tension wood cDN... 42 0.062
gb|CV241940.1|CV241940 WS02513.B21_L01 PT-MB-N-A-15 Populus... 42 0.062
gb|CV242476.1|CV242476 WS02515.B21_C16 PT-MB-N-A-15 Populus... 42 0.062
gb|CV245454.1|CV245454 WS0257.B21_H12 PT-MB-N-A-15 Populus ... 42 0.062
gb|CV247508.1|CV247508 WS01118.B21_G14 PT-P-FL-A-2 Populus ... 42 0.062
gb|BP930341.1|BP930341 BP930341 full-length enriched poplar... 42 0.062
gb|BP934141.1|BP934141 BP934141 full-length enriched poplar... 42 0.062
gb|DT469789.1|DT469789 WS01918.C21_O08 PT-DX-N-A-10 Populus... 42 0.062
gb|DT481485.1|DT481485 WS02532.BR_A04 PT-MB-N-A-15 Populus ... 42 0.062
gb|DT486815.1|DT486815 WS02532.B21_A04 PT-MB-N-A-15 Populus... 42 0.062
gb|DT488128.1|DT488128 WS02535.B21_J09 PT-MB-N-A-15 Populus... 42 0.062
gb|DT525851.1|DT525851 WS02046.C21_H10 PTxN-IB-N-A-11 Popul... 42 0.062
gb|DV465311.1|DV465311 MTUNUL1.P37.G12 NUL Populus fremonti... 42 0.062
>gb|AI166563.1|AI166563 xylem.est.383 Poplar xylem Lambda ZAPII library Populus trichocarpa
cDNA 5', mRNA sequence
Length = 425
Score = 48.1 bits (24), Expect = 0.001
Identities = 75/92 (81%)
Strand = Plus / Plus
Query: 810 gtggacctggtggtggtgaaccccgtgctggtggtgggccccctgctgcaggcgacggtg 869
|||||||| |||||||| ||||| ||||||||| | || || || ||||| | || ||
Sbjct: 190 gtggacctagtggtggttaacccagtgctggtgcttggaccattgttgcagcccactgtc 249
Query: 870 aacgccagcatcgcgcacatcctcaagtacct 901
|| || |||||| | |||||||||||||||||
Sbjct: 250 aatgctagcatcactcacatcctcaagtacct 281
>gb|CK088131.1|CK088131 A039P66.3pR Hybrid aspen plasmid library Populus tremula x Populus
tremuloides cDNA clone A039P66 3', mRNA sequence
Length = 743
Score = 48.1 bits (24), Expect = 0.001
Identities = 75/92 (81%)
Strand = Plus / Minus
Query: 810 gtggacctggtggtggtgaaccccgtgctggtggtgggccccctgctgcaggcgacggtg 869
|||||||| |||||||| ||||| ||||||||| | || || || ||||| | || ||
Sbjct: 701 gtggacctagtggtggttaacccagtgctggtgctcggaccattgttgcagcccactgtc 642
Query: 870 aacgccagcatcgcgcacatcctcaagtacct 901
|| || ||||||| |||||||||||||||||
Sbjct: 641 aatgctagcatcgttcacatcctcaagtacct 610
>gb|CV234726.1|CV234726 WS01215.B21.1_P22 PT-GT-FL-A-3 Populus trichocarpa cDNA clone
WS01215_P22 3', mRNA sequence
Length = 791
Score = 48.1 bits (24), Expect = 0.001
Identities = 75/92 (81%)
Strand = Plus / Minus
Query: 810 gtggacctggtggtggtgaaccccgtgctggtggtgggccccctgctgcaggcgacggtg 869
|||||||| |||||||| ||||| ||||||||| | || || || ||||| | || ||
Sbjct: 738 gtggacctagtggtggttaacccagtgctggtgcttggaccattgttgcagcccactgtc 679
Query: 870 aacgccagcatcgcgcacatcctcaagtacct 901
|| || |||||| | |||||||||||||||||
Sbjct: 678 aatgctagcatcactcacatcctcaagtacct 647
>gb|CV249027.1|CV249027 WS01122.B21_M15 PT-P-FL-A-2 Populus trichocarpa cDNA clone
WS01122_M15 3', mRNA sequence
Length = 717
Score = 48.1 bits (24), Expect = 0.001
Identities = 75/92 (81%)
Strand = Plus / Minus
Query: 810 gtggacctggtggtggtgaaccccgtgctggtggtgggccccctgctgcaggcgacggtg 869
|||||||| |||||||| ||||| ||||||||| | || || || ||||| | || ||
Sbjct: 647 gtggacctagtggtggttaacccagtgctggtgcttggaccattgttgcagcccactgtc 588
Query: 870 aacgccagcatcgcgcacatcctcaagtacct 901
|| || |||||| | |||||||||||||||||
Sbjct: 587 aatgctagcatcactcacatcctcaagtacct 556
>gb|DT496222.1|DT496222 WS01122.BR_M15 PT-P-FL-A-2 Populus trichocarpa cDNA clone
WS01122_M15 5', mRNA sequence
Length = 854
Score = 48.1 bits (24), Expect = 0.001
Identities = 75/92 (81%)
Strand = Plus / Plus
Query: 810 gtggacctggtggtggtgaaccccgtgctggtggtgggccccctgctgcaggcgacggtg 869
|||||||| |||||||| ||||| ||||||||| | || || || ||||| | || ||
Sbjct: 677 gtggacctagtggtggttaacccagtgctggtgcttggaccattgttgcagcccactgtc 736
Query: 870 aacgccagcatcgcgcacatcctcaagtacct 901
|| || |||||| | |||||||||||||||||
Sbjct: 737 aatgctagcatcactcacatcctcaagtacct 768
>gb|DT517212.1|DT517212 WS02433.B21_K06 PTxD-ICC-N-A-14 Populus trichocarpa x Populus
deltoides cDNA clone WS02433_K06 3', mRNA sequence
Length = 842
Score = 48.1 bits (24), Expect = 0.001
Identities = 75/92 (81%)
Strand = Plus / Minus
Query: 810 gtggacctggtggtggtgaaccccgtgctggtggtgggccccctgctgcaggcgacggtg 869
|||||||| |||||||| ||||| ||||||||| | || || || ||||| | || ||
Sbjct: 765 gtggacctagtggtggttaacccagtgctggtgcttggaccattgttgcagcccactgtc 706
Query: 870 aacgccagcatcgcgcacatcctcaagtacct 901
|| || |||||| | |||||||||||||||||
Sbjct: 705 aatgctagcatcactcacatcctcaagtacct 674
>gb|DT518419.1|DT518419 WS02438.B21_B12 PTxD-ICC-N-A-14 Populus trichocarpa x Populus
deltoides cDNA clone WS02438_B12 3', mRNA sequence
Length = 831
Score = 48.1 bits (24), Expect = 0.001
Identities = 75/92 (81%)
Strand = Plus / Minus
Query: 810 gtggacctggtggtggtgaaccccgtgctggtggtgggccccctgctgcaggcgacggtg 869
|||||||| |||||||| ||||| ||||||||| | || || || ||||| | || ||
Sbjct: 765 gtggacctagtggtggttaacccagtgctggtgcttggaccattgttgcagcccactgtc 706
Query: 870 aacgccagcatcgcgcacatcctcaagtacct 901
|| || |||||| | |||||||||||||||||
Sbjct: 705 aatgctagcatcactcacatcctcaagtacct 674
>gb|DV464242.1|DV464242 MTUNUL1.P25.A01 NUL Populus fremontii x Populus angustifolia cDNA,
mRNA sequence
Length = 866
Score = 48.1 bits (24), Expect = 0.001
Identities = 75/92 (81%)
Strand = Plus / Plus
Query: 810 gtggacctggtggtggtgaaccccgtgctggtggtgggccccctgctgcaggcgacggtg 869
|||||||| |||||||| ||||| ||||||||| | || || || ||||| | || ||
Sbjct: 637 gtggacctagtggtggttaacccagtgctggtgcttggaccattgttgcagcccactgtc 696
Query: 870 aacgccagcatcgcgcacatcctcaagtacct 901
|| || |||||| | |||||||||||||||||
Sbjct: 697 aatgctagcatcactcacatcctcaagtacct 728
>gb|DV464636.1|DV464636 MTUNUL1.P3.A03 NUL Populus fremontii x Populus angustifolia cDNA,
mRNA sequence
Length = 817
Score = 48.1 bits (24), Expect = 0.001
Identities = 75/92 (81%)
Strand = Plus / Plus
Query: 810 gtggacctggtggtggtgaaccccgtgctggtggtgggccccctgctgcaggcgacggtg 869
|||||||| |||||||| ||||| ||||||||| | || || || ||||| | || ||
Sbjct: 676 gtggacctagtggtggttaacccagtgctggtgcttggaccattgttgcagcccactgtc 735
Query: 870 aacgccagcatcgcgcacatcctcaagtacct 901
|| || |||||| | |||||||||||||||||
Sbjct: 736 aatgctagcatcactcacatcctcaagtacct 767
>gb|DV464858.1|DV464858 MTUNUL1.P31.F12 NUL Populus fremontii x Populus angustifolia cDNA,
mRNA sequence
Length = 838
Score = 48.1 bits (24), Expect = 0.001
Identities = 75/92 (81%)
Strand = Plus / Plus
Query: 810 gtggacctggtggtggtgaaccccgtgctggtggtgggccccctgctgcaggcgacggtg 869
|||||||| |||||||| ||||| ||||||||| | || || || ||||| | || ||
Sbjct: 682 gtggacctagtggtggttaacccagtgctggtgcttggaccattgttgcagcccactgtc 741
Query: 870 aacgccagcatcgcgcacatcctcaagtacct 901
|| || |||||| | |||||||||||||||||
Sbjct: 742 aatgctagcatcactcacatcctcaagtacct 773
>gb|DV465223.1|DV465223 MTUNUL1.P36.G07 NUL Populus fremontii x Populus angustifolia cDNA,
mRNA sequence
Length = 842
Score = 48.1 bits (24), Expect = 0.001
Identities = 75/92 (81%)
Strand = Plus / Plus
Query: 810 gtggacctggtggtggtgaaccccgtgctggtggtgggccccctgctgcaggcgacggtg 869
|||||||| |||||||| ||||| ||||||||| | || || || ||||| | || ||
Sbjct: 685 gtggacctagtggtggttaacccagtgctggtgcttggaccattgttgcagcccactgtc 744
Query: 870 aacgccagcatcgcgcacatcctcaagtacct 901
|| || |||||| | |||||||||||||||||
Sbjct: 745 aatgctagcatcactcacatcctcaagtacct 776
>emb|AJ224986.1|PTR224986 Populus trichocarpa mRNA for cinnamoyl CoA reductase
Length = 1376
Score = 48.1 bits (24), Expect = 0.001
Identities = 75/92 (81%)
Strand = Plus / Plus
Query: 810 gtggacctggtggtggtgaaccccgtgctggtggtgggccccctgctgcaggcgacggtg 869
|||||||| |||||||| ||||| ||||||||| | || || || ||||| | || ||
Sbjct: 645 gtggacctagtggtggttaacccagtgctggtgcttggaccattgttgcagcccactgtc 704
Query: 870 aacgccagcatcgcgcacatcctcaagtacct 901
|| || |||||| | |||||||||||||||||
Sbjct: 705 aatgctagcatcactcacatcctcaagtacct 736
>emb|AJ295838.1|PTR295838 Populus balsamifera subsp. trichocarpa ccr gene for cinnamoyl-CoA
reductase, exons 1-5
Length = 4044
Score = 48.1 bits (24), Expect = 0.001
Identities = 75/92 (81%)
Strand = Plus / Plus
Query: 810 gtggacctggtggtggtgaaccccgtgctggtggtgggccccctgctgcaggcgacggtg 869
|||||||| |||||||| ||||| ||||||||| | || || || ||||| | || ||
Sbjct: 2128 gtggacctagtggtggttaacccagtgctggtgcttggaccattgttgcagcccactgtc 2187
Query: 870 aacgccagcatcgcgcacatcctcaagtacct 901
|| || |||||| | |||||||||||||||||
Sbjct: 2188 aatgctagcatcactcacatcctcaagtacct 2219
>gb|AY479973.1| Populus tomentosa cinnamoyl CoA reductase mRNA, complete cds
Length = 1113
Score = 48.1 bits (24), Expect = 0.001
Identities = 75/92 (81%)
Strand = Plus / Plus
Query: 810 gtggacctggtggtggtgaaccccgtgctggtggtgggccccctgctgcaggcgacggtg 869
|||||||| |||||||| ||||| ||||||||| | || || || ||||| | || ||
Sbjct: 599 gtggacctagtggtggttaacccagtgctggtgctcggaccattgttgcagcccactgtc 658
Query: 870 aacgccagcatcgcgcacatcctcaagtacct 901
|| || ||||||| |||||||||||||||||
Sbjct: 659 aatgctagcatcgttcacatcctcaagtacct 690
>gb|CA933034.1|CA933034 MTU5CS.P2.F03 Aspen stem cDNA Library Populus tremuloides cDNA,
mRNA sequence
Length = 187
Score = 44.1 bits (22), Expect = 0.016
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 813 gacctggtggtggtgaaccccgtgctggtg 842
||||| |||||||||||||| |||||||||
Sbjct: 61 gacctagtggtggtgaacccagtgctggtg 90
>gb|CV263877.1|CV263877 WS02023.B21_A11 PTxN-IB-N-A-11 Populus trichocarpa x Populus nigra
cDNA clone WS02023_A11 3', mRNA sequence
Length = 920
Score = 44.1 bits (22), Expect = 0.016
Identities = 79/98 (80%)
Strand = Plus / Minus
Query: 1056 atcctcgccaagctcttccccgagtaccccgtcccagccaggtgctccgacgaggtgaat 1115
||||| || ||| ||||||| ||||||||| |||| ||| |||||| || ||| |||
Sbjct: 489 atccttgcaaagttcttccctgagtaccccatccctaccaagtgctcagatgagaagaac 430
Query: 1116 ccgcggaagcagccgtacaagttctccaaccagaagct 1153
|| |||| || || ||||||||||| |||||||||||
Sbjct: 429 ccaaggaaacaaccttacaagttctcaaaccagaagct 392
>gb|BI130618.1|BI130618 G108P29Y Populus cambium cDNA library Populus tremula x Populus
tremuloides cDNA, mRNA sequence
Length = 379
Score = 42.1 bits (21), Expect = 0.062
Identities = 24/25 (96%)
Strand = Plus / Minus
Query: 810 gtggacctggtggtggtgaaccccg 834
|||||||||||||||||| ||||||
Sbjct: 174 gtggacctggtggtggtggaccccg 150
>gb|BU836879.1|BU836879 T092A06 Populus apical shoot cDNA library Populus tremula x Populus
tremuloides cDNA 5 prime, mRNA sequence
Length = 582
Score = 42.1 bits (21), Expect = 0.062
Identities = 24/25 (96%)
Strand = Plus / Minus
Query: 810 gtggacctggtggtggtgaaccccg 834
|||||||||||||||||| ||||||
Sbjct: 186 gtggacctggtggtggtggaccccg 162
>gb|CA925746.1|CA925746 MTU7TL.P5.D05 Aspen leaf cDNA Library Populus tremuloides cDNA,
mRNA sequence
Length = 640
Score = 42.1 bits (21), Expect = 0.062
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 810 gtggacctggtggtggtgaaccccg 834
|||||||||||||||||| ||||||
Sbjct: 408 gtggacctggtggtggtggaccccg 432
>gb|CK093114.1|CK093114 G108P29.3pR Populus tension wood cDNA library Populus tremula x
Populus tremuloides cDNA clone G108P29 3', mRNA sequence
Length = 753
Score = 42.1 bits (21), Expect = 0.062
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 810 gtggacctggtggtggtgaaccccg 834
|||||||||||||||||| ||||||
Sbjct: 480 gtggacctggtggtggtggaccccg 504
>gb|CK103217.1|CK103217 G108P29.5pR Populus tension wood cDNA library Populus tremula x
Populus tremuloides cDNA clone G108P29 5', mRNA sequence
Length = 383
Score = 42.1 bits (21), Expect = 0.062
Identities = 24/25 (96%)
Strand = Plus / Minus
Query: 810 gtggacctggtggtggtgaaccccg 834
|||||||||||||||||| ||||||
Sbjct: 162 gtggacctggtggtggtggaccccg 138
>gb|CV241940.1|CV241940 WS02513.B21_L01 PT-MB-N-A-15 Populus trichocarpa cDNA clone
WS02513_L01 3', mRNA sequence
Length = 794
Score = 42.1 bits (21), Expect = 0.062
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 810 gtggacctggtggtggtgaaccccg 834
|||||||||||||||||| ||||||
Sbjct: 550 gtggacctggtggtggtggaccccg 574
>gb|CV242476.1|CV242476 WS02515.B21_C16 PT-MB-N-A-15 Populus trichocarpa cDNA clone
WS02515_C16 3', mRNA sequence
Length = 822
Score = 42.1 bits (21), Expect = 0.062
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 810 gtggacctggtggtggtgaaccccg 834
|||||||||||||||||| ||||||
Sbjct: 553 gtggacctggtggtggtggaccccg 577
>gb|CV245454.1|CV245454 WS0257.B21_H12 PT-MB-N-A-15 Populus trichocarpa cDNA clone
WS0257_H12 3', mRNA sequence
Length = 789
Score = 42.1 bits (21), Expect = 0.062
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 810 gtggacctggtggtggtgaaccccg 834
|||||||||||||||||| ||||||
Sbjct: 426 gtggacctggtggtggtggaccccg 450
>gb|CV247508.1|CV247508 WS01118.B21_G14 PT-P-FL-A-2 Populus trichocarpa cDNA clone
WS01118_G14 3', mRNA sequence
Length = 332
Score = 42.1 bits (21), Expect = 0.062
Identities = 27/29 (93%)
Strand = Plus / Minus
Query: 1125 cagccgtacaagttctccaaccagaagct 1153
||||| ||||||||||| |||||||||||
Sbjct: 327 cagccttacaagttctcaaaccagaagct 299
>gb|BP930341.1|BP930341 BP930341 full-length enriched poplar cDNA library Populus nigra
cDNA clone PnFL1-008_M22.r 3', mRNA sequence
Length = 651
Score = 42.1 bits (21), Expect = 0.062
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 810 gtggacctggtggtggtgaaccccg 834
|||||||||||||||||| ||||||
Sbjct: 531 gtggacctggtggtggtggaccccg 555
>gb|BP934141.1|BP934141 BP934141 full-length enriched poplar cDNA library Populus nigra
cDNA clone PnFL1-060_O17.r 3', mRNA sequence
Length = 572
Score = 42.1 bits (21), Expect = 0.062
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 810 gtggacctggtggtggtgaaccccg 834
|||||||||||||||||| ||||||
Sbjct: 531 gtggacctggtggtggtggaccccg 555
>gb|DT469789.1|DT469789 WS01918.C21_O08 PT-DX-N-A-10 Populus trichocarpa cDNA clone
WS01918_O08 3', mRNA sequence
Length = 861
Score = 42.1 bits (21), Expect = 0.062
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 810 gtggacctggtggtggtgaaccccg 834
|||||||||||||||||| ||||||
Sbjct: 526 gtggacctggtggtggtggaccccg 550
>gb|DT481485.1|DT481485 WS02532.BR_A04 PT-MB-N-A-15 Populus trichocarpa cDNA clone
WS02532_A04 5', mRNA sequence
Length = 657
Score = 42.1 bits (21), Expect = 0.062
Identities = 24/25 (96%)
Strand = Plus / Minus
Query: 810 gtggacctggtggtggtgaaccccg 834
|||||||||||||||||| ||||||
Sbjct: 210 gtggacctggtggtggtggaccccg 186
>gb|DT486815.1|DT486815 WS02532.B21_A04 PT-MB-N-A-15 Populus trichocarpa cDNA clone
WS02532_A04 3', mRNA sequence
Length = 657
Score = 42.1 bits (21), Expect = 0.062
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 810 gtggacctggtggtggtgaaccccg 834
|||||||||||||||||| ||||||
Sbjct: 448 gtggacctggtggtggtggaccccg 472
>gb|DT488128.1|DT488128 WS02535.B21_J09 PT-MB-N-A-15 Populus trichocarpa cDNA clone
WS02535_J09 3', mRNA sequence
Length = 880
Score = 42.1 bits (21), Expect = 0.062
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 810 gtggacctggtggtggtgaaccccg 834
|||||||||||||||||| ||||||
Sbjct: 541 gtggacctggtggtggtggaccccg 565
>gb|DT525851.1|DT525851 WS02046.C21_H10 PTxN-IB-N-A-11 Populus trichocarpa x Populus nigra
cDNA clone WS02046_H10 3', mRNA sequence
Length = 581
Score = 42.1 bits (21), Expect = 0.062
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 810 gtggacctggtggtggtgaaccccg 834
|||||||||||||||||| ||||||
Sbjct: 550 gtggacctggtggtggtggaccccg 574
>gb|DV465311.1|DV465311 MTUNUL1.P37.G12 NUL Populus fremontii x Populus angustifolia cDNA,
mRNA sequence
Length = 919
Score = 42.1 bits (21), Expect = 0.062
Identities = 24/25 (96%)
Strand = Plus / Minus
Query: 810 gtggacctggtggtggtgaaccccg 834
|||||||||||||||||| ||||||
Sbjct: 806 gtggacctggtggtggtggaccccg 782
Database: Populus_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:49 PM
Number of letters in database: 203,408,664
Number of sequences in database: 369,679
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 105,457
Number of Sequences: 369679
Number of extensions: 105457
Number of successful extensions: 28007
Number of sequences better than 0.5: 33
Number of HSP's better than 0.5 without gapping: 18
Number of HSP's successfully gapped in prelim test: 15
Number of HSP's that attempted gapping in prelim test: 27970
Number of HSP's gapped (non-prelim): 62
length of query: 1520
length of database: 203,408,664
effective HSP length: 19
effective length of query: 1501
effective length of database: 196,384,763
effective search space: 294773529263
effective search space used: 294773529263
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)