BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2763196.2.1
(2766 letters)
Database: Populus_nucl_with_EST.fasta
369,679 sequences; 203,408,664 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|BU896558.1|BU896558 X042D07 Populus wood cDNA library Po... 62 1e-007
gb|BU896624.1|BU896624 X043C12 Populus wood cDNA library Po... 62 1e-007
gb|DN492870.1|DN492870 X043C12.3pR Populus wood cDNA librar... 62 1e-007
gb|DN502882.1|DN502882 X043C12.5pR Populus wood cDNA librar... 62 1e-007
gb|BU873478.1|BU873478 Q056A03 Populus flower cDNA library ... 54 3e-005
gb|BU898315.1|BU898315 X078F12 Populus wood cDNA library Po... 54 3e-005
gb|CX180070.1|CX180070 E10_45-20_10.ab1 leaf inoculated wit... 50 5e-004
gb|BI122795.1|BI122795 I013P10P Populus leaf cDNA library P... 48 0.002
gb|CK117415.1|CK117415 B050P65 Hybrid aspen plasmid library... 48 0.002
gb|AJ770262.1|AJ770262 AJ770262 Populus euphratica leaf 3-6... 48 0.002
gb|CV256390.1|CV256390 WS0243.B21_L12 PTxD-ICC-N-A-14 Popul... 48 0.002
gb|BI126065.1|BI126065 I070P02P Populus leaf cDNA library P... 46 0.007
gb|CK095109.1|CK095109 I070P02.3pR Populus senescing leaves... 46 0.007
gb|CK097363.1|CK097363 UB48DPF07.3pR Populus active cambium... 46 0.007
gb|CV237310.1|CV237310 WS01227.B21.1_F10 PT-GT-FL-A-3 Popul... 46 0.007
gb|CV243336.1|CV243336 WS02518.B21_J09 PT-MB-N-A-15 Populus... 46 0.007
gb|BU894175.1|BU894175 X004A01 Populus wood cDNA library Po... 44 0.028
gb|AJ774674.1|AJ774674 AJ774674 Populus euphratica shoot 3-... 44 0.028
gb|DN495042.1|DN495042 N013H03.5pR Populus bark cDNA librar... 44 0.028
gb|DN502315.1|DN502315 X004A01.5pR Populus wood cDNA librar... 44 0.028
gb|DV463754.1|DV463754 MTUNUL1.P2.A07 NUL Populus fremontii... 44 0.028
gb|CK095574.1|CK095574 UA14CPG10.3pR Populus dormant cambiu... 42 0.11
gb|DN483980.1|DN483980 PSO205B06 Populus tomentiglandulosa ... 42 0.11
gb|BI068710.1|BI068710 C026P15U Populus strain T89 leaves P... 40 0.44
gb|DN497822.1|DN497822 R036C03.5pR Populus root cDNA librar... 40 0.44
gb|DT477828.1|DT477828 WS02521.BR_B18 PT-MB-N-A-15 Populus ... 40 0.44
gb|DT493082.1|DT493082 WS02553.C21_F07 PT-MB-N-A-15 Populus... 40 0.44
gb|DT509164.1|DT509164 WS02422.BR_P18 PTxD-ICC-N-A-14 Popul... 40 0.44
gb|DT513780.1|DT513780 WS02422.B21_P18 PTxD-ICC-N-A-14 Popu... 40 0.44
>gb|BU896558.1|BU896558 X042D07 Populus wood cDNA library Populus tremula x Populus
tremuloides cDNA 5 prime, mRNA sequence
Length = 766
Score = 61.9 bits (31), Expect = 1e-007
Identities = 52/59 (88%)
Strand = Plus / Minus
Query: 734 ttgccattccaaaatctgatatcttgggtttcatgtccgcgtccaggagaatgttgctg 792
|||||||||||||||||||||| || || ||||| || || ||||| ||||||||||||
Sbjct: 675 ttgccattccaaaatctgatatttttgggttcatctctgcatccagtagaatgttgctg 617
>gb|BU896624.1|BU896624 X043C12 Populus wood cDNA library Populus tremula x Populus
tremuloides cDNA 5 prime, mRNA sequence
Length = 715
Score = 61.9 bits (31), Expect = 1e-007
Identities = 61/71 (85%)
Strand = Plus / Minus
Query: 721 cctccaaacatccttgccattccaaaatctgatatcttgggtttcatgtccgcgtccagg 780
|||||||| || |||||||||| ||||||||||| ||||| ||||| || || |||||
Sbjct: 181 cctccaaatatttttgccattccgaaatctgatattttggggttcatctctgcatccagt 122
Query: 781 agaatgttgct 791
|||||||||||
Sbjct: 121 agaatgttgct 111
>gb|DN492870.1|DN492870 X043C12.3pR Populus wood cDNA library Populus tremula x Populus
tremuloides cDNA clone X043C12 3', mRNA sequence
Length = 807
Score = 61.9 bits (31), Expect = 1e-007
Identities = 61/71 (85%)
Strand = Plus / Plus
Query: 721 cctccaaacatccttgccattccaaaatctgatatcttgggtttcatgtccgcgtccagg 780
|||||||| || |||||||||| ||||||||||| ||||| ||||| || || |||||
Sbjct: 672 cctccaaatatttttgccattccgaaatctgatattttggggttcatctctgcatccagt 731
Query: 781 agaatgttgct 791
|||||||||||
Sbjct: 732 agaatgttgct 742
>gb|DN502882.1|DN502882 X043C12.5pR Populus wood cDNA library Populus tremula x Populus
tremuloides cDNA clone X043C12 5', mRNA sequence
Length = 706
Score = 61.9 bits (31), Expect = 1e-007
Identities = 61/71 (85%)
Strand = Plus / Minus
Query: 721 cctccaaacatccttgccattccaaaatctgatatcttgggtttcatgtccgcgtccagg 780
|||||||| || |||||||||| ||||||||||| ||||| ||||| || || |||||
Sbjct: 180 cctccaaatatttttgccattccgaaatctgatattttggggttcatctctgcatccagt 121
Query: 781 agaatgttgct 791
|||||||||||
Sbjct: 120 agaatgttgct 110
>gb|BU873478.1|BU873478 Q056A03 Populus flower cDNA library Populus trichocarpa cDNA 5
prime, mRNA sequence
Length = 739
Score = 54.0 bits (27), Expect = 3e-005
Identities = 51/59 (86%)
Strand = Plus / Minus
Query: 734 ttgccattccaaaatctgatatcttgggtttcatgtccgcgtccaggagaatgttgctg 792
|||||||||||||||| ||||| || || ||||| || || ||||| ||||||||||||
Sbjct: 196 ttgccattccaaaatcagatatttttgggttcatctctgcatccagtagaatgttgctg 138
>gb|BU898315.1|BU898315 X078F12 Populus wood cDNA library Populus tremula x Populus
tremuloides cDNA 5 prime, mRNA sequence
Length = 552
Score = 54.0 bits (27), Expect = 3e-005
Identities = 54/63 (85%)
Strand = Plus / Minus
Query: 1045 tcattcttgaattcttcaaggccttgacctgaattcctacaaagcctcttcacagctact 1104
||||| |||||||| ||||| ||||| | ||||||| || | |||||||||||||||| |
Sbjct: 446 tcatttttgaattcatcaagtccttgtcttgaattcttagagagcctcttcacagctatt 387
Query: 1105 tct 1107
|||
Sbjct: 386 tct 384
>gb|CX180070.1|CX180070 E10_45-20_10.ab1 leaf inoculated with Marssonia pathogen of Populus
euramericana Populus x canadensis cDNA, mRNA sequence
Length = 420
Score = 50.1 bits (25), Expect = 5e-004
Identities = 67/81 (82%)
Strand = Plus / Minus
Query: 1085 aaagcctcttcacagctacttcttctcccccaggtaaagttcccatatagacaggaccaa 1144
||||||||||||| |||| ||| |||| | ||||| | ||| |||| ||||| ||||
Sbjct: 258 aaagcctcttcactgctatttccagtccctcgggtaatttgcccttataaacaggtccaa 199
Query: 1145 atcctccttctccaagcttgt 1165
||||||| |||||||||||||
Sbjct: 198 atcctccctctccaagcttgt 178
>gb|BI122795.1|BI122795 I013P10P Populus leaf cDNA library Populus tremula x Populus
tremuloides cDNA, mRNA sequence
Length = 560
Score = 48.1 bits (24), Expect = 0.002
Identities = 33/36 (91%)
Strand = Plus / Minus
Query: 736 gccattccaaaatctgatatcttgggtttcatgtcc 771
|||||||||||||| |||||||||| |||||||||
Sbjct: 132 gccattccaaaatcagatatcttggcgttcatgtcc 97
>gb|CK117415.1|CK117415 B050P65 Hybrid aspen plasmid library Populus tremula x Populus
tremuloides cDNA clone B050P65 5', mRNA sequence
Length = 281
Score = 48.1 bits (24), Expect = 0.002
Identities = 33/36 (91%)
Strand = Plus / Minus
Query: 736 gccattccaaaatctgatatcttgggtttcatgtcc 771
|||||||||||||| |||||||||| |||||||||
Sbjct: 42 gccattccaaaatcagatatcttggcgttcatgtcc 7
>gb|AJ770262.1|AJ770262 AJ770262 Populus euphratica leaf 3-6 months, adult Populus
euphratica cDNA clone P0001100009E10F1, mRNA sequence
Length = 633
Score = 48.1 bits (24), Expect = 0.002
Identities = 33/36 (91%)
Strand = Plus / Minus
Query: 736 gccattccaaaatctgatatcttgggtttcatgtcc 771
|||||||||||||| |||||||||| |||||||||
Sbjct: 56 gccattccaaaatcagatatcttggcgttcatgtcc 21
>gb|CV256390.1|CV256390 WS0243.B21_L12 PTxD-ICC-N-A-14 Populus trichocarpa x Populus
deltoides cDNA clone WS0243_L12 3', mRNA sequence
Length = 896
Score = 48.1 bits (24), Expect = 0.002
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 725 caaacatccttgccattccaaaatctga 752
|||||||||||||||||||||| |||||
Sbjct: 665 caaacatccttgccattccaaagtctga 692
>gb|BI126065.1|BI126065 I070P02P Populus leaf cDNA library Populus tremula x Populus
tremuloides cDNA, mRNA sequence
Length = 554
Score = 46.1 bits (23), Expect = 0.007
Identities = 38/43 (88%)
Strand = Plus / Minus
Query: 409 tcttgcacgcacagcaacgcaatatggatgcatctcagcacct 451
||||||||||| |||| |||| |||||||||||||||||||
Sbjct: 550 tcttgcacgcagagcagtccaatgtggatgcatctcagcacct 508
Score = 44.1 bits (22), Expect = 0.028
Identities = 34/38 (89%)
Strand = Plus / Minus
Query: 730 atccttgccattccaaaatctgatatcttgggtttcat 767
||||| ||||||||||| ||||||||||| || |||||
Sbjct: 229 atcctagccattccaaagtctgatatcttcggattcat 192
>gb|CK095109.1|CK095109 I070P02.3pR Populus senescing leaves cDNA library Populus tremula
cDNA clone I070P02 3', mRNA sequence
Length = 356
Score = 46.1 bits (23), Expect = 0.007
Identities = 38/43 (88%)
Strand = Plus / Plus
Query: 409 tcttgcacgcacagcaacgcaatatggatgcatctcagcacct 451
||||||||||| |||| |||| |||||||||||||||||||
Sbjct: 311 tcttgcacgcagagcagtccaatgtggatgcatctcagcacct 353
>gb|CK097363.1|CK097363 UB48DPF07.3pR Populus active cambium cDNA library Populus tremula
cDNA clone UB48DPF07 3', mRNA sequence
Length = 760
Score = 46.1 bits (23), Expect = 0.007
Identities = 38/43 (88%)
Strand = Plus / Plus
Query: 409 tcttgcacgcacagcaacgcaatatggatgcatctcagcacct 451
||||||||||| |||| |||| |||||||||||||||||||
Sbjct: 199 tcttgcacgcagagcagtccaatgtggatgcatctcagcacct 241
Score = 44.1 bits (22), Expect = 0.028
Identities = 34/38 (89%)
Strand = Plus / Plus
Query: 730 atccttgccattccaaaatctgatatcttgggtttcat 767
||||| ||||||||||| ||||||||||| || |||||
Sbjct: 521 atcctagccattccaaagtctgatatcttcggattcat 558
>gb|CV237310.1|CV237310 WS01227.B21.1_F10 PT-GT-FL-A-3 Populus trichocarpa cDNA clone
WS01227_F10 3', mRNA sequence
Length = 871
Score = 46.1 bits (23), Expect = 0.007
Identities = 50/59 (84%)
Strand = Plus / Plus
Query: 734 ttgccattccaaaatctgatatcttgggtttcatgtccgcgtccaggagaatgttgctg 792
|||||||||||||||||||||| || || ||||| || || || | ||||||||||||
Sbjct: 610 ttgccattccaaaatctgatatttttgggttcatatctgcatctaatagaatgttgctg 668
>gb|CV243336.1|CV243336 WS02518.B21_J09 PT-MB-N-A-15 Populus trichocarpa cDNA clone
WS02518_J09 3', mRNA sequence
Length = 876
Score = 46.1 bits (23), Expect = 0.007
Identities = 50/59 (84%)
Strand = Plus / Plus
Query: 734 ttgccattccaaaatctgatatcttgggtttcatgtccgcgtccaggagaatgttgctg 792
|||||||||| ||||||||||| || || ||||| || || |||| ||||||||||||
Sbjct: 636 ttgccattccgaaatctgatatttttgggttcatctctgcatccaatagaatgttgctg 694
>gb|BU894175.1|BU894175 X004A01 Populus wood cDNA library Populus tremula x Populus
tremuloides cDNA 5 prime, mRNA sequence
Length = 616
Score = 44.1 bits (22), Expect = 0.028
Identities = 67/82 (81%)
Strand = Plus / Minus
Query: 1085 aaagcctcttcacagctacttcttctcccccaggtaaagttcccatatagacaggaccaa 1144
|||||||||| ||||||| ||| ||||| ||||| | ||||| | ||||| | ||||
Sbjct: 258 aaagcctctttacagctatttcctctcctccaggaagctttcccttgtagacgaggccaa 199
Query: 1145 atcctccttctccaagcttgtt 1166
||||||| | ||||||||||||
Sbjct: 198 atcctccctgtccaagcttgtt 177
>gb|AJ774674.1|AJ774674 AJ774674 Populus euphratica shoot 3-6 months Populus euphratica cDNA
clone P0000300023A08F1, mRNA sequence
Length = 626
Score = 44.1 bits (22), Expect = 0.028
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 1040 tgacctcattcttgaattcttc 1061
||||||||||||||||||||||
Sbjct: 217 tgacctcattcttgaattcttc 196
>gb|DN495042.1|DN495042 N013H03.5pR Populus bark cDNA library Populus tremula x Populus
tremuloides cDNA clone N013H03 5', mRNA sequence
Length = 678
Score = 44.1 bits (22), Expect = 0.028
Identities = 34/38 (89%)
Strand = Plus / Minus
Query: 646 ccttccattgcgtattcaggagacatgtagccaaatgt 683
|||| ||||||||| || ||||||||||| ||||||||
Sbjct: 640 ccttgcattgcgtactccggagacatgtaaccaaatgt 603
>gb|DN502315.1|DN502315 X004A01.5pR Populus wood cDNA library Populus tremula x Populus
tremuloides cDNA clone X004A01 5', mRNA sequence
Length = 545
Score = 44.1 bits (22), Expect = 0.028
Identities = 67/82 (81%)
Strand = Plus / Minus
Query: 1085 aaagcctcttcacagctacttcttctcccccaggtaaagttcccatatagacaggaccaa 1144
|||||||||| ||||||| ||| ||||| ||||| | ||||| | ||||| | ||||
Sbjct: 257 aaagcctctttacagctatttcctctcctccaggaagctttcccttgtagacgaggccaa 198
Query: 1145 atcctccttctccaagcttgtt 1166
||||||| | ||||||||||||
Sbjct: 197 atcctccctgtccaagcttgtt 176
>gb|DV463754.1|DV463754 MTUNUL1.P2.A07 NUL Populus fremontii x Populus angustifolia cDNA,
mRNA sequence
Length = 739
Score = 44.1 bits (22), Expect = 0.028
Identities = 34/38 (89%)
Strand = Plus / Minus
Query: 730 atccttgccattccaaaatctgatatcttgggtttcat 767
||||| ||||||||||| ||||||||||| || |||||
Sbjct: 644 atcctagccattccaaagtctgatatcttcggattcat 607
>gb|CK095574.1|CK095574 UA14CPG10.3pR Populus dormant cambium cDNA library Populus tremula
cDNA clone UA14CPG10 3', mRNA sequence
Length = 797
Score = 42.1 bits (21), Expect = 0.11
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 732 ccttgccattccaaaatctga 752
|||||||||||||||||||||
Sbjct: 476 ccttgccattccaaaatctga 496
>gb|DN483980.1|DN483980 PSO205B06 Populus tomentiglandulosa T. Lee cDNA library Populus
tomentiglandulosa cDNA, mRNA sequence
Length = 605
Score = 42.1 bits (21), Expect = 0.11
Identities = 27/29 (93%)
Strand = Plus / Minus
Query: 931 tctagacttttgttaggcatgtactcata 959
|||||||||||||| |||||||| |||||
Sbjct: 347 tctagacttttgttgggcatgtattcata 319
>gb|BI068710.1|BI068710 C026P15U Populus strain T89 leaves Populus tremula x Populus
tremuloides cDNA, mRNA sequence
Length = 352
Score = 40.1 bits (20), Expect = 0.44
Identities = 23/24 (95%)
Strand = Plus / Minus
Query: 1142 caaatcctccttctccaagcttgt 1165
|||||||||| |||||||||||||
Sbjct: 239 caaatcctccctctccaagcttgt 216
>gb|DN497822.1|DN497822 R036C03.5pR Populus root cDNA library Populus tremula x Populus
tremuloides cDNA clone R036C03 5', mRNA sequence
Length = 667
Score = 40.1 bits (20), Expect = 0.44
Identities = 23/24 (95%)
Strand = Plus / Minus
Query: 1085 aaagcctcttcacagctacttctt 1108
|||||||||||||||||| |||||
Sbjct: 68 aaagcctcttcacagctatttctt 45
>gb|DT477828.1|DT477828 WS02521.BR_B18 PT-MB-N-A-15 Populus trichocarpa cDNA clone
WS02521_B18 5', mRNA sequence
Length = 742
Score = 40.1 bits (20), Expect = 0.44
Identities = 26/28 (92%)
Strand = Plus / Minus
Query: 734 ttgccattccaaaatctgatatcttggg 761
|||||| ||||||||||||||| |||||
Sbjct: 186 ttgccaatccaaaatctgatattttggg 159
>gb|DT493082.1|DT493082 WS02553.C21_F07 PT-MB-N-A-15 Populus trichocarpa cDNA clone
WS02553_F07 3', mRNA sequence
Length = 818
Score = 40.1 bits (20), Expect = 0.44
Identities = 29/32 (90%)
Strand = Plus / Plus
Query: 736 gccattccaaaatctgatatcttgggtttcat 767
||||| ||||||||||||||||| || |||||
Sbjct: 649 gccatgccaaaatctgatatctttggattcat 680
>gb|DT509164.1|DT509164 WS02422.BR_P18 PTxD-ICC-N-A-14 Populus trichocarpa x Populus
deltoides cDNA clone WS02422_P18 5', mRNA sequence
Length = 644
Score = 40.1 bits (20), Expect = 0.44
Identities = 26/28 (92%)
Strand = Plus / Minus
Query: 734 ttgccattccaaaatctgatatcttggg 761
|||||| ||||||||||||||| |||||
Sbjct: 611 ttgccaatccaaaatctgatattttggg 584
>gb|DT513780.1|DT513780 WS02422.B21_P18 PTxD-ICC-N-A-14 Populus trichocarpa x Populus
deltoides cDNA clone WS02422_P18 3', mRNA sequence
Length = 644
Score = 40.1 bits (20), Expect = 0.44
Identities = 26/28 (92%)
Strand = Plus / Plus
Query: 734 ttgccattccaaaatctgatatcttggg 761
|||||| ||||||||||||||| |||||
Sbjct: 34 ttgccaatccaaaatctgatattttggg 61
Database: Populus_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:49 PM
Number of letters in database: 203,408,664
Number of sequences in database: 369,679
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 291,485
Number of Sequences: 369679
Number of extensions: 291485
Number of successful extensions: 79274
Number of sequences better than 0.5: 29
Number of HSP's better than 0.5 without gapping: 27
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 79212
Number of HSP's gapped (non-prelim): 62
length of query: 2766
length of database: 203,408,664
effective HSP length: 20
effective length of query: 2746
effective length of database: 196,015,084
effective search space: 538257420664
effective search space used: 538257420664
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)