BLASTN 2.2.10 [Oct-19-2004]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 2943885.2.1
         (581 letters)

Database: Populus_nucl_with_EST.fasta 
           369,679 sequences; 203,408,664 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|DN484900.1|DN484900  K034P84.3pR Populus apical shoot cDN...    40   0.091
gb|CV280244.1|CV280244  WS0135.B21_I02 PTxD-IL-FL-A-4 Populu...    38   0.36 
gb|DN491046.1|DN491046  UM56TC12.3pR Populus female catkins ...    38   0.36 
gb|DT517193.1|DT517193  WS02433.B21_J11 PTxD-ICC-N-A-14 Popu...    38   0.36 

>gb|DN484900.1|DN484900 K034P84.3pR Populus apical shoot cDNA library Populus tremula x
           Populus tremuloides cDNA clone K034P84 3', mRNA sequence
          Length = 251

 Score = 40.1 bits (20), Expect = 0.091
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                       
Query: 446 gaaggaggaagctctgacaagaacattg 473
           ||||| |||||||| |||||||||||||
Sbjct: 168 gaaggtggaagctccgacaagaacattg 141



>gb|CV280244.1|CV280244 WS0135.B21_I02 PTxD-IL-FL-A-4 Populus trichocarpa x Populus
           deltoides cDNA clone WS0135_I02 3', mRNA sequence
          Length = 556

 Score = 38.2 bits (19), Expect = 0.36
 Identities = 31/35 (88%)
 Strand = Plus / Plus

                                              
Query: 236 ccaatggtggcgatgccccagtgggcggaccagcc 270
           ||||||||||| ||||| |||||| | ||||||||
Sbjct: 432 ccaatggtggcaatgccacagtggactgaccagcc 466



>gb|DN491046.1|DN491046 UM56TC12.3pR Populus female catkins cDNA library Populus
           trichocarpa cDNA clone UM56TC12 3', mRNA sequence
          Length = 726

 Score = 38.2 bits (19), Expect = 0.36
 Identities = 31/35 (88%)
 Strand = Plus / Minus

                                              
Query: 236 ccaatggtggcgatgccccagtgggcggaccagcc 270
           ||||||||||| ||||| |||||| | ||||||||
Sbjct: 510 ccaatggtggcaatgccacagtggactgaccagcc 476



>gb|DT517193.1|DT517193 WS02433.B21_J11 PTxD-ICC-N-A-14 Populus trichocarpa x Populus
           deltoides cDNA clone WS02433_J11 3', mRNA sequence
          Length = 853

 Score = 38.2 bits (19), Expect = 0.36
 Identities = 31/35 (88%)
 Strand = Plus / Minus

                                              
Query: 236 ccaatggtggcgatgccccagtgggcggaccagcc 270
           ||||||||||| ||||| |||||| | ||||||||
Sbjct: 569 ccaatggtggcaatgccacagtggactgaccagcc 535



  Database: Populus_nucl_with_EST.fasta
    Posted date:  Feb 7, 2006  2:49 PM
  Number of letters in database: 203,408,664
  Number of sequences in database:  369,679
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 57,513
Number of Sequences: 369679
Number of extensions: 57513
Number of successful extensions: 16942
Number of sequences better than  0.5: 4
Number of HSP's better than  0.5 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 16932
Number of HSP's gapped (non-prelim): 10
length of query: 581
length of database: 203,408,664
effective HSP length: 19
effective length of query: 562
effective length of database: 196,384,763
effective search space: 110368236806
effective search space used: 110368236806
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)