BLASTN 2.2.10 [Oct-19-2004]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 2921788.2.1
         (606 letters)

Database: Populus_nucl_with_EST.fasta 
           369,679 sequences; 203,408,664 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|CK100516.1|CK100516  C040P66.5pR Populus strain T89 leave...    40   0.095
gb|CX183519.1|CX183519  B05_45-55_03.ab1 leaf inoculated wit...    38   0.38 

>gb|CK100516.1|CK100516 C040P66.5pR Populus strain T89 leaves Populus tremula x Populus
           tremuloides cDNA clone C040P66 5', mRNA sequence
          Length = 266

 Score = 40.1 bits (20), Expect = 0.095
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 553 tcaaaaaatgtttgaagaag 572
           ||||||||||||||||||||
Sbjct: 37  tcaaaaaatgtttgaagaag 56



>gb|CX183519.1|CX183519 B05_45-55_03.ab1 leaf inoculated with Marssonia pathogen of Populus
           euramericana Populus x canadensis cDNA, mRNA sequence
          Length = 660

 Score = 38.2 bits (19), Expect = 0.38
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                  
Query: 149 ggggcggcgggggaggggtgggg 171
           |||||||||| ||||||||||||
Sbjct: 128 ggggcggcggcggaggggtgggg 106



  Database: Populus_nucl_with_EST.fasta
    Posted date:  Feb 7, 2006  2:49 PM
  Number of letters in database: 203,408,664
  Number of sequences in database:  369,679
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 53,587
Number of Sequences: 369679
Number of extensions: 53587
Number of successful extensions: 13374
Number of sequences better than  0.5: 2
Number of HSP's better than  0.5 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 13372
Number of HSP's gapped (non-prelim): 2
length of query: 606
length of database: 203,408,664
effective HSP length: 19
effective length of query: 587
effective length of database: 196,384,763
effective search space: 115277855881
effective search space used: 115277855881
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)