BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2943819.2.1
(1121 letters)
Database: Populus_nucl_with_EST.fasta
369,679 sequences; 203,408,664 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CX657100.1|CX657100 PO02060B05 Poplar SC cDNA library Po... 58 8e-007
gb|AJ771501.1|AJ771501 AJ771501 Populus euphratica root 3-6... 52 5e-005
gb|CN193407.1|CN193407 PtdH925 hybrid poplar systemically w... 50 2e-004
gb|CN193408.1|CN193408 PtdH926A hybrid poplar systemically ... 50 2e-004
gb|CX172476.1|CX172476 C01_69-60_05.ab1 leaf inoculated wit... 50 2e-004
gb|DT478714.1|DT478714 WS02523.BR_J10 PT-MB-N-A-15 Populus ... 50 2e-004
gb|AY129246.1| Populus x canescens putative MYB transcripti... 50 2e-004
gb|BU827658.1|BU827658 K006P59P Populus apical shoot cDNA l... 48 7e-004
gb|CF234626.1|CF234626 PtaJXT0013B5B0503 Poplar cDNA librar... 48 7e-004
gb|CV277711.1|CV277711 WS0144.B21_F14 PTxD-IL-A-5 Populus t... 48 7e-004
gb|CV283778.1|CV283778 WS0188.B21_E04 PTxD-IL-N-A-9 Populus... 48 7e-004
gb|BU881923.1|BU881923 UM69TD03 Populus flower cDNA library... 46 0.003
gb|CN192837.1|CN192837 PtdH1735 hybrid poplar systemically ... 46 0.003
gb|BI130753.1|BI130753 G110P33Y Populus cambium cDNA librar... 44 0.011
gb|BI130805.1|BI130805 G111P06Y Populus cambium cDNA librar... 44 0.011
gb|BI131512.1|BI131512 G121P91Y Populus cambium cDNA librar... 44 0.011
gb|BU812564.1|BU812564 UL97TH03 Populus leaf cDNA library P... 44 0.011
gb|BU827551.1|BU827551 K004P72P Populus apical shoot cDNA l... 44 0.011
gb|BU828843.1|BU828843 K029P74P Populus apical shoot cDNA l... 44 0.011
gb|BU837990.1|BU837990 T108C04 Populus apical shoot cDNA li... 44 0.011
gb|BU884952.1|BU884952 R018E05 Populus root cDNA library Po... 44 0.011
gb|BU891795.1|BU891795 P055C08 Populus petioles cDNA librar... 44 0.011
gb|BU895269.1|BU895269 X021F05 Populus wood cDNA library Po... 44 0.011
gb|CA930291.1|CA930291 MTU2CA.P9.F12 Aspen apex cDNA Librar... 44 0.011
gb|CN520600.1|CN520600 GQ0106.B3_F23 GQ010 Populus trichoca... 44 0.011
gb|CN522824.1|CN522824 GQ0122.B3_B22 GQ012 Populus trichoca... 44 0.011
gb|DN496300.1|DN496300 P055C08.5pR Populus petioles cDNA li... 44 0.011
gb|DN500008.1|DN500008 T108C04.5pR Populus shoot meristem c... 44 0.011
gb|DV464188.1|DV464188 MTUNUL1.P24.C03 NUL Populus fremonti... 44 0.011
emb|AJ567346.1|POP567346 Populus tremula x Populus tremuloi... 44 0.011
gb|BU868208.1|BU868208 M112E10 Populus flower cDNA library ... 42 0.045
gb|CV251506.1|CV251506 WS0117.B21_E11 PT-P-FL-A-2 Populus t... 42 0.045
gb|DT490198.1|DT490198 WS02544.B21_E22 PT-MB-N-A-15 Populus... 42 0.045
gb|DT525716.1|DT525716 WS02046.C21_B16 PTxN-IB-N-A-11 Popul... 42 0.045
gb|BU828641.1|BU828641 K026P22P Populus apical shoot cDNA l... 40 0.18
gb|CF232658.1|CF232658 PtaJXO0014B3B0303 Poplar cDNA librar... 40 0.18
gb|CV225456.1|CV225456 WS0161.B21_H07 PT-DX-A-7 Populus tri... 40 0.18
gb|CV245142.1|CV245142 WS0256.B21_J13 PT-MB-N-A-15 Populus ... 40 0.18
gb|CV250900.1|CV250900 WS0115.B21_C24 PT-P-FL-A-2 Populus t... 40 0.18
gb|CV261035.1|CV261035 WS02015.B21_K21 PTxN-IB-N-A-11 Popul... 40 0.18
gb|CV263015.1|CV263015 WS02020.B21_B23 PTxN-IB-N-A-11 Popul... 40 0.18
gb|CV267940.1|CV267940 WS0204.B21_B22 PTxN-IB-N-A-11 Populu... 40 0.18
gb|CX174231.1|CX174231 B01_69-71_03.ab1 leaf inoculated wit... 40 0.18
gb|DN494318.1|DN494318 K026P22.5pR Populus apical shoot cDN... 40 0.18
gb|DT521273.1|DT521273 WS02033.B21_N15 PTxN-IB-N-A-11 Popul... 40 0.18
gb|DT523686.1|DT523686 WS02040.B21_F21 PTxN-IB-N-A-11 Popul... 40 0.18
>gb|CX657100.1|CX657100 PO02060B05 Poplar SC cDNA library Populus alba x Populus tremula
var. glandulosa cDNA clone PO02060B05 5', mRNA sequence
Length = 673
Score = 58.0 bits (29), Expect = 8e-007
Identities = 29/29 (100%)
Strand = Plus / Minus
Query: 795 gtgttccagtagttcttgatctcgttgtc 823
|||||||||||||||||||||||||||||
Sbjct: 345 gtgttccagtagttcttgatctcgttgtc 317
>gb|AJ771501.1|AJ771501 AJ771501 Populus euphratica root 3-6 months Populus euphratica cDNA
clone P0001600002A05F1, mRNA sequence
Length = 588
Score = 52.0 bits (26), Expect = 5e-005
Identities = 35/38 (92%)
Strand = Plus / Minus
Query: 795 gtgttccagtagttcttgatctcgttgtccgtccgccc 832
|||||||||||||||||||| || |||||||| |||||
Sbjct: 336 gtgttccagtagttcttgatttcattgtccgttcgccc 299
>gb|CN193407.1|CN193407 PtdH925 hybrid poplar systemically wound-induced leaf cDNA library
Populus trichocarpa x Populus deltoides cDNA 5, mRNA
sequence
Length = 341
Score = 50.1 bits (25), Expect = 2e-004
Identities = 64/77 (83%)
Strand = Plus / Minus
Query: 1011 cgccagcacccttcgccgtgcgcgcggatgtaggccaccaggcgctcgtcctcctccttg 1070
|||||||| ||||| ||||| || | ||||| || || ||||| ||||| |||||||||
Sbjct: 119 cgccagcaaccttcaccgtgagctctaatgtaagcaacaaggcgatcgtcttcctccttg 60
Query: 1071 gtccacgcgcccctgtt 1087
|||||||| ||| ||||
Sbjct: 59 gtccacgcacccttgtt 43
>gb|CN193408.1|CN193408 PtdH926A hybrid poplar systemically wound-induced leaf cDNA library
Populus trichocarpa x Populus deltoides cDNA 5, mRNA
sequence
Length = 397
Score = 50.1 bits (25), Expect = 2e-004
Identities = 64/77 (83%)
Strand = Plus / Minus
Query: 1011 cgccagcacccttcgccgtgcgcgcggatgtaggccaccaggcgctcgtcctcctccttg 1070
|||||||| ||||| ||||| || | ||||| || || ||||| ||||| |||||||||
Sbjct: 164 cgccagcaaccttcaccgtgagctctaatgtaagcaacaaggcgatcgtcttcctccttg 105
Query: 1071 gtccacgcgcccctgtt 1087
|||||||| ||| ||||
Sbjct: 104 gtccacgcacccttgtt 88
>gb|CX172476.1|CX172476 C01_69-60_05.ab1 leaf inoculated with Marssonia pathogen of Populus
deltoides Populus deltoides cDNA, mRNA sequence
Length = 601
Score = 50.1 bits (25), Expect = 2e-004
Identities = 64/77 (83%)
Strand = Plus / Minus
Query: 1011 cgccagcacccttcgccgtgcgcgcggatgtaggccaccaggcgctcgtcctcctccttg 1070
|||||||| ||||| ||||| || | ||||| || || ||||| ||||| |||||||||
Sbjct: 243 cgccagcaaccttcaccgtgagctctaatgtaagcaacaaggcgatcgtcttcctccttg 184
Query: 1071 gtccacgcgcccctgtt 1087
|||||||| ||| ||||
Sbjct: 183 gtccacgcacccttgtt 167
>gb|DT478714.1|DT478714 WS02523.BR_J10 PT-MB-N-A-15 Populus trichocarpa cDNA clone
WS02523_J10 5', mRNA sequence
Length = 838
Score = 50.1 bits (25), Expect = 2e-004
Identities = 64/77 (83%)
Strand = Plus / Plus
Query: 1011 cgccagcacccttcgccgtgcgcgcggatgtaggccaccaggcgctcgtcctcctccttg 1070
|||||||| ||||| ||||| || | ||||| || || ||||| ||||| |||||||||
Sbjct: 443 cgccagcaaccttcaccgtgagctctaatgtaagcaacaaggcgatcgtcttcctccttg 502
Query: 1071 gtccacgcgcccctgtt 1087
|||||||| ||| ||||
Sbjct: 503 gtccacgcacccttgtt 519
>gb|AY129246.1| Populus x canescens putative MYB transcription factor (MYB) mRNA,
complete cds
Length = 1367
Score = 50.1 bits (25), Expect = 2e-004
Identities = 28/29 (96%)
Strand = Plus / Minus
Query: 795 gtgttccagtagttcttgatctcgttgtc 823
|||||||||||||||||||| ||||||||
Sbjct: 420 gtgttccagtagttcttgatttcgttgtc 392
>gb|BU827658.1|BU827658 K006P59P Populus apical shoot cDNA library Populus tremula x
Populus tremuloides cDNA 5 prime, mRNA sequence
Length = 636
Score = 48.1 bits (24), Expect = 7e-004
Identities = 30/32 (93%)
Strand = Plus / Minus
Query: 798 ttccagtagttcttgatctcgttgtccgtccg 829
|||||||| ||||||||||| |||||||||||
Sbjct: 402 ttccagtaattcttgatctcattgtccgtccg 371
>gb|CF234626.1|CF234626 PtaJXT0013B5B0503 Poplar cDNA library from young tension xylem
Populus alba x Populus tremula cDNA 5', mRNA sequence
Length = 447
Score = 48.1 bits (24), Expect = 7e-004
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 419 gccgttgctgctgctgcagctgcacccg 446
|||| |||||||||||||||||||||||
Sbjct: 345 gccgctgctgctgctgcagctgcacccg 372
>gb|CV277711.1|CV277711 WS0144.B21_F14 PTxD-IL-A-5 Populus trichocarpa x Populus deltoides
cDNA clone WS0144_F14 3', mRNA sequence
Length = 834
Score = 48.1 bits (24), Expect = 7e-004
Identities = 30/32 (93%)
Strand = Plus / Plus
Query: 798 ttccagtagttcttgatctcgttgtccgtccg 829
|||||||| ||||||||||| |||||||||||
Sbjct: 766 ttccagtaattcttgatctcattgtccgtccg 797
>gb|CV283778.1|CV283778 WS0188.B21_E04 PTxD-IL-N-A-9 Populus trichocarpa x Populus
deltoides cDNA clone WS0188_E04 3', mRNA sequence
Length = 803
Score = 48.1 bits (24), Expect = 7e-004
Identities = 30/32 (93%)
Strand = Plus / Plus
Query: 798 ttccagtagttcttgatctcgttgtccgtccg 829
|||||||| ||||||||||| |||||||||||
Sbjct: 639 ttccagtaattcttgatctcattgtccgtccg 670
>gb|BU881923.1|BU881923 UM69TD03 Populus flower cDNA library Populus trichocarpa cDNA 5
prime, mRNA sequence
Length = 524
Score = 46.1 bits (23), Expect = 0.003
Identities = 68/83 (81%)
Strand = Plus / Minus
Query: 798 ttccagtagttcttgatctcgttgtccgtccgccccgggagccgcgcggcgatgagcgac 857
||||| ||||||||||||||||| || |||| || || |||| | | || ||||| |||
Sbjct: 284 ttccaatagttcttgatctcgttatctgtccttcctggtagcctccccgctatgagagac 225
Query: 858 cacttgttcccgaggaggctgtg 880
||||| || || |||||||||||
Sbjct: 224 cacttattaccaaggaggctgtg 202
>gb|CN192837.1|CN192837 PtdH1735 hybrid poplar systemically wound-induced leaf cDNA library
Populus trichocarpa x Populus deltoides cDNA 5, mRNA
sequence
Length = 428
Score = 46.1 bits (23), Expect = 0.003
Identities = 68/83 (81%)
Strand = Plus / Minus
Query: 798 ttccagtagttcttgatctcgttgtccgtccgccccgggagccgcgcggcgatgagcgac 857
||||| ||||||||||||||||| || |||| || || |||| | | || ||||| |||
Sbjct: 411 ttccaatagttcttgatctcgttatctgtccttcctggtagcctccccgctatgagagac 352
Query: 858 cacttgttcccgaggaggctgtg 880
||||| || || |||||||||||
Sbjct: 351 cacttattaccaaggaggctgtg 329
>gb|BI130753.1|BI130753 G110P33Y Populus cambium cDNA library Populus tremula x Populus
tremuloides cDNA, mRNA sequence
Length = 515
Score = 44.1 bits (22), Expect = 0.011
Identities = 34/38 (89%)
Strand = Plus / Minus
Query: 1050 aggcgctcgtcctcctccttggtccacgcgcccctgtt 1087
||||| ||||| ||||||||||||||||| ||| ||||
Sbjct: 186 aggcgatcgtcttcctccttggtccacgcacccttgtt 149
>gb|BI130805.1|BI130805 G111P06Y Populus cambium cDNA library Populus tremula x Populus
tremuloides cDNA, mRNA sequence
Length = 374
Score = 44.1 bits (22), Expect = 0.011
Identities = 34/38 (89%)
Strand = Plus / Minus
Query: 1050 aggcgctcgtcctcctccttggtccacgcgcccctgtt 1087
||||| ||||| ||||||||||||||||| ||| ||||
Sbjct: 197 aggcgatcgtcttcctccttggtccacgcacccttgtt 160
>gb|BI131512.1|BI131512 G121P91Y Populus cambium cDNA library Populus tremula x Populus
tremuloides cDNA, mRNA sequence
Length = 523
Score = 44.1 bits (22), Expect = 0.011
Identities = 139/178 (78%)
Strand = Plus / Minus
Query: 910 cggtgaagttgccgcgcttcaggtcgggccggaggtagttgatccaccgcagccggcagc 969
||||||| ||||| || || ||||| || || | |||||||||||| || || | ||| |
Sbjct: 296 cggtgaaattgccacgtttaaggtcaggtcgtaagtagttgatccagcgaagtctgcaac 237
Query: 970 tcttgccgcaccgcagcaggcccgccgccttgggcagcgaccgccagcacccttcgccgt 1029
||||||| || | || ||||| || || || || || || |||||||| ||||| || |
Sbjct: 236 tcttgccacatctaagaaggccagcggctttaggaagtgaacgccagcaaccttcaccat 177
Query: 1030 gcgcgcggatgtaggccaccaggcgctcgtcctcctccttggtccacgcgcccctgtt 1087
| || | ||||| || || ||||| ||||| ||||||||||||||||| ||| ||||
Sbjct: 176 gagctctaatgtaagcaacaaggcgatcgtcttcctccttggtccacgcacccttgtt 119
>gb|BU812564.1|BU812564 UL97TH03 Populus leaf cDNA library Populus tremula x Populus
tremuloides cDNA 5 prime, mRNA sequence
Length = 549
Score = 44.1 bits (22), Expect = 0.011
Identities = 34/38 (89%)
Strand = Plus / Minus
Query: 795 gtgttccagtagttcttgatctcgttgtccgtccgccc 832
|||||||||||||||||||| || ||||| || |||||
Sbjct: 367 gtgttccagtagttcttgatttcattgtctgttcgccc 330
>gb|BU827551.1|BU827551 K004P72P Populus apical shoot cDNA library Populus tremula x
Populus tremuloides cDNA 5 prime, mRNA sequence
Length = 436
Score = 44.1 bits (22), Expect = 0.011
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 795 gtgttccagtagttcttgatctcgtt 820
||||||||||| ||||||||||||||
Sbjct: 301 gtgttccagtaattcttgatctcgtt 276
>gb|BU828843.1|BU828843 K029P74P Populus apical shoot cDNA library Populus tremula x
Populus tremuloides cDNA 5 prime, mRNA sequence
Length = 344
Score = 44.1 bits (22), Expect = 0.011
Identities = 34/38 (89%)
Strand = Plus / Minus
Query: 795 gtgttccagtagttcttgatctcgttgtccgtccgccc 832
|||||||||||||||||||| || ||||| || |||||
Sbjct: 163 gtgttccagtagttcttgatttcattgtctgttcgccc 126
>gb|BU837990.1|BU837990 T108C04 Populus apical shoot cDNA library Populus tremula x Populus
tremuloides cDNA 5 prime, mRNA sequence
Length = 676
Score = 44.1 bits (22), Expect = 0.011
Identities = 34/38 (89%)
Strand = Plus / Minus
Query: 939 cggaggtagttgatccaccgcagccggcagctcttgcc 976
||||||||||| ||||| || || ||||||||||||||
Sbjct: 229 cggaggtagttcatccagcggagacggcagctcttgcc 192
>gb|BU884952.1|BU884952 R018E05 Populus root cDNA library Populus tremula x Populus
tremuloides cDNA 5 prime, mRNA sequence
Length = 675
Score = 44.1 bits (22), Expect = 0.011
Identities = 139/178 (78%)
Strand = Plus / Minus
Query: 910 cggtgaagttgccgcgcttcaggtcgggccggaggtagttgatccaccgcagccggcagc 969
||||||| ||||| || || ||||| || || | |||||||||||| || || | ||| |
Sbjct: 350 cggtgaaattgccacgtttaaggtcaggtcgtaagtagttgatccagcgaagtctgcaac 291
Query: 970 tcttgccgcaccgcagcaggcccgccgccttgggcagcgaccgccagcacccttcgccgt 1029
||||||| || | || ||||| || || || || || || |||||||| ||||| || |
Sbjct: 290 tcttgccacatccaagaaggccagcggctttaggaagtgaacgccagcaaccttcaccat 231
Query: 1030 gcgcgcggatgtaggccaccaggcgctcgtcctcctccttggtccacgcgcccctgtt 1087
| || | ||||| || || ||||| ||||| ||||||||||||||||| ||| ||||
Sbjct: 230 gagctctaatgtaagcaacaaggcgatcgtcttcctccttggtccacgcacccttgtt 173
>gb|BU891795.1|BU891795 P055C08 Populus petioles cDNA library Populus tremula cDNA 5 prime,
mRNA sequence
Length = 737
Score = 44.1 bits (22), Expect = 0.011
Identities = 34/38 (89%)
Strand = Plus / Minus
Query: 795 gtgttccagtagttcttgatctcgttgtccgtccgccc 832
|||||||||||||||||||| || ||||| || |||||
Sbjct: 368 gtgttccagtagttcttgatttcattgtctgttcgccc 331
>gb|BU895269.1|BU895269 X021F05 Populus wood cDNA library Populus tremula x Populus
tremuloides cDNA 5 prime, mRNA sequence
Length = 671
Score = 44.1 bits (22), Expect = 0.011
Identities = 139/178 (78%)
Strand = Plus / Minus
Query: 910 cggtgaagttgccgcgcttcaggtcgggccggaggtagttgatccaccgcagccggcagc 969
||||||| ||||| || || ||||| || || | |||||||||||| || || | ||| |
Sbjct: 349 cggtgaaattgccacgtttaaggtcaggtcgtaagtagttgatccagcgaagtctgcaac 290
Query: 970 tcttgccgcaccgcagcaggcccgccgccttgggcagcgaccgccagcacccttcgccgt 1029
||||||| || | || ||||| || || || || || || |||||||| ||||| || |
Sbjct: 289 tcttgccacatctaagaaggccagcggctttaggaagtgaacgccagcaaccttcaccat 230
Query: 1030 gcgcgcggatgtaggccaccaggcgctcgtcctcctccttggtccacgcgcccctgtt 1087
| || | ||||| || || ||||| ||||| ||||||||||||||||| ||| ||||
Sbjct: 229 gagctctaatgtaagcaacaaggcgatcgtcttcctccttggtccacgcacccttgtt 172
>gb|CA930291.1|CA930291 MTU2CA.P9.F12 Aspen apex cDNA Library Populus tremuloides cDNA,
mRNA sequence
Length = 522
Score = 44.1 bits (22), Expect = 0.011
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 795 gtgttccagtagttcttgatctcgtt 820
||||||||||| ||||||||||||||
Sbjct: 341 gtgttccagtaattcttgatctcgtt 316
>gb|CN520600.1|CN520600 GQ0106.B3_F23 GQ010 Populus trichocarpa x Populus deltoides cDNA
clone GQ0106_F23 5', mRNA sequence
Length = 801
Score = 44.1 bits (22), Expect = 0.011
Identities = 34/38 (89%)
Strand = Plus / Minus
Query: 939 cggaggtagttgatccaccgcagccggcagctcttgcc 976
||||||||||| ||||| || || ||||||||||||||
Sbjct: 363 cggaggtagttcatccagcggagacggcagctcttgcc 326
>gb|CN522824.1|CN522824 GQ0122.B3_B22 GQ012 Populus trichocarpa x Populus deltoides cDNA
clone GQ0122_B22 5', mRNA sequence
Length = 511
Score = 44.1 bits (22), Expect = 0.011
Identities = 34/38 (89%)
Strand = Plus / Minus
Query: 795 gtgttccagtagttcttgatctcgttgtccgtccgccc 832
|||||||||||||||||||| || ||||| || |||||
Sbjct: 63 gtgttccagtagttcttgatttcattgtctgttcgccc 26
>gb|DN496300.1|DN496300 P055C08.5pR Populus petioles cDNA library Populus tremula cDNA
clone P055C08 5', mRNA sequence
Length = 677
Score = 44.1 bits (22), Expect = 0.011
Identities = 34/38 (89%)
Strand = Plus / Minus
Query: 795 gtgttccagtagttcttgatctcgttgtccgtccgccc 832
|||||||||||||||||||| || ||||| || |||||
Sbjct: 368 gtgttccagtagttcttgatttcattgtctgttcgccc 331
>gb|DN500008.1|DN500008 T108C04.5pR Populus shoot meristem cDNA library Populus tremula x
Populus tremuloides cDNA clone T108C04 5', mRNA sequence
Length = 696
Score = 44.1 bits (22), Expect = 0.011
Identities = 34/38 (89%)
Strand = Plus / Minus
Query: 939 cggaggtagttgatccaccgcagccggcagctcttgcc 976
||||||||||| ||||| || || ||||||||||||||
Sbjct: 228 cggaggtagttcatccagcggagacggcagctcttgcc 191
>gb|DV464188.1|DV464188 MTUNUL1.P24.C03 NUL Populus fremontii x Populus angustifolia cDNA,
mRNA sequence
Length = 733
Score = 44.1 bits (22), Expect = 0.011
Identities = 34/38 (89%)
Strand = Plus / Minus
Query: 795 gtgttccagtagttcttgatctcgttgtccgtccgccc 832
|||||||||||||||||||| || ||||| || |||||
Sbjct: 387 gtgttccagtagttcttgatttcattgtctgttcgccc 350
>emb|AJ567346.1|POP567346 Populus tremula x Populus tremuloides mRNA for MYB transcription
factor R2R3 type (myb gene)
Length = 813
Score = 44.1 bits (22), Expect = 0.011
Identities = 139/178 (78%)
Strand = Plus / Minus
Query: 910 cggtgaagttgccgcgcttcaggtcgggccggaggtagttgatccaccgcagccggcagc 969
||||||| ||||| || || ||||| || || | |||||||||||| || || | ||| |
Sbjct: 214 cggtgaaattgccacgtttaaggtcaggtcgtaagtagttgatccagcgaagtctgcaac 155
Query: 970 tcttgccgcaccgcagcaggcccgccgccttgggcagcgaccgccagcacccttcgccgt 1029
||||||| || | || ||||| || || || || || || |||||||| ||||| || |
Sbjct: 154 tcttgccacatctaagaaggccagcggctttaggaagtgaacgccagcaaccttcaccat 95
Query: 1030 gcgcgcggatgtaggccaccaggcgctcgtcctcctccttggtccacgcgcccctgtt 1087
| || | ||||| || || ||||| ||||| ||||||||||||||||| ||| ||||
Sbjct: 94 gagctctaatgtaagcaacaaggcgatcgtcttcctccttggtccacgcacccttgtt 37
>gb|BU868208.1|BU868208 M112E10 Populus flower cDNA library Populus trichocarpa cDNA 5
prime, mRNA sequence
Length = 450
Score = 42.1 bits (21), Expect = 0.045
Identities = 48/57 (84%)
Strand = Plus / Minus
Query: 926 cttcaggtcgggccggaggtagttgatccaccgcagccggcagctcttgccgcaccg 982
||||| ||| ||||||||||| || |||| || || |||||||||||||| |||||
Sbjct: 187 cttcaagtcaggccggaggtaattagtccagcgaagacggcagctcttgccacaccg 131
>gb|CV251506.1|CV251506 WS0117.B21_E11 PT-P-FL-A-2 Populus trichocarpa cDNA clone
WS0117_E11 3', mRNA sequence
Length = 611
Score = 42.1 bits (21), Expect = 0.045
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 664 ctgctgctgctgcggcggcgg 684
|||||||||||||||||||||
Sbjct: 81 ctgctgctgctgcggcggcgg 61
>gb|DT490198.1|DT490198 WS02544.B21_E22 PT-MB-N-A-15 Populus trichocarpa cDNA clone
WS02544_E22 3', mRNA sequence
Length = 673
Score = 42.1 bits (21), Expect = 0.045
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 799 tccagtagttcttgatctcgttgtc 823
||||||||||||||||||| |||||
Sbjct: 594 tccagtagttcttgatctcattgtc 618
>gb|DT525716.1|DT525716 WS02046.C21_B16 PTxN-IB-N-A-11 Populus trichocarpa x Populus nigra
cDNA clone WS02046_B16 3', mRNA sequence
Length = 862
Score = 42.1 bits (21), Expect = 0.045
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 795 gtgttccagtagttcttgatctcgttgtc 823
|||||||||||||||||||| || |||||
Sbjct: 833 gtgttccagtagttcttgatttcattgtc 861
>gb|BU828641.1|BU828641 K026P22P Populus apical shoot cDNA library Populus tremula x
Populus tremuloides cDNA 5 prime, mRNA sequence
Length = 461
Score = 40.1 bits (20), Expect = 0.18
Identities = 26/28 (92%)
Strand = Plus / Minus
Query: 799 tccagtagttcttgatctcgttgtccgt 826
|||||||||| || ||||||||||||||
Sbjct: 378 tccagtagttttttatctcgttgtccgt 351
>gb|CF232658.1|CF232658 PtaJXO0014B3B0303 Poplar cDNA library from young opposite xylem
Populus alba x Populus tremula cDNA 5', mRNA sequence
Length = 593
Score = 40.1 bits (20), Expect = 0.18
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 422 gttgctgctgctgcagctgc 441
||||||||||||||||||||
Sbjct: 109 gttgctgctgctgcagctgc 90
>gb|CV225456.1|CV225456 WS0161.B21_H07 PT-DX-A-7 Populus trichocarpa cDNA clone WS0161_H07
3', mRNA sequence
Length = 569
Score = 40.1 bits (20), Expect = 0.18
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 664 ctgctgctgctgcggcggcg 683
||||||||||||||||||||
Sbjct: 81 ctgctgctgctgcggcggcg 62
>gb|CV245142.1|CV245142 WS0256.B21_J13 PT-MB-N-A-15 Populus trichocarpa cDNA clone
WS0256_J13 3', mRNA sequence
Length = 925
Score = 40.1 bits (20), Expect = 0.18
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 664 ctgctgctgctgcggcggcg 683
||||||||||||||||||||
Sbjct: 78 ctgctgctgctgcggcggcg 59
>gb|CV250900.1|CV250900 WS0115.B21_C24 PT-P-FL-A-2 Populus trichocarpa cDNA clone
WS0115_C24 3', mRNA sequence
Length = 604
Score = 40.1 bits (20), Expect = 0.18
Identities = 26/28 (92%)
Strand = Plus / Minus
Query: 419 gccgttgctgctgctgcagctgcacccg 446
|||| |||||| ||||||||||||||||
Sbjct: 296 gccgctgctgcagctgcagctgcacccg 269
>gb|CV261035.1|CV261035 WS02015.B21_K21 PTxN-IB-N-A-11 Populus trichocarpa x Populus nigra
cDNA clone WS02015_K21 3', mRNA sequence
Length = 910
Score = 40.1 bits (20), Expect = 0.18
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 664 ctgctgctgctgcggcggcg 683
||||||||||||||||||||
Sbjct: 82 ctgctgctgctgcggcggcg 63
>gb|CV263015.1|CV263015 WS02020.B21_B23 PTxN-IB-N-A-11 Populus trichocarpa x Populus nigra
cDNA clone WS02020_B23 3', mRNA sequence
Length = 487
Score = 40.1 bits (20), Expect = 0.18
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 798 ttccagtagttcttgatctc 817
||||||||||||||||||||
Sbjct: 32 ttccagtagttcttgatctc 51
>gb|CV267940.1|CV267940 WS0204.B21_B22 PTxN-IB-N-A-11 Populus trichocarpa x Populus nigra
cDNA clone WS0204_B22 3', mRNA sequence
Length = 495
Score = 40.1 bits (20), Expect = 0.18
Identities = 26/28 (92%)
Strand = Plus / Minus
Query: 419 gccgttgctgctgctgcagctgcacccg 446
|||| |||||| ||||||||||||||||
Sbjct: 285 gccgctgctgcagctgcagctgcacccg 258
>gb|CX174231.1|CX174231 B01_69-71_03.ab1 leaf inoculated with Marssonia pathogen of Populus
deltoides Populus deltoides cDNA, mRNA sequence
Length = 595
Score = 40.1 bits (20), Expect = 0.18
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 422 gttgctgctgctgcagctgc 441
||||||||||||||||||||
Sbjct: 138 gttgctgctgctgcagctgc 119
>gb|DN494318.1|DN494318 K026P22.5pR Populus apical shoot cDNA library Populus tremula x
Populus tremuloides cDNA clone K026P22 5', mRNA sequence
Length = 727
Score = 40.1 bits (20), Expect = 0.18
Identities = 26/28 (92%)
Strand = Plus / Minus
Query: 799 tccagtagttcttgatctcgttgtccgt 826
|||||||||| || ||||||||||||||
Sbjct: 439 tccagtagttttttatctcgttgtccgt 412
>gb|DT521273.1|DT521273 WS02033.B21_N15 PTxN-IB-N-A-11 Populus trichocarpa x Populus nigra
cDNA clone WS02033_N15 3', mRNA sequence
Length = 428
Score = 40.1 bits (20), Expect = 0.18
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 664 ctgctgctgctgcggcggcg 683
||||||||||||||||||||
Sbjct: 82 ctgctgctgctgcggcggcg 63
>gb|DT523686.1|DT523686 WS02040.B21_F21 PTxN-IB-N-A-11 Populus trichocarpa x Populus nigra
cDNA clone WS02040_F21 3', mRNA sequence
Length = 818
Score = 40.1 bits (20), Expect = 0.18
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 664 ctgctgctgctgcggcggcg 683
||||||||||||||||||||
Sbjct: 82 ctgctgctgctgcggcggcg 63
Database: Populus_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:49 PM
Number of letters in database: 203,408,664
Number of sequences in database: 369,679
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 127,031
Number of Sequences: 369679
Number of extensions: 127031
Number of successful extensions: 44745
Number of sequences better than 0.5: 46
Number of HSP's better than 0.5 without gapping: 44
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 44613
Number of HSP's gapped (non-prelim): 118
length of query: 1121
length of database: 203,408,664
effective HSP length: 19
effective length of query: 1102
effective length of database: 196,384,763
effective search space: 216416008826
effective search space used: 216416008826
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)