BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 3012720.2.1
(1130 letters)
Database: Populus_nucl_with_EST.fasta
369,679 sequences; 203,408,664 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CV255453.1|CV255453 WS02414.B21_A22 PTxD-ICC-N-A-14 Popu... 54 1e-005
gb|DT479200.1|DT479200 WS02525.BR_A24 PT-MB-N-A-15 Populus ... 54 1e-005
gb|DT484312.1|DT484312 WS02525.B21_A24 PT-MB-N-A-15 Populus... 54 1e-005
gb|DT508385.1|DT508385 WS02420.BR_N08 PTxD-ICC-N-A-14 Popul... 54 1e-005
gb|DT512995.1|DT512995 WS02420.B21_N08 PTxD-ICC-N-A-14 Popu... 54 1e-005
gb|BU821072.1|BU821072 UB18CPG01 Populus tremula cambium cD... 50 2e-004
gb|CN522880.1|CN522880 GQ0122.B3_M23 GQ012 Populus trichoca... 48 7e-004
gb|BU897901.1|BU897901 X071F05 Populus wood cDNA library Po... 46 0.003
gb|CK088015.1|CK088015 A031P29.3pR Hybrid aspen plasmid lib... 46 0.003
gb|BU894809.1|BU894809 X015C11 Populus wood cDNA library Po... 44 0.012
gb|AI162534.1|AI162534 A019P11U Hybrid aspen plasmid librar... 42 0.046
gb|CA929578.1|CA929578 MTU2CA.P15.G03 Aspen apex cDNA Libra... 42 0.046
gb|CF231357.1|CF231357 PtaC0020D9D0907 Poplar cDNA library ... 42 0.046
gb|CF234427.1|CF234427 Ptajxojxo2E10E1010 Poplar cDNA libra... 42 0.046
gb|CK087727.1|CK087727 A019P11.3pR Hybrid aspen plasmid lib... 42 0.046
gb|CN520112.1|CN520112 GQ0107.B3_L06 GQ010 Populus trichoca... 42 0.046
gb|AJ776291.1|AJ776291 AJ776291 Populus euphratica root 3-6... 42 0.046
gb|BU884373.1|BU884373 R009G07 Populus root cDNA library Po... 40 0.18
gb|BU885984.1|BU885984 R038H11 Populus root cDNA library Po... 40 0.18
gb|CK102426.1|CK102426 G077P24.5pR Populus tension wood cDN... 40 0.18
gb|CN520678.1|CN520678 GQ0105.B3_G08 GQ010 Populus trichoca... 40 0.18
gb|DT516698.1|DT516698 WS02432.B21_C13 PTxD-ICC-N-A-14 Popu... 40 0.18
>gb|CV255453.1|CV255453 WS02414.B21_A22 PTxD-ICC-N-A-14 Populus trichocarpa x Populus
deltoides cDNA clone WS02414_A22 3', mRNA sequence
Length = 606
Score = 54.0 bits (27), Expect = 1e-005
Identities = 90/111 (81%)
Strand = Plus / Plus
Query: 395 gtagttatcaagaccccattctccgagctcccgaccaaaaccgctccgcttgttccctcc 454
|||||| ||||| ||||||||||| | || || |||||||| || ||||| | |||||
Sbjct: 271 gtagttttcaagtccccattctcctaattcacgcccaaaaccactgcgcttaatgcctcc 330
Query: 455 ccaaggagcttgaacgaagcatggttgggaacaatttatccaaataatacc 505
||| ||||||||| ||||||||| || || ||||| ||||| | ||||||
Sbjct: 331 ccatggagcttgacagaagcatggctgtgagcaattgatccagacaatacc 381
>gb|DT479200.1|DT479200 WS02525.BR_A24 PT-MB-N-A-15 Populus trichocarpa cDNA clone
WS02525_A24 5', mRNA sequence
Length = 538
Score = 54.0 bits (27), Expect = 1e-005
Identities = 90/111 (81%)
Strand = Plus / Minus
Query: 395 gtagttatcaagaccccattctccgagctcccgaccaaaaccgctccgcttgttccctcc 454
|||||| ||||| ||||||||||| | || || |||||||| || ||||| | |||||
Sbjct: 388 gtagttttcaagtccccattctcctaattcacgcccaaaaccactgcgcttaatgcctcc 329
Query: 455 ccaaggagcttgaacgaagcatggttgggaacaatttatccaaataatacc 505
||| ||||||||| ||||||||| || || ||||| ||||| | ||||||
Sbjct: 328 ccatggagcttgacagaagcatggctgtgagcaattgatccagacaatacc 278
>gb|DT484312.1|DT484312 WS02525.B21_A24 PT-MB-N-A-15 Populus trichocarpa cDNA clone
WS02525_A24 3', mRNA sequence
Length = 538
Score = 54.0 bits (27), Expect = 1e-005
Identities = 90/111 (81%)
Strand = Plus / Plus
Query: 395 gtagttatcaagaccccattctccgagctcccgaccaaaaccgctccgcttgttccctcc 454
|||||| ||||| ||||||||||| | || || |||||||| || ||||| | |||||
Sbjct: 151 gtagttttcaagtccccattctcctaattcacgcccaaaaccactgcgcttaatgcctcc 210
Query: 455 ccaaggagcttgaacgaagcatggttgggaacaatttatccaaataatacc 505
||| ||||||||| ||||||||| || || ||||| ||||| | ||||||
Sbjct: 211 ccatggagcttgacagaagcatggctgtgagcaattgatccagacaatacc 261
>gb|DT508385.1|DT508385 WS02420.BR_N08 PTxD-ICC-N-A-14 Populus trichocarpa x Populus
deltoides cDNA clone WS02420_N08 5', mRNA sequence
Length = 566
Score = 54.0 bits (27), Expect = 1e-005
Identities = 90/111 (81%)
Strand = Plus / Minus
Query: 395 gtagttatcaagaccccattctccgagctcccgaccaaaaccgctccgcttgttccctcc 454
|||||| ||||| ||||||||||| | || || |||||||| || ||||| | |||||
Sbjct: 341 gtagttttcaagtccccattctcctaattcacgcccaaaaccactgcgcttaatgcctcc 282
Query: 455 ccaaggagcttgaacgaagcatggttgggaacaatttatccaaataatacc 505
||| ||||||||| ||||||||| || || ||||| ||||| | ||||||
Sbjct: 281 ccatggagcttgacagaagcatggctgtgagcaattgatccagacaatacc 231
>gb|DT512995.1|DT512995 WS02420.B21_N08 PTxD-ICC-N-A-14 Populus trichocarpa x Populus
deltoides cDNA clone WS02420_N08 3', mRNA sequence
Length = 566
Score = 54.0 bits (27), Expect = 1e-005
Identities = 90/111 (81%)
Strand = Plus / Plus
Query: 395 gtagttatcaagaccccattctccgagctcccgaccaaaaccgctccgcttgttccctcc 454
|||||| ||||| ||||||||||| | || || |||||||| || ||||| | |||||
Sbjct: 226 gtagttttcaagtccccattctcctaattcacgcccaaaaccactgcgcttaatgcctcc 285
Query: 455 ccaaggagcttgaacgaagcatggttgggaacaatttatccaaataatacc 505
||| ||||||||| ||||||||| || || ||||| ||||| | ||||||
Sbjct: 286 ccatggagcttgacagaagcatggctgtgagcaattgatccagacaatacc 336
>gb|BU821072.1|BU821072 UB18CPG01 Populus tremula cambium cDNA library Populus tremula cDNA 5
prime, mRNA sequence
Length = 451
Score = 50.1 bits (25), Expect = 2e-004
Identities = 37/41 (90%)
Strand = Plus / Minus
Query: 1041 cttttcccaccaagctctaatgagacaggcttaaccatttg 1081
||||||||||||||||| | ||| |||||||| ||||||||
Sbjct: 153 cttttcccaccaagctccattgaaacaggcttgaccatttg 113
>gb|CN522880.1|CN522880 GQ0122.B3_M23 GQ012 Populus trichocarpa x Populus deltoides cDNA
clone GQ0122_M23 5', mRNA sequence
Length = 562
Score = 48.1 bits (24), Expect = 7e-004
Identities = 69/84 (82%)
Strand = Plus / Plus
Query: 395 gtagttatcaagaccccattctccgagctcccgaccaaaaccgctccgcttgttccctcc 454
|||||| ||||| ||||||||||| | || || |||||||| || ||||| | |||||
Sbjct: 200 gtagttttcaagtccccattctcctaattcacgcccaaaaccactgcgcttaatgcctcc 259
Query: 455 ccaaggagcttgaacgaagcatgg 478
||| ||||||||| |||||||||
Sbjct: 260 ccatggagcttgacagaagcatgg 283
>gb|BU897901.1|BU897901 X071F05 Populus wood cDNA library Populus tremula x Populus
tremuloides cDNA 5 prime, mRNA sequence
Length = 709
Score = 46.1 bits (23), Expect = 0.003
Identities = 89/111 (80%)
Strand = Plus / Minus
Query: 395 gtagttatcaagaccccattctccgagctcccgaccaaaaccgctccgcttgttccctcc 454
|||||| ||||| ||||||||||| | || || |||||||| || ||||| | |||||
Sbjct: 535 gtagttttcaagtccccattctcctaattcacgcccaaaaccactgcgcttaatgcctcc 476
Query: 455 ccaaggagcttgaacgaagcatggttgggaacaatttatccaaataatacc 505
||| ||||| ||| ||||||||| || || ||||| ||||| | ||||||
Sbjct: 475 ccatggagcctgacagaagcatggctgtgagcaattgatccagacaatacc 425
>gb|CK088015.1|CK088015 A031P29.3pR Hybrid aspen plasmid library Populus tremula x Populus
tremuloides cDNA clone A031P29 3', mRNA sequence
Length = 611
Score = 46.1 bits (23), Expect = 0.003
Identities = 89/111 (80%)
Strand = Plus / Plus
Query: 395 gtagttatcaagaccccattctccgagctcccgaccaaaaccgctccgcttgttccctcc 454
|||||| ||||| ||||||||||| | || || |||||||| || ||||| | |||||
Sbjct: 278 gtagttttcaagtccccattctcctaattcacgcccaaaaccactgcgcttaatgcctcc 337
Query: 455 ccaaggagcttgaacgaagcatggttgggaacaatttatccaaataatacc 505
||| ||||| ||| ||||||||| || || ||||| ||||| | ||||||
Sbjct: 338 ccatggagcctgacagaagcatggctgtgagcaattgatccagacaatacc 388
>gb|BU894809.1|BU894809 X015C11 Populus wood cDNA library Populus tremula x Populus
tremuloides cDNA 5 prime, mRNA sequence
Length = 652
Score = 44.1 bits (22), Expect = 0.012
Identities = 79/98 (80%)
Strand = Plus / Minus
Query: 408 ccccattctccgagctcccgaccaaaaccgctccgcttgttccctccccaaggagcttga 467
||||||||||| | || || |||||||| || ||||| | |||||||| |||||||||
Sbjct: 289 ccccattctcctaattctcgcccaaaaccactgcgcttaatgcctccccatggagcttga 230
Query: 468 acgaagcatggttgggaacaatttatccaaataatacc 505
||||||||| || || ||||| ||||| | ||||||
Sbjct: 229 cagaagcatggctgtgagcaattgatccatacaatacc 192
>gb|AI162534.1|AI162534 A019P11U Hybrid aspen plasmid library Populus tremula x Populus
tremuloides cDNA 5', mRNA sequence
Length = 425
Score = 42.1 bits (21), Expect = 0.046
Identities = 36/41 (87%)
Strand = Plus / Minus
Query: 1041 cttttcccaccaagctctaatgagacaggcttaaccatttg 1081
||||||||||| ||||| | ||| |||||||| ||||||||
Sbjct: 67 cttttcccacctagctccattgaaacaggcttgaccatttg 27
>gb|CA929578.1|CA929578 MTU2CA.P15.G03 Aspen apex cDNA Library Populus tremuloides cDNA, mRNA
sequence
Length = 678
Score = 42.1 bits (21), Expect = 0.046
Identities = 36/41 (87%)
Strand = Plus / Minus
Query: 1041 cttttcccaccaagctctaatgagacaggcttaaccatttg 1081
||||||||||| ||||| | ||| |||||||| ||||||||
Sbjct: 435 cttttcccacctagctccattgaaacaggcttgaccatttg 395
>gb|CF231357.1|CF231357 PtaC0020D9D0907 Poplar cDNA library from cambial zone Populus alba x
Populus tremula cDNA 5', mRNA sequence
Length = 683
Score = 42.1 bits (21), Expect = 0.046
Identities = 36/41 (87%)
Strand = Plus / Minus
Query: 1041 cttttcccaccaagctctaatgagacaggcttaaccatttg 1081
||||||||||| ||||| | ||| |||||||| ||||||||
Sbjct: 581 cttttcccacctagctccattgaaacaggcttgaccatttg 541
>gb|CF234427.1|CF234427 Ptajxojxo2E10E1010 Poplar cDNA library from young opposite xylem
Populus alba x Populus tremula cDNA 5', mRNA sequence
Length = 655
Score = 42.1 bits (21), Expect = 0.046
Identities = 135/173 (78%)
Strand = Plus / Minus
Query: 333 ggaggctggtaccatccccacggttcatccgagcaatacttggtgacttgcttaactgtc 392
|||| ||||||||| ||||| |||||||| ||| ||| | || || ||||| || ||
Sbjct: 419 ggagactggtaccaaccccatggttcatcagagatatattgcgttacctgcttcacactc 360
Query: 393 aggtagttatcaagaccccattctccgagctcccgaccaaaaccgctccgcttgttccct 452
| ||| || ||||| ||||||||||| | || || |||||||| || ||||| | |||
Sbjct: 359 aagtaattttcaagtccccattctcctaattctcgcccaaaaccactgcgcttaatgcct 300
Query: 453 ccccaaggagcttgaacgaagcatggttgggaacaatttatccaaataatacc 505
||||| ||||| ||| ||||||||| || || ||||| ||||| | ||||||
Sbjct: 299 ccccatggagcctgacagaagcatggctgtgagcaattgatccatacaatacc 247
>gb|CK087727.1|CK087727 A019P11.3pR Hybrid aspen plasmid library Populus tremula x Populus
tremuloides cDNA clone A019P11 3', mRNA sequence
Length = 608
Score = 42.1 bits (21), Expect = 0.046
Identities = 135/173 (78%)
Strand = Plus / Plus
Query: 333 ggaggctggtaccatccccacggttcatccgagcaatacttggtgacttgcttaactgtc 392
|||| ||||||||| ||||| |||||||| ||| ||| | || || ||||| || ||
Sbjct: 319 ggagactggtaccaaccccatggttcatcagagatatattgcgttacctgcttcacactc 378
Query: 393 aggtagttatcaagaccccattctccgagctcccgaccaaaaccgctccgcttgttccct 452
| ||| || ||||| ||||||||||| | || || |||||||| || ||||| | |||
Sbjct: 379 aagtaattttcaagtccccattctcctaattctcgcccaaaaccactgcgcttaatgcct 438
Query: 453 ccccaaggagcttgaacgaagcatggttgggaacaatttatccaaataatacc 505
||||| ||||| ||| ||||||||| || || ||||| ||||| | ||||||
Sbjct: 439 ccccatggagcctgacagaagcatggctgtgagcaattgatccatacaatacc 491
>gb|CN520112.1|CN520112 GQ0107.B3_L06 GQ010 Populus trichocarpa x Populus deltoides cDNA
clone GQ0107_L06 5', mRNA sequence
Length = 788
Score = 42.1 bits (21), Expect = 0.046
Identities = 36/41 (87%)
Strand = Plus / Minus
Query: 1041 cttttcccaccaagctctaatgagacaggcttaaccatttg 1081
||||||||||| ||||| | ||| |||||||| ||||||||
Sbjct: 512 cttttcccacctagctccattgaaacaggcttgaccatttg 472
>gb|AJ776291.1|AJ776291 AJ776291 Populus euphratica root 3-6 months Populus euphratica cDNA
clone P0000400011D07F1, mRNA sequence
Length = 604
Score = 42.1 bits (21), Expect = 0.046
Identities = 36/41 (87%)
Strand = Plus / Minus
Query: 1041 cttttcccaccaagctctaatgagacaggcttaaccatttg 1081
||||||||||| ||||| | ||| |||||||| ||||||||
Sbjct: 233 cttttcccacctagctccattgaaacaggcttgaccatttg 193
>gb|BU884373.1|BU884373 R009G07 Populus root cDNA library Populus tremula x Populus
tremuloides cDNA 5 prime, mRNA sequence
Length = 388
Score = 40.1 bits (20), Expect = 0.18
Identities = 68/84 (80%)
Strand = Plus / Minus
Query: 395 gtagttatcaagaccccattctccgagctcccgaccaaaaccgctccgcttgttccctcc 454
|||||| ||||| ||||||||||| | || || |||||||| || ||||| | |||||
Sbjct: 126 gtagttttcaagtccccattctcctaattcacgcccaaaaccactgcgcttaatgcctcc 67
Query: 455 ccaaggagcttgaacgaagcatgg 478
||| ||||| ||| |||||||||
Sbjct: 66 ccatggagcctgacagaagcatgg 43
>gb|BU885984.1|BU885984 R038H11 Populus root cDNA library Populus tremula x Populus
tremuloides cDNA 5 prime, mRNA sequence
Length = 351
Score = 40.1 bits (20), Expect = 0.18
Identities = 68/84 (80%)
Strand = Plus / Minus
Query: 395 gtagttatcaagaccccattctccgagctcccgaccaaaaccgctccgcttgttccctcc 454
|||||| ||||| ||||||||||| | || || |||||||| || ||||| | |||||
Sbjct: 147 gtagttttcaagtccccattctcctaattcacgcccaaaaccactgcgcttaatgcctcc 88
Query: 455 ccaaggagcttgaacgaagcatgg 478
||| ||||| ||| |||||||||
Sbjct: 87 ccatggagcctgacagaagcatgg 64
>gb|CK102426.1|CK102426 G077P24.5pR Populus tension wood cDNA library Populus tremula x
Populus tremuloides cDNA clone G077P24 5', mRNA sequence
Length = 501
Score = 40.1 bits (20), Expect = 0.18
Identities = 83/104 (79%)
Strand = Plus / Minus
Query: 402 tcaagaccccattctccgagctcccgaccaaaaccgctccgcttgttccctccccaagga 461
||||| ||||||||||| | || || |||||||| || ||||| | |||||||| |||
Sbjct: 417 tcaagtccccattctcctaattctcgcccaaaaccactgcgcttaatgcctccccatgga 358
Query: 462 gcttgaacgaagcatggttgggaacaatttatccaaataatacc 505
|| ||| ||||||||| || || ||||| ||||| | ||||||
Sbjct: 357 gcctgacagaagcatggctgtgagcaattgatccatacaatacc 314
>gb|CN520678.1|CN520678 GQ0105.B3_G08 GQ010 Populus trichocarpa x Populus deltoides cDNA
clone GQ0105_G08 5', mRNA sequence
Length = 757
Score = 40.1 bits (20), Expect = 0.18
Identities = 83/104 (79%)
Strand = Plus / Minus
Query: 402 tcaagaccccattctccgagctcccgaccaaaaccgctccgcttgttccctccccaagga 461
||||| ||||||||||| | || || |||||||| || ||||| | |||||||| |||
Sbjct: 612 tcaagtccccattctcctaattcacgcccaaaaccactgcgcttaatgcctccccatgga 553
Query: 462 gcttgaacgaagcatggttgggaacaatttatccaaataatacc 505
|| ||| ||||||||| || || ||||| ||||| | ||||||
Sbjct: 552 gcctgacagaagcatggctgtgagcaattgatccatacaatacc 509
>gb|DT516698.1|DT516698 WS02432.B21_C13 PTxD-ICC-N-A-14 Populus trichocarpa x Populus
deltoides cDNA clone WS02432_C13 3', mRNA sequence
Length = 914
Score = 40.1 bits (20), Expect = 0.18
Identities = 83/104 (79%)
Strand = Plus / Plus
Query: 402 tcaagaccccattctccgagctcccgaccaaaaccgctccgcttgttccctccccaagga 461
||||| ||||||||||| | || || |||||||| || ||||| | |||||||| |||
Sbjct: 384 tcaagtccccattctcctaattcacgcccaaaaccactgcgcttaatgcctccccatgga 443
Query: 462 gcttgaacgaagcatggttgggaacaatttatccaaataatacc 505
|| ||| ||||||||| || || ||||| ||||| | ||||||
Sbjct: 444 gcctgacagaagcatggctgtgagcaattgatccatacaatacc 487
Database: Populus_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:49 PM
Number of letters in database: 203,408,664
Number of sequences in database: 369,679
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 139,532
Number of Sequences: 369679
Number of extensions: 139532
Number of successful extensions: 36519
Number of sequences better than 0.5: 22
Number of HSP's better than 0.5 without gapping: 22
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 36483
Number of HSP's gapped (non-prelim): 36
length of query: 1130
length of database: 203,408,664
effective HSP length: 19
effective length of query: 1111
effective length of database: 196,384,763
effective search space: 218183471693
effective search space used: 218183471693
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)