BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2950080.2.1
(687 letters)
Database: Populus_nucl_with_EST.fasta
369,679 sequences; 203,408,664 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|BU819420.1|BU819420 UA43BPD10 Populus tremula cambium cD... 46 0.002
gb|BU861402.1|BU861402 S001F06 Populus imbibed seed cDNA li... 46 0.002
gb|BU875718.1|BU875718 V010E03 Populus flower cDNA library ... 46 0.002
gb|BU889406.1|BU889406 P020D11 Populus petioles cDNA librar... 46 0.002
gb|CV245956.1|CV245956 WS0259.B21_N12 PT-MB-N-A-15 Populus ... 46 0.002
gb|CV249594.1|CV249594 WS01124.B21_L04 PT-P-FL-A-2 Populus ... 46 0.002
gb|CV250998.1|CV250998 WS0115.B21_I11 PT-P-FL-A-2 Populus t... 46 0.002
gb|CV251228.1|CV251228 WS0116.B21_E11 PT-P-FL-A-2 Populus t... 46 0.002
gb|CV256299.1|CV256299 WS0243.B21_H15 PTxD-ICC-N-A-14 Popul... 46 0.002
gb|CV272243.1|CV272243 WS0157.B21_B10 PTxN-IB-A-6 Populus t... 46 0.002
gb|CX177599.1|CX177599 C08_45-66_06.ab1 leaf inoculated wit... 46 0.002
gb|DT496843.1|DT496843 WS01124.BR_L04 PT-P-FL-A-2 Populus t... 46 0.002
gb|DT498496.1|DT498496 WS0115.BR_I11 PT-P-FL-A-2 Populus tr... 46 0.002
gb|DT498758.1|DT498758 WS0116.BR_E11 PT-P-FL-A-2 Populus tr... 46 0.002
gb|DT499496.1|DT499496 WS0118.BR_H15 PT-P-FL-A-2 Populus tr... 46 0.002
gb|DT518003.1|DT518003 WS02435.B21_O19 PTxD-ICC-N-A-14 Popu... 46 0.002
gb|BU869309.1|BU869309 M128F04 Populus flower cDNA library ... 42 0.027
gb|BU894702.1|BU894702 X013E05 Populus wood cDNA library Po... 42 0.027
gb|CA928747.1|CA928747 MTU6TR.P6.D03 Aspen root cDNA Librar... 42 0.027
gb|CA932459.1|CA932459 MTU5CS.P13.C04 Aspen stem cDNA Libra... 42 0.027
gb|CV239227.1|CV239227 WS0231.B21_L17 PT-MB-A-13 Populus tr... 42 0.027
gb|CV241685.1|CV241685 WS02512.B21_P08 PT-MB-N-A-15 Populus... 42 0.027
gb|DT477849.1|DT477849 WS02521.BR_C16 PT-MB-N-A-15 Populus ... 42 0.027
gb|DT479239.1|DT479239 WS02525.BR_C23 PT-MB-N-A-15 Populus ... 42 0.027
gb|DT482925.1|DT482925 WS02521.B21_C16 PT-MB-N-A-15 Populus... 42 0.027
gb|DT484355.1|DT484355 WS02525.B21_C23 PT-MB-N-A-15 Populus... 42 0.027
gb|DT488984.1|DT488984 WS02537.B21_P19 PT-MB-N-A-15 Populus... 42 0.027
gb|CN550028.1|CN550028 GQ0242.B3_B18 GQ024 Populus trichoca... 38 0.43
gb|CV251879.1|CV251879 WS0118.B21_H15 PT-P-FL-A-2 Populus t... 38 0.43
gb|CV264568.1|CV264568 WS02024.B21_N23 PTxN-IB-N-A-11 Popul... 38 0.43
>gb|BU819420.1|BU819420 UA43BPD10 Populus tremula cambium cDNA library Populus tremula cDNA
5 prime, mRNA sequence
Length = 613
Score = 46.1 bits (23), Expect = 0.002
Identities = 77/95 (81%)
Strand = Plus / Plus
Query: 209 gacctggtgtgcgacgagcttgaggacatgatggaagaaggtggtatactagtagattac 268
||||||||||| || || || || || || |||||||||||||| | |||| || ||
Sbjct: 125 gacctggtgtgtgatgaactcgaagatataatggaagaaggtggaaacatagtggactat 184
Query: 269 cacggatgtgatttctttccagaacgttggtttga 303
|| || ||||||||||||||||| || ||||||||
Sbjct: 185 catggttgtgatttctttccagagcgatggtttga 219
Score = 38.2 bits (19), Expect = 0.43
Identities = 28/31 (90%)
Strand = Plus / Plus
Query: 384 ccaacaacatagagtgcgaaatcttccaagt 414
|||||||||| || || ||||||||||||||
Sbjct: 300 ccaacaacatggaatgtgaaatcttccaagt 330
>gb|BU861402.1|BU861402 S001F06 Populus imbibed seed cDNA library Populus tremula cDNA 5
prime, mRNA sequence
Length = 786
Score = 46.1 bits (23), Expect = 0.002
Identities = 77/95 (81%)
Strand = Plus / Plus
Query: 209 gacctggtgtgcgacgagcttgaggacatgatggaagaaggtggtatactagtagattac 268
||||||||||| || || || || || || |||||||||||||| | |||| || ||
Sbjct: 329 gacctggtgtgtgatgaactcgaagatataatggaagaaggtggaaacatagtggactat 388
Query: 269 cacggatgtgatttctttccagaacgttggtttga 303
|| || ||||||||||||||||| || ||||||||
Sbjct: 389 catggttgtgatttctttccagagcgatggtttga 423
Score = 38.2 bits (19), Expect = 0.43
Identities = 28/31 (90%)
Strand = Plus / Plus
Query: 384 ccaacaacatagagtgcgaaatcttccaagt 414
|||||||||| || || ||||||||||||||
Sbjct: 504 ccaacaacatggaatgtgaaatcttccaagt 534
>gb|BU875718.1|BU875718 V010E03 Populus flower cDNA library Populus trichocarpa cDNA 5
prime, mRNA sequence
Length = 542
Score = 46.1 bits (23), Expect = 0.002
Identities = 77/95 (81%)
Strand = Plus / Plus
Query: 209 gacctggtgtgcgacgagcttgaggacatgatggaagaaggtggtatactagtagattac 268
||||||||||| || ||||| || || | |||||||||||||| | |||| || ||
Sbjct: 315 gacctggtgtgtgatgagctcgaagatttaatggaagaaggtggaaacatagtggactat 374
Query: 269 cacggatgtgatttctttccagaacgttggtttga 303
|| || ||||||||||||||||| || ||||||||
Sbjct: 375 catggttgtgatttctttccagagcgatggtttga 409
Score = 38.2 bits (19), Expect = 0.43
Identities = 28/31 (90%)
Strand = Plus / Plus
Query: 384 ccaacaacatagagtgcgaaatcttccaagt 414
|||||||||| || || ||||||||||||||
Sbjct: 490 ccaacaacatggaatgtgaaatcttccaagt 520
>gb|BU889406.1|BU889406 P020D11 Populus petioles cDNA library Populus tremula cDNA 5 prime,
mRNA sequence
Length = 573
Score = 46.1 bits (23), Expect = 0.002
Identities = 77/95 (81%)
Strand = Plus / Plus
Query: 209 gacctggtgtgcgacgagcttgaggacatgatggaagaaggtggtatactagtagattac 268
||||||||||| || || || || || || |||||||||||||| | |||| || ||
Sbjct: 421 gacctggtgtgtgatgaactcgaagatataatggaagaaggtggaaacatagtggactat 480
Query: 269 cacggatgtgatttctttccagaacgttggtttga 303
|| || ||||||||||||||||| || ||||||||
Sbjct: 481 catggttgtgatttctttccagagcgatggtttga 515
>gb|CV245956.1|CV245956 WS0259.B21_N12 PT-MB-N-A-15 Populus trichocarpa cDNA clone
WS0259_N12 3', mRNA sequence
Length = 774
Score = 46.1 bits (23), Expect = 0.002
Identities = 77/95 (81%)
Strand = Plus / Minus
Query: 209 gacctggtgtgcgacgagcttgaggacatgatggaagaaggtggtatactagtagattac 268
||||||||||| || || || || || || |||||||||||||| | |||| || ||
Sbjct: 670 gacctggtgtgtgatgaactcgaagatataatggaagaaggtggaaacatagtggactat 611
Query: 269 cacggatgtgatttctttccagaacgttggtttga 303
|| || ||||||||||||||||| || ||||||||
Sbjct: 610 catggttgtgatttctttccagagcgatggtttga 576
Score = 38.2 bits (19), Expect = 0.43
Identities = 28/31 (90%)
Strand = Plus / Minus
Query: 384 ccaacaacatagagtgcgaaatcttccaagt 414
|||||||||| || || ||||||||||||||
Sbjct: 360 ccaacaacatggaatgtgaaatcttccaagt 330
>gb|CV249594.1|CV249594 WS01124.B21_L04 PT-P-FL-A-2 Populus trichocarpa cDNA clone
WS01124_L04 3', mRNA sequence
Length = 601
Score = 46.1 bits (23), Expect = 0.002
Identities = 77/95 (81%)
Strand = Plus / Minus
Query: 209 gacctggtgtgcgacgagcttgaggacatgatggaagaaggtggtatactagtagattac 268
||||||||||| || || || || || || |||||||||||||| | |||| || ||
Sbjct: 542 gacctggtgtgtgatgaactcgaagatataatggaagaaggtggaaacatagtggactat 483
Query: 269 cacggatgtgatttctttccagaacgttggtttga 303
|| || ||||||||||||||||| || ||||||||
Sbjct: 482 catggttgtgatttctttccagagcgatggtttga 448
Score = 38.2 bits (19), Expect = 0.43
Identities = 28/31 (90%)
Strand = Plus / Minus
Query: 384 ccaacaacatagagtgcgaaatcttccaagt 414
|||||||||| || || ||||||||||||||
Sbjct: 367 ccaacaacatggaatgtgaaatcttccaagt 337
>gb|CV250998.1|CV250998 WS0115.B21_I11 PT-P-FL-A-2 Populus trichocarpa cDNA clone
WS0115_I11 3', mRNA sequence
Length = 642
Score = 46.1 bits (23), Expect = 0.002
Identities = 77/95 (81%)
Strand = Plus / Minus
Query: 209 gacctggtgtgcgacgagcttgaggacatgatggaagaaggtggtatactagtagattac 268
||||||||||| || || || || || || |||||||||||||| | |||| || ||
Sbjct: 561 gacctggtgtgtgatgaactcgaagatataatggaagaaggtggaaacatagtggactat 502
Query: 269 cacggatgtgatttctttccagaacgttggtttga 303
|| || ||||||||||||||||| || ||||||||
Sbjct: 501 catggttgtgatttctttccagagcgatggtttga 467
Score = 38.2 bits (19), Expect = 0.43
Identities = 28/31 (90%)
Strand = Plus / Minus
Query: 384 ccaacaacatagagtgcgaaatcttccaagt 414
|||||||||| || || ||||||||||||||
Sbjct: 386 ccaacaacatggaatgtgaaatcttccaagt 356
>gb|CV251228.1|CV251228 WS0116.B21_E11 PT-P-FL-A-2 Populus trichocarpa cDNA clone
WS0116_E11 3', mRNA sequence
Length = 631
Score = 46.1 bits (23), Expect = 0.002
Identities = 77/95 (81%)
Strand = Plus / Minus
Query: 209 gacctggtgtgcgacgagcttgaggacatgatggaagaaggtggtatactagtagattac 268
||||||||||| || || || || || || |||||||||||||| | |||| || ||
Sbjct: 550 gacctggtgtgtgatgaactcgaagatataatggaagaaggtggaaacatagtggactat 491
Query: 269 cacggatgtgatttctttccagaacgttggtttga 303
|| || ||||||||||||||||| || ||||||||
Sbjct: 490 catggttgtgatttctttccagagcgatggtttga 456
Score = 38.2 bits (19), Expect = 0.43
Identities = 28/31 (90%)
Strand = Plus / Minus
Query: 384 ccaacaacatagagtgcgaaatcttccaagt 414
|||||||||| || || ||||||||||||||
Sbjct: 375 ccaacaacatggaatgtgaaatcttccaagt 345
>gb|CV256299.1|CV256299 WS0243.B21_H15 PTxD-ICC-N-A-14 Populus trichocarpa x Populus
deltoides cDNA clone WS0243_H15 3', mRNA sequence
Length = 862
Score = 46.1 bits (23), Expect = 0.002
Identities = 77/95 (81%)
Strand = Plus / Minus
Query: 209 gacctggtgtgcgacgagcttgaggacatgatggaagaaggtggtatactagtagattac 268
||||||||||| || || || || || || |||||||||||||| | |||| || ||
Sbjct: 544 gacctggtgtgtgatgaactcgaagatataatggaagaaggtggaaacatagtggactat 485
Query: 269 cacggatgtgatttctttccagaacgttggtttga 303
|| || ||||||||||||||||| || ||||||||
Sbjct: 484 catggttgtgatttctttccagagcgatggtttga 450
Score = 38.2 bits (19), Expect = 0.43
Identities = 28/31 (90%)
Strand = Plus / Minus
Query: 384 ccaacaacatagagtgcgaaatcttccaagt 414
|||||||||| || || ||||||||||||||
Sbjct: 369 ccaacaacatggaatgtgaaatcttccaagt 339
>gb|CV272243.1|CV272243 WS0157.B21_B10 PTxN-IB-A-6 Populus trichocarpa x Populus nigra cDNA
clone WS0157_B10 3', mRNA sequence
Length = 698
Score = 46.1 bits (23), Expect = 0.002
Identities = 77/95 (81%)
Strand = Plus / Minus
Query: 209 gacctggtgtgcgacgagcttgaggacatgatggaagaaggtggtatactagtagattac 268
||||||||||| || || || || || || |||||||||||||| | |||| || ||
Sbjct: 519 gacctggtgtgtgatgaactcgaagatataatggaagaaggtggaaacatagtggactat 460
Query: 269 cacggatgtgatttctttccagaacgttggtttga 303
|| || ||||||||||||||||| || ||||||||
Sbjct: 459 catggttgtgatttctttccagagcgatggtttga 425
Score = 38.2 bits (19), Expect = 0.43
Identities = 28/31 (90%)
Strand = Plus / Minus
Query: 384 ccaacaacatagagtgcgaaatcttccaagt 414
|||||||||| || || ||||||||||||||
Sbjct: 344 ccaacaacatggaatgtgaaatcttccaagt 314
>gb|CX177599.1|CX177599 C08_45-66_06.ab1 leaf inoculated with Marssonia pathogen of Populus
euramericana Populus x canadensis cDNA, mRNA sequence
Length = 654
Score = 46.1 bits (23), Expect = 0.002
Identities = 77/95 (81%)
Strand = Plus / Plus
Query: 209 gacctggtgtgcgacgagcttgaggacatgatggaagaaggtggtatactagtagattac 268
||||||||||| || || || || || || |||||||||||||| | |||| || ||
Sbjct: 441 gacctggtgtgtgatgaactcgaagatataatggaagaaggtggaaacatagtggactat 500
Query: 269 cacggatgtgatttctttccagaacgttggtttga 303
|| || ||||||||||||||||| || ||||||||
Sbjct: 501 catggttgtgatttctttccagagcgatggtttga 535
>gb|DT496843.1|DT496843 WS01124.BR_L04 PT-P-FL-A-2 Populus trichocarpa cDNA clone
WS01124_L04 5', mRNA sequence
Length = 879
Score = 46.1 bits (23), Expect = 0.002
Identities = 77/95 (81%)
Strand = Plus / Plus
Query: 209 gacctggtgtgcgacgagcttgaggacatgatggaagaaggtggtatactagtagattac 268
||||||||||| || || || || || || |||||||||||||| | |||| || ||
Sbjct: 338 gacctggtgtgtgatgaactcgaagatataatggaagaaggtggaaacatagtggactat 397
Query: 269 cacggatgtgatttctttccagaacgttggtttga 303
|| || ||||||||||||||||| || ||||||||
Sbjct: 398 catggttgtgatttctttccagagcgatggtttga 432
Score = 38.2 bits (19), Expect = 0.43
Identities = 28/31 (90%)
Strand = Plus / Plus
Query: 384 ccaacaacatagagtgcgaaatcttccaagt 414
|||||||||| || || ||||||||||||||
Sbjct: 513 ccaacaacatggaatgtgaaatcttccaagt 543
>gb|DT498496.1|DT498496 WS0115.BR_I11 PT-P-FL-A-2 Populus trichocarpa cDNA clone WS0115_I11
5', mRNA sequence
Length = 655
Score = 46.1 bits (23), Expect = 0.002
Identities = 77/95 (81%)
Strand = Plus / Plus
Query: 209 gacctggtgtgcgacgagcttgaggacatgatggaagaaggtggtatactagtagattac 268
||||||||||| || || || || || || |||||||||||||| | |||| || ||
Sbjct: 316 gacctggtgtgtgatgaactcgaagatataatggaagaaggtggaaacatagtggactat 375
Query: 269 cacggatgtgatttctttccagaacgttggtttga 303
|| || ||||||||||||||||| || ||||||||
Sbjct: 376 catggttgtgatttctttccagagcgatggtttga 410
Score = 38.2 bits (19), Expect = 0.43
Identities = 28/31 (90%)
Strand = Plus / Plus
Query: 384 ccaacaacatagagtgcgaaatcttccaagt 414
|||||||||| || || ||||||||||||||
Sbjct: 491 ccaacaacatggaatgtgaaatcttccaagt 521
>gb|DT498758.1|DT498758 WS0116.BR_E11 PT-P-FL-A-2 Populus trichocarpa cDNA clone WS0116_E11
5', mRNA sequence
Length = 654
Score = 46.1 bits (23), Expect = 0.002
Identities = 77/95 (81%)
Strand = Plus / Plus
Query: 209 gacctggtgtgcgacgagcttgaggacatgatggaagaaggtggtatactagtagattac 268
||||||||||| || || || || || || |||||||||||||| | |||| || ||
Sbjct: 366 gacctggtgtgtgatgaactcgaagatataatggaagaaggtggaaacatagtggactat 425
Query: 269 cacggatgtgatttctttccagaacgttggtttga 303
|| || ||||||||||||||||| || ||||||||
Sbjct: 426 catggttgtgatttctttccagagcgatggtttga 460
Score = 38.2 bits (19), Expect = 0.43
Identities = 28/31 (90%)
Strand = Plus / Plus
Query: 384 ccaacaacatagagtgcgaaatcttccaagt 414
|||||||||| || || ||||||||||||||
Sbjct: 541 ccaacaacatggaatgtgaaatcttccaagt 571
>gb|DT499496.1|DT499496 WS0118.BR_H15 PT-P-FL-A-2 Populus trichocarpa cDNA clone WS0118_H15
5', mRNA sequence
Length = 657
Score = 46.1 bits (23), Expect = 0.002
Identities = 77/95 (81%)
Strand = Plus / Plus
Query: 209 gacctggtgtgcgacgagcttgaggacatgatggaagaaggtggtatactagtagattac 268
||||||||||| || || || || || || |||||||||||||| | |||| || ||
Sbjct: 327 gacctggtgtgtgatgaactcgaagatataatggaagaaggtggaaacatagtggactat 386
Query: 269 cacggatgtgatttctttccagaacgttggtttga 303
|| || ||||||||||||||||| || ||||||||
Sbjct: 387 catggttgtgatttctttccagagcgatggtttga 421
Score = 38.2 bits (19), Expect = 0.43
Identities = 28/31 (90%)
Strand = Plus / Plus
Query: 384 ccaacaacatagagtgcgaaatcttccaagt 414
|||||||||| || || ||||||||||||||
Sbjct: 502 ccaacaacatggaatgtgaaatcttccaagt 532
>gb|DT518003.1|DT518003 WS02435.B21_O19 PTxD-ICC-N-A-14 Populus trichocarpa x Populus
deltoides cDNA clone WS02435_O19 3', mRNA sequence
Length = 959
Score = 46.1 bits (23), Expect = 0.002
Identities = 77/95 (81%)
Strand = Plus / Minus
Query: 209 gacctggtgtgcgacgagcttgaggacatgatggaagaaggtggtatactagtagattac 268
||||||||||| || || || || || || |||||||||||||| | |||| || ||
Sbjct: 497 gacctggtgtgtgatgaactcgaagatataatggaagaaggtggaaacatagtggactat 438
Query: 269 cacggatgtgatttctttccagaacgttggtttga 303
|| || ||||||||||||||||| || ||||||||
Sbjct: 437 catggttgtgatttctttccagagcgatggtttga 403
Score = 38.2 bits (19), Expect = 0.43
Identities = 28/31 (90%)
Strand = Plus / Minus
Query: 384 ccaacaacatagagtgcgaaatcttccaagt 414
|||||||||| || || ||||||||||||||
Sbjct: 322 ccaacaacatggaatgtgaaatcttccaagt 292
>gb|BU869309.1|BU869309 M128F04 Populus flower cDNA library Populus trichocarpa cDNA 5
prime, mRNA sequence
Length = 676
Score = 42.1 bits (21), Expect = 0.027
Identities = 54/65 (83%)
Strand = Plus / Plus
Query: 239 atggaagaaggtggtatactagtagattaccacggatgtgatttctttccagaacgttgg 298
|||||||||||||| | |||| || || || || ||||||||||||||||| || |||
Sbjct: 357 atggaagaaggtggaaacatagtggactatcatggttgtgatttctttccagagcgatgg 416
Query: 299 tttga 303
|||||
Sbjct: 417 tttga 421
Score = 38.2 bits (19), Expect = 0.43
Identities = 28/31 (90%)
Strand = Plus / Plus
Query: 384 ccaacaacatagagtgcgaaatcttccaagt 414
|||||||||| || || ||||||||||||||
Sbjct: 502 ccaacaacatggaatgtgaaatcttccaagt 532
>gb|BU894702.1|BU894702 X013E05 Populus wood cDNA library Populus tremula x Populus
tremuloides cDNA 5 prime, mRNA sequence
Length = 536
Score = 42.1 bits (21), Expect = 0.027
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 275 tgtgatttctttccagaacgttggtttga 303
||||||||||||||||| || ||||||||
Sbjct: 140 tgtgatttctttccagagcgatggtttga 168
Score = 38.2 bits (19), Expect = 0.43
Identities = 28/31 (90%)
Strand = Plus / Plus
Query: 384 ccaacaacatagagtgcgaaatcttccaagt 414
|||||||||| || || ||||||||||||||
Sbjct: 249 ccaacaacatggaatgtgaaatcttccaagt 279
>gb|CA928747.1|CA928747 MTU6TR.P6.D03 Aspen root cDNA Library Populus tremuloides cDNA,
mRNA sequence
Length = 487
Score = 42.1 bits (21), Expect = 0.027
Identities = 27/29 (93%)
Strand = Plus / Minus
Query: 275 tgtgatttctttccagaacgttggtttga 303
||||||||||||||||| || ||||||||
Sbjct: 65 tgtgatttctttccagagcgatggtttga 37
>gb|CA932459.1|CA932459 MTU5CS.P13.C04 Aspen stem cDNA Library Populus tremuloides cDNA,
mRNA sequence
Length = 426
Score = 42.1 bits (21), Expect = 0.027
Identities = 54/65 (83%)
Strand = Plus / Minus
Query: 239 atggaagaaggtggtatactagtagattaccacggatgtgatttctttccagaacgttgg 298
|||||||||||||| | |||| || || || || ||||||||||||||||| || |||
Sbjct: 101 atggaagaaggtggaaacatagtggactatcatggttgtgatttctttccagagcgatgg 42
Query: 299 tttga 303
|||||
Sbjct: 41 tttga 37
>gb|CV239227.1|CV239227 WS0231.B21_L17 PT-MB-A-13 Populus trichocarpa cDNA clone WS0231_L17
3', mRNA sequence
Length = 779
Score = 42.1 bits (21), Expect = 0.027
Identities = 54/65 (83%)
Strand = Plus / Minus
Query: 239 atggaagaaggtggtatactagtagattaccacggatgtgatttctttccagaacgttgg 298
|||||||||||||| | |||| || || || || ||||||||||||||||| || |||
Sbjct: 518 atggaagaaggtggaaacatagtggactatcatggttgtgatttctttccagagcgatgg 459
Query: 299 tttga 303
|||||
Sbjct: 458 tttga 454
Score = 38.2 bits (19), Expect = 0.43
Identities = 28/31 (90%)
Strand = Plus / Minus
Query: 384 ccaacaacatagagtgcgaaatcttccaagt 414
|||||||||| || || ||||||||||||||
Sbjct: 373 ccaacaacatggaatgtgaaatcttccaagt 343
>gb|CV241685.1|CV241685 WS02512.B21_P08 PT-MB-N-A-15 Populus trichocarpa cDNA clone
WS02512_P08 3', mRNA sequence
Length = 735
Score = 42.1 bits (21), Expect = 0.027
Identities = 54/65 (83%)
Strand = Plus / Minus
Query: 239 atggaagaaggtggtatactagtagattaccacggatgtgatttctttccagaacgttgg 298
|||||||||||||| | |||| || || || || ||||||||||||||||| || |||
Sbjct: 514 atggaagaaggtggaaacatagtggactatcatggttgtgatttctttccagagcgatgg 455
Query: 299 tttga 303
|||||
Sbjct: 454 tttga 450
Score = 38.2 bits (19), Expect = 0.43
Identities = 28/31 (90%)
Strand = Plus / Minus
Query: 384 ccaacaacatagagtgcgaaatcttccaagt 414
|||||||||| || || ||||||||||||||
Sbjct: 369 ccaacaacatggaatgtgaaatcttccaagt 339
>gb|DT477849.1|DT477849 WS02521.BR_C16 PT-MB-N-A-15 Populus trichocarpa cDNA clone
WS02521_C16 5', mRNA sequence
Length = 848
Score = 42.1 bits (21), Expect = 0.027
Identities = 54/65 (83%)
Strand = Plus / Plus
Query: 239 atggaagaaggtggtatactagtagattaccacggatgtgatttctttccagaacgttgg 298
|||||||||||||| | |||| || || || || ||||||||||||||||| || |||
Sbjct: 433 atggaagaaggtggaaacatagtggactatcatggttgtgatttctttccagagcgatgg 492
Query: 299 tttga 303
|||||
Sbjct: 493 tttga 497
Score = 38.2 bits (19), Expect = 0.43
Identities = 28/31 (90%)
Strand = Plus / Plus
Query: 384 ccaacaacatagagtgcgaaatcttccaagt 414
|||||||||| || || ||||||||||||||
Sbjct: 578 ccaacaacatggaatgtgaaatcttccaagt 608
>gb|DT479239.1|DT479239 WS02525.BR_C23 PT-MB-N-A-15 Populus trichocarpa cDNA clone
WS02525_C23 5', mRNA sequence
Length = 826
Score = 42.1 bits (21), Expect = 0.027
Identities = 54/65 (83%)
Strand = Plus / Plus
Query: 239 atggaagaaggtggtatactagtagattaccacggatgtgatttctttccagaacgttgg 298
|||||||||||||| | |||| || || || || ||||||||||||||||| || |||
Sbjct: 315 atggaagaaggtggaaacatagtggactatcatggttgtgatttctttccagagcgatgg 374
Query: 299 tttga 303
|||||
Sbjct: 375 tttga 379
Score = 38.2 bits (19), Expect = 0.43
Identities = 28/31 (90%)
Strand = Plus / Plus
Query: 384 ccaacaacatagagtgcgaaatcttccaagt 414
|||||||||| || || ||||||||||||||
Sbjct: 460 ccaacaacatggaatgtgaaatcttccaagt 490
>gb|DT482925.1|DT482925 WS02521.B21_C16 PT-MB-N-A-15 Populus trichocarpa cDNA clone
WS02521_C16 3', mRNA sequence
Length = 831
Score = 42.1 bits (21), Expect = 0.027
Identities = 54/65 (83%)
Strand = Plus / Minus
Query: 239 atggaagaaggtggtatactagtagattaccacggatgtgatttctttccagaacgttgg 298
|||||||||||||| | |||| || || || || ||||||||||||||||| || |||
Sbjct: 533 atggaagaaggtggaaacatagtggactatcatggttgtgatttctttccagagcgatgg 474
Query: 299 tttga 303
|||||
Sbjct: 473 tttga 469
Score = 38.2 bits (19), Expect = 0.43
Identities = 28/31 (90%)
Strand = Plus / Minus
Query: 384 ccaacaacatagagtgcgaaatcttccaagt 414
|||||||||| || || ||||||||||||||
Sbjct: 388 ccaacaacatggaatgtgaaatcttccaagt 358
>gb|DT484355.1|DT484355 WS02525.B21_C23 PT-MB-N-A-15 Populus trichocarpa cDNA clone
WS02525_C23 3', mRNA sequence
Length = 828
Score = 42.1 bits (21), Expect = 0.027
Identities = 54/65 (83%)
Strand = Plus / Minus
Query: 239 atggaagaaggtggtatactagtagattaccacggatgtgatttctttccagaacgttgg 298
|||||||||||||| | |||| || || || || ||||||||||||||||| || |||
Sbjct: 514 atggaagaaggtggaaacatagtggactatcatggttgtgatttctttccagagcgatgg 455
Query: 299 tttga 303
|||||
Sbjct: 454 tttga 450
Score = 38.2 bits (19), Expect = 0.43
Identities = 28/31 (90%)
Strand = Plus / Minus
Query: 384 ccaacaacatagagtgcgaaatcttccaagt 414
|||||||||| || || ||||||||||||||
Sbjct: 369 ccaacaacatggaatgtgaaatcttccaagt 339
>gb|DT488984.1|DT488984 WS02537.B21_P19 PT-MB-N-A-15 Populus trichocarpa cDNA clone
WS02537_P19 3', mRNA sequence
Length = 835
Score = 42.1 bits (21), Expect = 0.027
Identities = 54/65 (83%)
Strand = Plus / Minus
Query: 239 atggaagaaggtggtatactagtagattaccacggatgtgatttctttccagaacgttgg 298
|||||||||||||| | |||| || || || || ||||||||||||||||| || |||
Sbjct: 533 atggaagaaggtggaaacatagtggactatcatggttgtgatttctttccagagcgatgg 474
Query: 299 tttga 303
|||||
Sbjct: 473 tttga 469
Score = 38.2 bits (19), Expect = 0.43
Identities = 28/31 (90%)
Strand = Plus / Minus
Query: 384 ccaacaacatagagtgcgaaatcttccaagt 414
|||||||||| || || ||||||||||||||
Sbjct: 388 ccaacaacatggaatgtgaaatcttccaagt 358
>gb|CN550028.1|CN550028 GQ0242.B3_B18 GQ024 Populus trichocarpa x Populus deltoides cDNA
clone GQ0242_B18 5', mRNA sequence
Length = 404
Score = 38.2 bits (19), Expect = 0.43
Identities = 28/31 (90%)
Strand = Plus / Plus
Query: 384 ccaacaacatagagtgcgaaatcttccaagt 414
|||||||||| || || ||||||||||||||
Sbjct: 40 ccaacaacatggaatgtgaaatcttccaagt 70
>gb|CV251879.1|CV251879 WS0118.B21_H15 PT-P-FL-A-2 Populus trichocarpa cDNA clone
WS0118_H15 3', mRNA sequence
Length = 627
Score = 38.2 bits (19), Expect = 0.43
Identities = 28/31 (90%)
Strand = Plus / Minus
Query: 384 ccaacaacatagagtgcgaaatcttccaagt 414
|||||||||| || || ||||||||||||||
Sbjct: 385 ccaacaacatggaatgtgaaatcttccaagt 355
>gb|CV264568.1|CV264568 WS02024.B21_N23 PTxN-IB-N-A-11 Populus trichocarpa x Populus nigra
cDNA clone WS02024_N23 3', mRNA sequence
Length = 425
Score = 38.2 bits (19), Expect = 0.43
Identities = 28/31 (90%)
Strand = Plus / Minus
Query: 384 ccaacaacatagagtgcgaaatcttccaagt 414
|||||||||| || || ||||||||||||||
Sbjct: 388 ccaacaacatggaatgtgaaatcttccaagt 358
Database: Populus_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:49 PM
Number of letters in database: 203,408,664
Number of sequences in database: 369,679
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 58,298
Number of Sequences: 369679
Number of extensions: 58298
Number of successful extensions: 18190
Number of sequences better than 0.5: 30
Number of HSP's better than 0.5 without gapping: 30
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 18107
Number of HSP's gapped (non-prelim): 67
length of query: 687
length of database: 203,408,664
effective HSP length: 19
effective length of query: 668
effective length of database: 196,384,763
effective search space: 131185021684
effective search space used: 131185021684
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)