BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2950290.2.2
(867 letters)
Database: Populus_nucl_with_EST.fasta
369,679 sequences; 203,408,664 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|BI137597.1|BI137597 F089P12Y Populus flower cDNA library... 54 9e-006
gb|CX656125.1|CX656125 PO02047C01 Poplar SC cDNA library Po... 48 6e-004
gb|CX654770.1|CX654770 PO02059D12 Poplar SC cDNA library Po... 46 0.002
gb|CX654842.1|CX654842 PO02060E04 Poplar SC cDNA library Po... 46 0.002
gb|CX655255.1|CX655255 PO02032B05 Poplar SC cDNA library Po... 46 0.002
gb|CX656198.1|CX656198 PO02048F07 Poplar SC cDNA library Po... 46 0.002
gb|CX656264.1|CX656264 PO02051D02 Poplar SC cDNA library Po... 46 0.002
gb|BI137576.1|BI137576 F088P66Y Populus flower cDNA library... 44 0.009
gb|BI136180.1|BI136180 F064P61Y Populus flower cDNA library... 42 0.035
gb|CX654266.1|CX654266 PO02016E10 Poplar SC cDNA library Po... 42 0.035
gb|BI136294.1|BI136294 F066P21Y Populus flower cDNA library... 40 0.14
>gb|BI137597.1|BI137597 F089P12Y Populus flower cDNA library Populus trichocarpa cDNA, mRNA
sequence
Length = 329
Score = 54.0 bits (27), Expect = 9e-006
Identities = 27/27 (100%)
Strand = Plus / Minus
Query: 841 gtgccgaatcctgcagcccgggggatc 867
|||||||||||||||||||||||||||
Sbjct: 47 gtgccgaatcctgcagcccgggggatc 21
>gb|CX656125.1|CX656125 PO02047C01 Poplar SC cDNA library Populus alba x Populus tremula
var. glandulosa cDNA clone PO02047C01 5', mRNA sequence
Length = 626
Score = 48.1 bits (24), Expect = 6e-004
Identities = 27/28 (96%)
Strand = Plus / Minus
Query: 836 acctggtgccgaatcctgcagcccgggg 863
|||| |||||||||||||||||||||||
Sbjct: 50 acctcgtgccgaatcctgcagcccgggg 23
>gb|CX654770.1|CX654770 PO02059D12 Poplar SC cDNA library Populus alba x Populus tremula
var. glandulosa cDNA clone PO02059D12 5', mRNA sequence
Length = 604
Score = 46.1 bits (23), Expect = 0.002
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 841 gtgccgaatcctgcagcccgggg 863
|||||||||||||||||||||||
Sbjct: 33 gtgccgaatcctgcagcccgggg 11
>gb|CX654842.1|CX654842 PO02060E04 Poplar SC cDNA library Populus alba x Populus tremula
var. glandulosa cDNA clone PO02060E04 5', mRNA sequence
Length = 680
Score = 46.1 bits (23), Expect = 0.002
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 841 gtgccgaatcctgcagcccgggg 863
|||||||||||||||||||||||
Sbjct: 33 gtgccgaatcctgcagcccgggg 11
>gb|CX655255.1|CX655255 PO02032B05 Poplar SC cDNA library Populus alba x Populus tremula
var. glandulosa cDNA clone PO02032B05 5', mRNA sequence
Length = 712
Score = 46.1 bits (23), Expect = 0.002
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 841 gtgccgaatcctgcagcccgggg 863
|||||||||||||||||||||||
Sbjct: 51 gtgccgaatcctgcagcccgggg 29
>gb|CX656198.1|CX656198 PO02048F07 Poplar SC cDNA library Populus alba x Populus tremula
var. glandulosa cDNA clone PO02048F07 5', mRNA sequence
Length = 482
Score = 46.1 bits (23), Expect = 0.002
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 841 gtgccgaatcctgcagcccgggg 863
|||||||||||||||||||||||
Sbjct: 33 gtgccgaatcctgcagcccgggg 11
>gb|CX656264.1|CX656264 PO02051D02 Poplar SC cDNA library Populus alba x Populus tremula
var. glandulosa cDNA clone PO02051D02 5', mRNA sequence
Length = 314
Score = 46.1 bits (23), Expect = 0.002
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 841 gtgccgaatcctgcagcccgggg 863
|||||||||||||||||||||||
Sbjct: 27 gtgccgaatcctgcagcccgggg 5
>gb|BI137576.1|BI137576 F088P66Y Populus flower cDNA library Populus trichocarpa cDNA, mRNA
sequence
Length = 469
Score = 44.1 bits (22), Expect = 0.009
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 841 gtgccgaatcctgcagcccggg 862
||||||||||||||||||||||
Sbjct: 22 gtgccgaatcctgcagcccggg 1
>gb|BI136180.1|BI136180 F064P61Y Populus flower cDNA library Populus trichocarpa cDNA, mRNA
sequence
Length = 489
Score = 42.1 bits (21), Expect = 0.035
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 841 gtgccgaatcctgcagcccgg 861
|||||||||||||||||||||
Sbjct: 21 gtgccgaatcctgcagcccgg 1
>gb|CX654266.1|CX654266 PO02016E10 Poplar SC cDNA library Populus alba x Populus tremula
var. glandulosa cDNA clone PO02016E10 5', mRNA sequence
Length = 394
Score = 42.1 bits (21), Expect = 0.035
Identities = 31/33 (93%), Gaps = 1/33 (3%)
Strand = Plus / Minus
Query: 836 acctggtgccgaatcctgc-agcccgggggatc 867
|||| |||||||||||||| |||||||||||||
Sbjct: 65 acctcgtgccgaatcctgcaagcccgggggatc 33
>gb|BI136294.1|BI136294 F066P21Y Populus flower cDNA library Populus trichocarpa cDNA, mRNA
sequence
Length = 394
Score = 40.1 bits (20), Expect = 0.14
Identities = 23/24 (95%)
Strand = Plus / Minus
Query: 840 ggtgccgaatcctgcagcccgggg 863
|||||||| |||||||||||||||
Sbjct: 24 ggtgccgattcctgcagcccgggg 1
Database: Populus_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:49 PM
Number of letters in database: 203,408,664
Number of sequences in database: 369,679
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 107,129
Number of Sequences: 369679
Number of extensions: 107129
Number of successful extensions: 29298
Number of sequences better than 0.5: 11
Number of HSP's better than 0.5 without gapping: 10
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 29287
Number of HSP's gapped (non-prelim): 11
length of query: 867
length of database: 203,408,664
effective HSP length: 19
effective length of query: 848
effective length of database: 196,384,763
effective search space: 166534279024
effective search space used: 166534279024
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)