BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2950292.2.1
(1205 letters)
Database: Populus_nucl_with_EST.fasta
369,679 sequences; 203,408,664 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CX168823.1|CX168823 E07_69-80_09.ab1 leaf inoculated wit... 98 1e-018
gb|BP924384.1|BP924384 BP924384 full-length enriched poplar... 94 1e-017
gb|BI068874.1|BI068874 C028P46U Populus strain T89 leaves P... 76 3e-012
gb|CN518663.1|CN518663 GQ0102.B3_A24 GQ010 Populus trichoca... 48 8e-004
gb|CV262886.1|CV262886 WS0202.B21_M09 PTxN-IB-N-A-11 Populu... 46 0.003
gb|CV261988.1|CV261988 WS02018.B21_F08 PTxN-IB-N-A-11 Popul... 42 0.049
>gb|CX168823.1|CX168823 E07_69-80_09.ab1 leaf inoculated with Marssonia pathogen of Populus
deltoides Populus deltoides cDNA, mRNA sequence
Length = 656
Score = 97.6 bits (49), Expect = 1e-018
Identities = 121/145 (83%)
Strand = Plus / Plus
Query: 177 tcaagtggcaacaaagggatattgaatacacattttggcaaatggttcatctctgtactt 236
||||||||||||||| ||| ||||||||||| || ||||||||| || | | || || |
Sbjct: 175 tcaagtggcaacaaatggacattgaatacactttctggcaaatgctttacttatgcacct 234
Query: 237 caccaaaagtagtctatcagcacaccaaatatcacaagcaaacaaagaaccagtgggccc 296
|||| ||||| ||||||||||| || || | |||||| ||||| ||||| || ||||| |
Sbjct: 235 caccgaaagttgtctatcagcatactaagtttcacaaacaaactaagaatcaatgggcac 294
Query: 297 gtgatgatcctgcatttgttgttat 321
||||||| ||||| |||||||||||
Sbjct: 295 gtgatgaccctgcttttgttgttat 319
Score = 48.1 bits (24), Expect = 8e-004
Identities = 39/44 (88%)
Strand = Plus / Plus
Query: 500 agccatgttgttgagcaacgcgtggagtggctctatgcatttga 543
|||||||||||||||||||| || || ||||| ||||| |||||
Sbjct: 501 agccatgttgttgagcaacgggttgaatggctatatgcgtttga 544
>gb|BP924384.1|BP924384 BP924384 full-length enriched poplar cDNA library Populus nigra
cDNA clone PnFL1-031_I06.f 5', mRNA sequence
Length = 366
Score = 93.7 bits (47), Expect = 1e-017
Identities = 116/139 (83%)
Strand = Plus / Plus
Query: 162 acctccgccgcatcgtcaagtggcaacaaagggatattgaatacacattttggcaaatgg 221
||||||| || ||| ||||||||||||||| ||| | |||||||| || |||||||||
Sbjct: 228 acctccgtcgaatcatcaagtggcaacaaatggacgtagaatacactttctggcaaatgc 287
Query: 222 ttcatctctgtacttcaccaaaagtagtctatcagcacaccaaatatcacaagcaaacaa 281
|||| | || || ||||||||||| |||||||||||||| || |||||||| ||||| |
Sbjct: 288 ttcacttgtgcacctcaccaaaagtcgtctatcagcacactaagtatcacaaacaaacta 347
Query: 282 agaaccagtgggcccgtga 300
|||| || ||||| |||||
Sbjct: 348 agaatcaatgggcacgtga 366
>gb|BI068874.1|BI068874 C028P46U Populus strain T89 leaves Populus tremula x Populus
tremuloides cDNA, mRNA sequence
Length = 408
Score = 75.8 bits (38), Expect = 3e-012
Identities = 109/133 (81%)
Strand = Plus / Plus
Query: 177 tcaagtggcaacaaagggatattgaatacacattttggcaaatggttcatctctgtactt 236
||||||||||||||| ||| ||||||||||| || ||||||||| || | | || || |
Sbjct: 171 tcaagtggcaacaaatggacattgaatacactttctggcaaatgctttacttgtgcacct 230
Query: 237 caccaaaagtagtctatcagcacaccaaatatcacaagcaaacaaagaaccagtgggccc 296
|||| ||||| | ||||||||| || || | |||||| ||||| ||||| || ||||| |
Sbjct: 231 caccgaaagttgnctatcagcatactaagtttcacaaacaaactaagaatcaatgggcac 290
Query: 297 gtgatgatcctgc 309
||||||| |||||
Sbjct: 291 gtgatgaccctgc 303
>gb|CN518663.1|CN518663 GQ0102.B3_A24 GQ010 Populus trichocarpa x Populus deltoides cDNA
clone GQ0102_A24 5', mRNA sequence
Length = 611
Score = 48.1 bits (24), Expect = 8e-004
Identities = 39/44 (88%)
Strand = Plus / Plus
Query: 500 agccatgttgttgagcaacgcgtggagtggctctatgcatttga 543
|||||||||||||||||||| || || ||||| ||||| |||||
Sbjct: 9 agccatgttgttgagcaacgggttgaatggctatatgcgtttga 52
>gb|CV262886.1|CV262886 WS0202.B21_M09 PTxN-IB-N-A-11 Populus trichocarpa x Populus nigra
cDNA clone WS0202_M09 3', mRNA sequence
Length = 917
Score = 46.1 bits (23), Expect = 0.003
Identities = 50/59 (84%)
Strand = Plus / Minus
Query: 719 tttctagatagaacaacattcttcctgtatccgattggtctcgtcatcatcctgtctcc 777
||||| || ||||||||||| ||||| ||||| |||||| | ||||| ||||||||||
Sbjct: 772 tttctggagagaacaacatttttcctctatccaattggtgttgtcattgtcctgtctcc 714
>gb|CV261988.1|CV261988 WS02018.B21_F08 PTxN-IB-N-A-11 Populus trichocarpa x Populus nigra
cDNA clone WS02018_F08 3', mRNA sequence
Length = 876
Score = 42.1 bits (21), Expect = 0.049
Identities = 36/41 (87%)
Strand = Plus / Minus
Query: 281 aagaaccagtgggcccgtgatgatcctgcatttgttgttat 321
||||| || ||||| |||||||| ||||| |||||||||||
Sbjct: 874 aagaatcaatgggcacgtgatgaccctgcttttgttgttat 834
Score = 42.1 bits (21), Expect = 0.049
Identities = 36/41 (87%)
Strand = Plus / Minus
Query: 503 catgttgttgagcaacgcgtggagtggctctatgcatttga 543
||||||||||||||||| || || ||||| ||||| |||||
Sbjct: 648 catgttgttgagcaacgggttgaatggctatatgcgtttga 608
Database: Populus_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:49 PM
Number of letters in database: 203,408,664
Number of sequences in database: 369,679
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 141,860
Number of Sequences: 369679
Number of extensions: 141860
Number of successful extensions: 39132
Number of sequences better than 0.5: 6
Number of HSP's better than 0.5 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 39117
Number of HSP's gapped (non-prelim): 13
length of query: 1205
length of database: 203,408,664
effective HSP length: 19
effective length of query: 1186
effective length of database: 196,384,763
effective search space: 232912328918
effective search space used: 232912328918
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)