BLASTN 2.2.10 [Oct-19-2004]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 2922138.2.1
         (1095 letters)

Database: Populus_nucl_with_EST.fasta 
           369,679 sequences; 203,408,664 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|BU830071.1|BU830071  T003E09 Populus apical shoot cDNA li...    40   0.17 
gb|CF227826.1|CF227826  PtaXM0005B3B0303 Poplar cDNA library...    40   0.17 
gb|AJ774608.1|AJ774608  AJ774608 Populus euphratica shoot 3-...    40   0.17 
gb|CF936535.1|CF936535  PO3007C02 Populus tomentiglandulosa ...    40   0.17 
gb|BP932415.1|BP932415  BP932415 full-length enriched poplar...    40   0.17 
gb|DT477696.1|DT477696  WS02520.BR_L10 PT-MB-N-A-15 Populus ...    40   0.17 
gb|DT506123.1|DT506123  WS01812.C21_M01 PTxD-IL-N-A-9 Populu...    40   0.17 

>gb|BU830071.1|BU830071 T003E09 Populus apical shoot cDNA library Populus tremula x Populus
           tremuloides cDNA 5 prime, mRNA sequence
          Length = 462

 Score = 40.1 bits (20), Expect = 0.17
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 785 agctgccgtgaagagtgctgagga 808
           |||||||||||||||||| |||||
Sbjct: 283 agctgccgtgaagagtgcagagga 306



>gb|CF227826.1|CF227826 PtaXM0005B3B0303 Poplar cDNA library from mature xylem Populus alba
           x Populus tremula cDNA 5', mRNA sequence
          Length = 292

 Score = 40.1 bits (20), Expect = 0.17
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 785 agctgccgtgaagagtgctgagga 808
           |||||||||||||||||| |||||
Sbjct: 76  agctgccgtgaagagtgcagagga 99



>gb|AJ774608.1|AJ774608 AJ774608 Populus euphratica shoot 3-6 months Populus euphratica
           cDNA clone P0000300022C10F1, mRNA sequence
          Length = 581

 Score = 40.1 bits (20), Expect = 0.17
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 785 agctgccgtgaagagtgctgagga 808
           |||||||||||||||||| |||||
Sbjct: 202 agctgccgtgaagagtgcagagga 225



>gb|CF936535.1|CF936535 PO3007C02 Populus tomentiglandulosa T. Lee cDNA library Populus
           tomentiglandulosa cDNA, mRNA sequence
          Length = 528

 Score = 40.1 bits (20), Expect = 0.17
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 785 agctgccgtgaagagtgctgagga 808
           |||||||||||||||||| |||||
Sbjct: 309 agctgccgtgaagagtgcagagga 332



>gb|BP932415.1|BP932415 BP932415 full-length enriched poplar cDNA library Populus nigra
           cDNA clone PnFL1-035_O11.r 3', mRNA sequence
          Length = 640

 Score = 40.1 bits (20), Expect = 0.17
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 785 agctgccgtgaagagtgctgagga 808
           |||||||||||||||||| |||||
Sbjct: 196 agctgccgtgaagagtgcagagga 173



>gb|DT477696.1|DT477696 WS02520.BR_L10 PT-MB-N-A-15 Populus trichocarpa cDNA clone
           WS02520_L10 5', mRNA sequence
          Length = 850

 Score = 40.1 bits (20), Expect = 0.17
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 785 agctgccgtgaagagtgctgagga 808
           |||||||||||||||||| |||||
Sbjct: 171 agctgccgtgaagagtgcagagga 148



>gb|DT506123.1|DT506123 WS01812.C21_M01 PTxD-IL-N-A-9 Populus trichocarpa x Populus
           deltoides cDNA clone WS01812_M01 3', mRNA sequence
          Length = 662

 Score = 40.1 bits (20), Expect = 0.17
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 785 agctgccgtgaagagtgctgagga 808
           |||||||||||||||||| |||||
Sbjct: 458 agctgccgtgaagagtgcagagga 481



  Database: Populus_nucl_with_EST.fasta
    Posted date:  Feb 7, 2006  2:49 PM
  Number of letters in database: 203,408,664
  Number of sequences in database:  369,679
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 106,604
Number of Sequences: 369679
Number of extensions: 106604
Number of successful extensions: 28321
Number of sequences better than  0.5: 7
Number of HSP's better than  0.5 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 28312
Number of HSP's gapped (non-prelim): 9
length of query: 1095
length of database: 203,408,664
effective HSP length: 19
effective length of query: 1076
effective length of database: 196,384,763
effective search space: 211310004988
effective search space used: 211310004988
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)