BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2850725.2.1
(847 letters)
Database: Populus_nucl_with_EST.fasta
369,679 sequences; 203,408,664 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CK088971.1|CK088971 A082P19.3pR Hybrid aspen plasmid lib... 42 0.034
gb|CK096481.1|CK096481 UB15CPH11.3pR Populus active cambium... 42 0.034
gb|CK099728.1|CK099728 A082P19.5pR Hybrid aspen plasmid lib... 42 0.034
gb|CV234783.1|CV234783 WS01216.B21_E17 PT-GT-FL-A-3 Populus... 42 0.034
gb|CV235235.1|CV235235 WS01218.B21_E23 PT-GT-FL-A-3 Populus... 42 0.034
gb|CV280517.1|CV280517 WS0136.B21_J20 PTxD-IL-FL-A-4 Populu... 42 0.034
gb|CV280707.1|CV280707 WS0137.B21_G07 PTxD-IL-FL-A-4 Populu... 42 0.034
gb|DT476355.1|DT476355 WS01229.B21_E11 PT-GT-FL-A-3 Populus... 42 0.034
gb|DT503437.1|DT503437 WS0136.BR_J20 PTxD-IL-FL-A-4 Populus... 42 0.034
gb|DT503659.1|DT503659 WS0137.BR_G07 PTxD-IL-FL-A-4 Populus... 42 0.034
gb|DT504273.1|DT504273 WS01312.B21_L07 PTxD-IL-FL-A-4 Popul... 42 0.034
gb|DV465820.1|DV465820 MTUNUL1.P43.E12 NUL Populus fremonti... 42 0.034
emb|AJ698925.1| Populus deltoides x Populus maximowiczii pa... 42 0.034
gb|AI165359.1|AI165359 A082p19u Hybrid aspen plasmid librar... 40 0.13
gb|AJ772970.1|AJ772970 AJ772970 Populus euphratica leaf 3-6... 40 0.13
>gb|CK088971.1|CK088971 A082P19.3pR Hybrid aspen plasmid library Populus tremula x Populus
tremuloides cDNA clone A082P19 3', mRNA sequence
Length = 642
Score = 42.1 bits (21), Expect = 0.034
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 627 ttcacgcagtcctcatcactccagt 651
||||||||||| |||||||||||||
Sbjct: 435 ttcacgcagtcttcatcactccagt 459
>gb|CK096481.1|CK096481 UB15CPH11.3pR Populus active cambium cDNA library Populus tremula
cDNA clone UB15CPH11 3', mRNA sequence
Length = 882
Score = 42.1 bits (21), Expect = 0.034
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 627 ttcacgcagtcctcatcactccagt 651
||||||||||| |||||||||||||
Sbjct: 454 ttcacgcagtcttcatcactccagt 478
>gb|CK099728.1|CK099728 A082P19.5pR Hybrid aspen plasmid library Populus tremula x Populus
tremuloides cDNA clone A082P19 5', mRNA sequence
Length = 374
Score = 42.1 bits (21), Expect = 0.034
Identities = 24/25 (96%)
Strand = Plus / Minus
Query: 627 ttcacgcagtcctcatcactccagt 651
||||||||||| |||||||||||||
Sbjct: 359 ttcacgcagtcttcatcactccagt 335
>gb|CV234783.1|CV234783 WS01216.B21_E17 PT-GT-FL-A-3 Populus trichocarpa cDNA clone
WS01216_E17 3', mRNA sequence
Length = 633
Score = 42.1 bits (21), Expect = 0.034
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 627 ttcacgcagtcctcatcactccagt 651
||||||||||| |||||||||||||
Sbjct: 485 ttcacgcagtcttcatcactccagt 509
>gb|CV235235.1|CV235235 WS01218.B21_E23 PT-GT-FL-A-3 Populus trichocarpa cDNA clone
WS01218_E23 3', mRNA sequence
Length = 714
Score = 42.1 bits (21), Expect = 0.034
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 627 ttcacgcagtcctcatcactccagt 651
||||||||||| |||||||||||||
Sbjct: 485 ttcacgcagtcttcatcactccagt 509
>gb|CV280517.1|CV280517 WS0136.B21_J20 PTxD-IL-FL-A-4 Populus trichocarpa x Populus
deltoides cDNA clone WS0136_J20 3', mRNA sequence
Length = 893
Score = 42.1 bits (21), Expect = 0.034
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 627 ttcacgcagtcctcatcactccagt 651
||||||||||| |||||||||||||
Sbjct: 420 ttcacgcagtcttcatcactccagt 444
>gb|CV280707.1|CV280707 WS0137.B21_G07 PTxD-IL-FL-A-4 Populus trichocarpa x Populus
deltoides cDNA clone WS0137_G07 3', mRNA sequence
Length = 919
Score = 42.1 bits (21), Expect = 0.034
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 627 ttcacgcagtcctcatcactccagt 651
||||||||||| |||||||||||||
Sbjct: 428 ttcacgcagtcttcatcactccagt 452
>gb|DT476355.1|DT476355 WS01229.B21_E11 PT-GT-FL-A-3 Populus trichocarpa cDNA clone
WS01229_E11 3', mRNA sequence
Length = 887
Score = 42.1 bits (21), Expect = 0.034
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 627 ttcacgcagtcctcatcactccagt 651
||||||||||| |||||||||||||
Sbjct: 495 ttcacgcagtcttcatcactccagt 519
>gb|DT503437.1|DT503437 WS0136.BR_J20 PTxD-IL-FL-A-4 Populus trichocarpa x Populus
deltoides cDNA clone WS0136_J20 5', mRNA sequence
Length = 864
Score = 42.1 bits (21), Expect = 0.034
Identities = 24/25 (96%)
Strand = Plus / Minus
Query: 627 ttcacgcagtcctcatcactccagt 651
||||||||||| |||||||||||||
Sbjct: 823 ttcacgcagtcttcatcactccagt 799
>gb|DT503659.1|DT503659 WS0137.BR_G07 PTxD-IL-FL-A-4 Populus trichocarpa x Populus
deltoides cDNA clone WS0137_G07 5', mRNA sequence
Length = 905
Score = 42.1 bits (21), Expect = 0.034
Identities = 24/25 (96%)
Strand = Plus / Minus
Query: 627 ttcacgcagtcctcatcactccagt 651
||||||||||| |||||||||||||
Sbjct: 826 ttcacgcagtcttcatcactccagt 802
>gb|DT504273.1|DT504273 WS01312.B21_L07 PTxD-IL-FL-A-4 Populus trichocarpa x Populus
deltoides cDNA clone WS01312_L07 3', mRNA sequence
Length = 822
Score = 42.1 bits (21), Expect = 0.034
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 627 ttcacgcagtcctcatcactccagt 651
||||||||||| |||||||||||||
Sbjct: 449 ttcacgcagtcttcatcactccagt 473
>gb|DV465820.1|DV465820 MTUNUL1.P43.E12 NUL Populus fremontii x Populus angustifolia cDNA,
mRNA sequence
Length = 850
Score = 42.1 bits (21), Expect = 0.034
Identities = 24/25 (96%)
Strand = Plus / Minus
Query: 627 ttcacgcagtcctcatcactccagt 651
||||||||||| |||||||||||||
Sbjct: 836 ttcacgcagtcttcatcactccagt 812
>emb|AJ698925.1| Populus deltoides x Populus maximowiczii partial mRNA for putative
O-methyltransferase
Length = 453
Score = 42.1 bits (21), Expect = 0.034
Identities = 24/25 (96%)
Strand = Plus / Minus
Query: 627 ttcacgcagtcctcatcactccagt 651
||||||||||| |||||||||||||
Sbjct: 89 ttcacgcagtcttcatcactccagt 65
>gb|AI165359.1|AI165359 A082p19u Hybrid aspen plasmid library Populus tremula x Populus
tremuloides cDNA 5', mRNA sequence
Length = 324
Score = 40.1 bits (20), Expect = 0.13
Identities = 23/24 (95%)
Strand = Plus / Minus
Query: 628 tcacgcagtcctcatcactccagt 651
|||||||||| |||||||||||||
Sbjct: 289 tcacgcagtcttcatcactccagt 266
>gb|AJ772970.1|AJ772970 AJ772970 Populus euphratica leaf 3-6 months Populus euphratica cDNA
clone P0000200003B11F1, mRNA sequence
Length = 597
Score = 40.1 bits (20), Expect = 0.13
Identities = 26/28 (92%)
Strand = Plus / Minus
Query: 624 atcttcacgcagtcctcatcactccagt 651
|||||||||||||| |||||| ||||||
Sbjct: 387 atcttcacgcagtcttcatcattccagt 360
Database: Populus_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:49 PM
Number of letters in database: 203,408,664
Number of sequences in database: 369,679
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 86,495
Number of Sequences: 369679
Number of extensions: 86495
Number of successful extensions: 23474
Number of sequences better than 0.5: 15
Number of HSP's better than 0.5 without gapping: 15
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 23458
Number of HSP's gapped (non-prelim): 16
length of query: 847
length of database: 203,408,664
effective HSP length: 19
effective length of query: 828
effective length of database: 196,384,763
effective search space: 162606583764
effective search space used: 162606583764
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)