BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2950089.2.2
(1044 letters)
Database: Populus_nucl_with_EST.fasta
369,679 sequences; 203,408,664 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|AI164945.1|AI164945 A071P32U Hybrid aspen plasmid librar... 58 7e-007
gb|BU871910.1|BU871910 Q036A01 Populus flower cDNA library ... 58 7e-007
gb|BU873882.1|BU873882 Q061A01 Populus flower cDNA library ... 58 7e-007
gb|CK099512.1|CK099512 A071P32.5pR Hybrid aspen plasmid lib... 58 7e-007
gb|CV246557.1|CV246557 WS01111.B21_B06 PT-P-FL-A-2 Populus ... 58 7e-007
gb|DT499923.1|DT499923 WS9991.BR_L17 PT-P-FL-A-2 Populus tr... 58 7e-007
gb|BU896264.1|BU896264 X038A10 Populus wood cDNA library Po... 40 0.17
gb|DN483755.1|DN483755 PSO202G05 Populus tomentiglandulosa ... 40 0.17
gb|DN492782.1|DN492782 X038A10.3pR Populus wood cDNA librar... 40 0.17
gb|DN502794.1|DN502794 X038A10.5pR Populus wood cDNA librar... 40 0.17
>gb|AI164945.1|AI164945 A071P32U Hybrid aspen plasmid library Populus tremula x Populus
tremuloides cDNA 5', mRNA sequence
Length = 342
Score = 58.0 bits (29), Expect = 7e-007
Identities = 68/81 (83%)
Strand = Plus / Plus
Query: 173 cttgcttatcctctatatgcttctgttagagcaatagagacaaaaaatcctgtagatgat 232
|||| ||||||||||||||| || |||| ||||| ||||||||| || ||| ||||||
Sbjct: 146 cttgtttatcctctatatgcctcaattagggcaatcgagacaaaatctcatgtggatgat 205
Query: 233 cagcagtggctcacttactgg 253
|||| ||||| |||||||||
Sbjct: 206 aagcaatggcttacttactgg 226
>gb|BU871910.1|BU871910 Q036A01 Populus flower cDNA library Populus trichocarpa cDNA 5
prime, mRNA sequence
Length = 407
Score = 58.0 bits (29), Expect = 7e-007
Identities = 68/81 (83%)
Strand = Plus / Plus
Query: 173 cttgcttatcctctatatgcttctgttagagcaatagagacaaaaaatcctgtagatgat 232
|||| ||||||||||||||| || |||| ||||| ||||||||| || ||| ||||||
Sbjct: 138 cttgtttatcctctatatgcctcaattagggcaatcgagacaaaatctcatgttgatgat 197
Query: 233 cagcagtggctcacttactgg 253
|||| ||||| |||||||||
Sbjct: 198 aagcaatggcttacttactgg 218
>gb|BU873882.1|BU873882 Q061A01 Populus flower cDNA library Populus trichocarpa cDNA 5
prime, mRNA sequence
Length = 555
Score = 58.0 bits (29), Expect = 7e-007
Identities = 68/81 (83%)
Strand = Plus / Plus
Query: 173 cttgcttatcctctatatgcttctgttagagcaatagagacaaaaaatcctgtagatgat 232
|||| ||||||||||||||| || |||| ||||| ||||||||| || ||| ||||||
Sbjct: 142 cttgtttatcctctatatgcctcaattagggcaatcgagacaaaatctcatgttgatgat 201
Query: 233 cagcagtggctcacttactgg 253
|||| ||||| |||||||||
Sbjct: 202 aagcaatggcttacttactgg 222
Score = 40.1 bits (20), Expect = 0.17
Identities = 32/36 (88%)
Strand = Plus / Plus
Query: 476 gatgatgttctgtcagctgcagagagatatattgaa 511
||||||||||| || |||||||||| ||| ||||||
Sbjct: 451 gatgatgttctatctgctgcagagaaatacattgaa 486
>gb|CK099512.1|CK099512 A071P32.5pR Hybrid aspen plasmid library Populus tremula x Populus
tremuloides cDNA clone A071P32 5', mRNA sequence
Length = 384
Score = 58.0 bits (29), Expect = 7e-007
Identities = 68/81 (83%)
Strand = Plus / Plus
Query: 173 cttgcttatcctctatatgcttctgttagagcaatagagacaaaaaatcctgtagatgat 232
|||| ||||||||||||||| || |||| ||||| ||||||||| || ||| ||||||
Sbjct: 189 cttgtttatcctctatatgcctcaattagggcaatcgagacaaaatctcatgtggatgat 248
Query: 233 cagcagtggctcacttactgg 253
|||| ||||| |||||||||
Sbjct: 249 aagcaatggcttacttactgg 269
>gb|CV246557.1|CV246557 WS01111.B21_B06 PT-P-FL-A-2 Populus trichocarpa cDNA clone
WS01111_B06 3', mRNA sequence
Length = 767
Score = 58.0 bits (29), Expect = 7e-007
Identities = 68/81 (83%)
Strand = Plus / Minus
Query: 173 cttgcttatcctctatatgcttctgttagagcaatagagacaaaaaatcctgtagatgat 232
|||| ||||||||||||||| || |||| ||||| ||||||||| || ||| ||||||
Sbjct: 674 cttgtttatcctctatatgcctcaattagggcaatcgagacaaaatctcatgttgatgat 615
Query: 233 cagcagtggctcacttactgg 253
|||| ||||| |||||||||
Sbjct: 614 aagcaatggcttacttactgg 594
>gb|DT499923.1|DT499923 WS9991.BR_L17 PT-P-FL-A-2 Populus trichocarpa cDNA clone
WS01111_B06 5', mRNA sequence
Length = 483
Score = 58.0 bits (29), Expect = 7e-007
Identities = 68/81 (83%)
Strand = Plus / Plus
Query: 173 cttgcttatcctctatatgcttctgttagagcaatagagacaaaaaatcctgtagatgat 232
|||| ||||||||||||||| || |||| ||||| ||||||||| || ||| ||||||
Sbjct: 234 cttgtttatcctctatatgcctcaattagggcaatcgagacaaaatctcatgttgatgat 293
Query: 233 cagcagtggctcacttactgg 253
|||| ||||| |||||||||
Sbjct: 294 aagcaatggcttacttactgg 314
>gb|BU896264.1|BU896264 X038A10 Populus wood cDNA library Populus tremula x Populus
tremuloides cDNA 5 prime, mRNA sequence
Length = 355
Score = 40.1 bits (20), Expect = 0.17
Identities = 26/28 (92%)
Strand = Plus / Plus
Query: 885 gtttatgtgctttttggatggtgtcctt 912
|||||||| ||||| |||||||||||||
Sbjct: 219 gtttatgtccttttgggatggtgtcctt 246
>gb|DN483755.1|DN483755 PSO202G05 Populus tomentiglandulosa T. Lee cDNA library Populus
tomentiglandulosa cDNA, mRNA sequence
Length = 602
Score = 40.1 bits (20), Expect = 0.17
Identities = 32/36 (88%)
Strand = Plus / Plus
Query: 476 gatgatgttctgtcagctgcagagagatatattgaa 511
||||||||||| || |||||||||| ||| ||||||
Sbjct: 208 gatgatgttctatctgctgcagagaaatacattgaa 243
>gb|DN492782.1|DN492782 X038A10.3pR Populus wood cDNA library Populus tremula x Populus
tremuloides cDNA clone X038A10 3', mRNA sequence
Length = 351
Score = 40.1 bits (20), Expect = 0.17
Identities = 26/28 (92%)
Strand = Plus / Minus
Query: 885 gtttatgtgctttttggatggtgtcctt 912
|||||||| ||||| |||||||||||||
Sbjct: 130 gtttatgtccttttgggatggtgtcctt 103
>gb|DN502794.1|DN502794 X038A10.5pR Populus wood cDNA library Populus tremula x Populus
tremuloides cDNA clone X038A10 5', mRNA sequence
Length = 381
Score = 40.1 bits (20), Expect = 0.17
Identities = 26/28 (92%)
Strand = Plus / Plus
Query: 885 gtttatgtgctttttggatggtgtcctt 912
|||||||| ||||| |||||||||||||
Sbjct: 221 gtttatgtccttttgggatggtgtcctt 248
Database: Populus_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:49 PM
Number of letters in database: 203,408,664
Number of sequences in database: 369,679
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 121,948
Number of Sequences: 369679
Number of extensions: 121948
Number of successful extensions: 33670
Number of sequences better than 0.5: 10
Number of HSP's better than 0.5 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 33650
Number of HSP's gapped (non-prelim): 20
length of query: 1044
length of database: 203,408,664
effective HSP length: 19
effective length of query: 1025
effective length of database: 196,384,763
effective search space: 201294382075
effective search space used: 201294382075
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)