BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2750927.2.1
(1331 letters)
Database: Populus_nucl_with_EST.fasta
369,679 sequences; 203,408,664 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|BI137327.1|BI137327 F084P34Y Populus flower cDNA library... 60 2e-007
gb|BU869391.1|BU869391 M129E09 Populus flower cDNA library ... 60 2e-007
gb|BU875452.1|BU875452 V007C11 Populus flower cDNA library ... 60 2e-007
gb|BU883349.1|BU883349 UM89TD10 Populus flower cDNA library... 60 2e-007
gb|AF185574.2| Populus tremuloides transcription factor MAG... 60 2e-007
gb|AF034095.2| Populus tremuloides Apetala 1 protein mRNA, ... 60 2e-007
gb|AY359607.1| Populus yunnanensis sex male AGAMOUS (AG2) g... 52 6e-005
gb|AY359609.1| Populus tomentosa sex female AGAMOUS (AG2) g... 52 6e-005
gb|BU883614.1|BU883614 UM95TA01 Populus flower cDNA library... 50 2e-004
gb|AF052570.1|AF052570 Populus balsamifera subsp. trichocar... 50 2e-004
gb|BU878009.1|BU878009 V042A05 Populus flower cDNA library ... 44 0.014
gb|BU882965.1|BU882965 UM84TE12 Populus flower cDNA library... 44 0.014
gb|CK101433.1|CK101433 F057P86.5pR Populus flower cDNA libr... 44 0.014
gb|AF052571.1|AF052571 Populus balsamifera subsp. trichocar... 44 0.014
gb|AY359612.1| Populus tomentosa sex male AGAMOUS (AG1) gen... 44 0.014
gb|BU880392.1|BU880392 UM45TD08 Populus flower cDNA library... 42 0.054
gb|DT511195.1|DT511195 WS02429.BR_M24 PTxD-ICC-N-A-14 Popul... 42 0.054
gb|AY235222.1| Populus tremuloides SEP3-related MADS-box pr... 42 0.054
gb|AY359608.1| Populus yunnanensis sex male AGAMOUS (AG1) g... 42 0.054
gb|AY359610.1| Populus tomentosa sex female AGAMOUS (AG1) g... 42 0.054
gb|BI135750.1|BI135750 F057P86Y Populus flower cDNA library... 40 0.21
>gb|BI137327.1|BI137327 F084P34Y Populus flower cDNA library Populus trichocarpa cDNA, mRNA
sequence
Length = 413
Score = 60.0 bits (30), Expect = 2e-007
Identities = 54/62 (87%)
Strand = Plus / Plus
Query: 320 gtgctctgcgacgccgaggtcgcgctcatcatcttctccagccgcggcaagctctacgag 379
|||||||| || || ||||| || |||||||||||||| | ||| |||||||||||||||
Sbjct: 302 gtgctctgtgatgctgaggttgctctcatcatcttctctaaccgtggcaagctctacgag 361
Query: 380 tt 381
||
Sbjct: 362 tt 363
>gb|BU869391.1|BU869391 M129E09 Populus flower cDNA library Populus trichocarpa cDNA 5
prime, mRNA sequence
Length = 665
Score = 60.0 bits (30), Expect = 2e-007
Identities = 54/62 (87%)
Strand = Plus / Plus
Query: 320 gtgctctgcgacgccgaggtcgcgctcatcatcttctccagccgcggcaagctctacgag 379
|||||||| || || ||||| || |||||||||||||| | ||| |||||||||||||||
Sbjct: 142 gtgctctgtgatgctgaggttgctctcatcatcttctctaaccgtggcaagctctacgag 201
Query: 380 tt 381
||
Sbjct: 202 tt 203
Score = 40.1 bits (20), Expect = 0.21
Identities = 38/44 (86%)
Strand = Plus / Plus
Query: 212 atggggaggggtcgagttgagctcaagcggatcgagaacaagat 255
|||||||| ||| |||| ||||| ||| |||| |||||||||||
Sbjct: 34 atggggagaggtagagtggagctgaagaggatagagaacaagat 77
>gb|BU875452.1|BU875452 V007C11 Populus flower cDNA library Populus trichocarpa cDNA 5
prime, mRNA sequence
Length = 697
Score = 60.0 bits (30), Expect = 2e-007
Identities = 54/62 (87%)
Strand = Plus / Plus
Query: 320 gtgctctgcgacgccgaggtcgcgctcatcatcttctccagccgcggcaagctctacgag 379
|||||||| || || ||||| || |||||||||||||| | ||| |||||||||||||||
Sbjct: 386 gtgctctgtgatgctgaggttgctctcatcatcttctctaaccgtggcaagctctacgag 445
Query: 380 tt 381
||
Sbjct: 446 tt 447
Score = 40.1 bits (20), Expect = 0.21
Identities = 38/44 (86%)
Strand = Plus / Plus
Query: 212 atggggaggggtcgagttgagctcaagcggatcgagaacaagat 255
|||||||| ||| |||| ||||| ||| |||| |||||||||||
Sbjct: 278 atggggagaggtagagtggagctgaagaggatagagaacaagat 321
>gb|BU883349.1|BU883349 UM89TD10 Populus flower cDNA library Populus trichocarpa cDNA 5
prime, mRNA sequence
Length = 558
Score = 60.0 bits (30), Expect = 2e-007
Identities = 54/62 (87%)
Strand = Plus / Plus
Query: 320 gtgctctgcgacgccgaggtcgcgctcatcatcttctccagccgcggcaagctctacgag 379
|||||||| || || ||||| || |||||||||||||| | ||| |||||||||||||||
Sbjct: 145 gtgctctgtgatgctgaggttgctctcatcatcttctctaaccgtggcaagctctacgag 204
Query: 380 tt 381
||
Sbjct: 205 tt 206
Score = 40.1 bits (20), Expect = 0.21
Identities = 38/44 (86%)
Strand = Plus / Plus
Query: 212 atggggaggggtcgagttgagctcaagcggatcgagaacaagat 255
|||||||| ||| |||| ||||| ||| |||| |||||||||||
Sbjct: 37 atggggagaggtagagtggagctgaagaggatagagaacaagat 80
>gb|AF185574.2| Populus tremuloides transcription factor MAGL4 mRNA, complete cds
Length = 1195
Score = 60.0 bits (30), Expect = 2e-007
Identities = 54/62 (87%)
Strand = Plus / Plus
Query: 320 gtgctctgcgacgccgaggtcgcgctcatcatcttctccagccgcggcaagctctacgag 379
|||||||| || || ||||| || |||||||||||||| | ||| |||||||||||||||
Sbjct: 340 gtgctctgtgatgctgaggttgctctcatcatcttctctaaccgtggcaagctctacgag 399
Query: 380 tt 381
||
Sbjct: 400 tt 401
Score = 40.1 bits (20), Expect = 0.21
Identities = 38/44 (86%)
Strand = Plus / Plus
Query: 212 atggggaggggtcgagttgagctcaagcggatcgagaacaagat 255
|||||||| ||| |||| ||||| ||| |||| |||||||||||
Sbjct: 232 atggggagaggtagagtggagctgaagaggatagagaacaagat 275
>gb|AF034095.2| Populus tremuloides Apetala 1 protein mRNA, partial cds
Length = 943
Score = 60.0 bits (30), Expect = 2e-007
Identities = 54/62 (87%)
Strand = Plus / Plus
Query: 320 gtgctctgcgacgccgaggtcgcgctcatcatcttctccagccgcggcaagctctacgag 379
|||||||| || || ||||| || |||||||||||||| | ||| |||||||||||||||
Sbjct: 85 gtgctctgtgatgctgaggttgctctcatcatcttctctaaccgtggcaagctctacgag 144
Query: 380 tt 381
||
Sbjct: 145 tt 146
>gb|AY359607.1| Populus yunnanensis sex male AGAMOUS (AG2) gene, partial cds
Length = 227
Score = 52.0 bits (26), Expect = 6e-005
Identities = 104/130 (80%)
Strand = Plus / Plus
Query: 234 tcaagcggatcgagaacaagatcaaccgccaggtcaccttctccaagcgccgcaacggcc 293
|||||||||||||||||| | ||| ||||| ||||| |||| ||| | || || ||
Sbjct: 68 tcaagcggatcgagaacaccaccaatcgccaagtcactttctgcaaaaggcggaatggtt 127
Query: 294 tgctcaagaaggcctacgagctctccgtgctctgcgacgccgaggtcgcgctcatcatct 353
|||||||||| ||||| || | ||||| || ||||| || ||||| || |||||| |||
Sbjct: 128 tgctcaagaaagcctatgaattatccgttctttgcgatgctgaggttgcactcatcgtct 187
Query: 354 tctccagccg 363
||||||||||
Sbjct: 188 tctccagccg 197
>gb|AY359609.1| Populus tomentosa sex female AGAMOUS (AG2) gene, partial cds
Length = 227
Score = 52.0 bits (26), Expect = 6e-005
Identities = 104/130 (80%)
Strand = Plus / Plus
Query: 234 tcaagcggatcgagaacaagatcaaccgccaggtcaccttctccaagcgccgcaacggcc 293
|||||||||||||||||| | ||| ||||| ||||| |||| ||| | || || ||
Sbjct: 68 tcaagcggatcgagaacaccaccaatcgccaagtcactttctgcaaaaggcggaatggtt 127
Query: 294 tgctcaagaaggcctacgagctctccgtgctctgcgacgccgaggtcgcgctcatcatct 353
|||||||||| ||||| || | ||||| || ||||| || ||||| || |||||| |||
Sbjct: 128 tgctcaagaaagcctatgaattatccgttctttgcgatgctgaggttgcactcatcgtct 187
Query: 354 tctccagccg 363
||||||||||
Sbjct: 188 tctccagccg 197
>gb|BU883614.1|BU883614 UM95TA01 Populus flower cDNA library Populus trichocarpa cDNA 5
prime, mRNA sequence
Length = 613
Score = 50.1 bits (25), Expect = 2e-004
Identities = 106/133 (79%)
Strand = Plus / Plus
Query: 234 tcaagcggatcgagaacaagatcaaccgccaggtcaccttctccaagcgccgcaacggcc 293
|||||||||||||||||| | ||| ||||| ||||| |||| ||| | |||| ||
Sbjct: 295 tcaagcggatcgagaacaccaccaatcgccaagtcactttctgcaaaaggcgcagtggtt 354
Query: 294 tgctcaagaaggcctacgagctctccgtgctctgcgacgccgaggtcgcgctcatcatct 353
|||||||||| |||||||| | || || || ||||| || ||||| || |||||| |||
Sbjct: 355 tgctcaagaaagcctacgaattatctgttctttgcgatgctgaggttgcactcatcgtct 414
Query: 354 tctccagccgcgg 366
|||| ||||||||
Sbjct: 415 tctctagccgcgg 427
>gb|AF052570.1|AF052570 Populus balsamifera subsp. trichocarpa AGAMOUS homolog (PTAG1) gene,
complete cds
Length = 11485
Score = 50.1 bits (25), Expect = 2e-004
Identities = 106/133 (79%)
Strand = Plus / Plus
Query: 234 tcaagcggatcgagaacaagatcaaccgccaggtcaccttctccaagcgccgcaacggcc 293
|||||||||||||||||| | ||| ||||| ||||| |||| ||| | |||| ||
Sbjct: 3137 tcaagcggatcgagaacaccaccaatcgccaagtcactttctgcaaaaggcgcagtggtt 3196
Query: 294 tgctcaagaaggcctacgagctctccgtgctctgcgacgccgaggtcgcgctcatcatct 353
|||||||||| |||||||| | || || || ||||| || ||||| || |||||| |||
Sbjct: 3197 tgctcaagaaagcctacgaattatctgttctttgcgatgctgaggttgcactcatcgtct 3256
Query: 354 tctccagccgcgg 366
|||| ||||||||
Sbjct: 3257 tctctagccgcgg 3269
>gb|BU878009.1|BU878009 V042A05 Populus flower cDNA library Populus trichocarpa cDNA 5
prime, mRNA sequence
Length = 278
Score = 44.1 bits (22), Expect = 0.014
Identities = 103/130 (79%)
Strand = Plus / Plus
Query: 234 tcaagcggatcgagaacaagatcaaccgccaggtcaccttctccaagcgccgcaacggcc 293
|||||||||||||||||| | ||| ||||| ||||| |||| ||| | || || ||
Sbjct: 77 tcaagcggatcgagaacaccaccaatcgccaagtcactttctgcaaaaggcggaatggtt 136
Query: 294 tgctcaagaaggcctacgagctctccgtgctctgcgacgccgaggtcgcgctcatcatct 353
|||||||||| ||||| || | || || || ||||| || ||||| || |||||| |||
Sbjct: 137 tgctcaagaaagcctatgaattatctgttctttgcgatgctgaggttgcactcatcgtct 196
Query: 354 tctccagccg 363
||||||||||
Sbjct: 197 tctccagccg 206
>gb|BU882965.1|BU882965 UM84TE12 Populus flower cDNA library Populus trichocarpa cDNA 5
prime, mRNA sequence
Length = 562
Score = 44.1 bits (22), Expect = 0.014
Identities = 103/130 (79%)
Strand = Plus / Plus
Query: 234 tcaagcggatcgagaacaagatcaaccgccaggtcaccttctccaagcgccgcaacggcc 293
|||||||||||||||||| | ||| ||||| ||||| |||| ||| | || || ||
Sbjct: 218 tcaagcggatcgagaacaccaccaatcgccaagtcactttctgcaaaaggcggaatggtt 277
Query: 294 tgctcaagaaggcctacgagctctccgtgctctgcgacgccgaggtcgcgctcatcatct 353
|||||||||| ||||| || | || || || ||||| || ||||| || |||||| |||
Sbjct: 278 tgctcaagaaagcctatgaattatctgttctttgcgatgctgaggttgcactcatcgtct 337
Query: 354 tctccagccg 363
||||||||||
Sbjct: 338 tctccagccg 347
>gb|CK101433.1|CK101433 F057P86.5pR Populus flower cDNA library Populus trichocarpa cDNA
clone F057P86 5', mRNA sequence
Length = 454
Score = 44.1 bits (22), Expect = 0.014
Identities = 46/54 (85%)
Strand = Plus / Plus
Query: 320 gtgctctgcgacgccgaggtcgcgctcatcatcttctccagccgcggcaagctc 373
|||||||| || || ||||| || |||||||||||||| | ||| |||||||||
Sbjct: 348 gtgctctgtgatgctgaggttgctctcatcatcttctctaaccgtggcaagctc 401
Score = 40.1 bits (20), Expect = 0.21
Identities = 38/44 (86%)
Strand = Plus / Plus
Query: 212 atggggaggggtcgagttgagctcaagcggatcgagaacaagat 255
|||||||| ||| |||| ||||| ||| |||| |||||||||||
Sbjct: 240 atggggagaggtagagtggagctgaagaggatagagaacaagat 283
>gb|AF052571.1|AF052571 Populus balsamifera subsp. trichocarpa AGAMOUS homolog (PTAG2) gene,
complete cds
Length = 10007
Score = 44.1 bits (22), Expect = 0.014
Identities = 103/130 (79%)
Strand = Plus / Plus
Query: 234 tcaagcggatcgagaacaagatcaaccgccaggtcaccttctccaagcgccgcaacggcc 293
|||||||||||||||||| | ||| ||||| ||||| |||| ||| | || || ||
Sbjct: 2994 tcaagcggatcgagaacaccaccaatcgccaagtcactttctgcaaaaggcggaatggtt 3053
Query: 294 tgctcaagaaggcctacgagctctccgtgctctgcgacgccgaggtcgcgctcatcatct 353
|||||||||| ||||| || | || || || ||||| || ||||| || |||||| |||
Sbjct: 3054 tgctcaagaaagcctatgaattatctgttctttgcgatgctgaggttgcactcatcgtct 3113
Query: 354 tctccagccg 363
||||||||||
Sbjct: 3114 tctccagccg 3123
>gb|AY359612.1| Populus tomentosa sex male AGAMOUS (AG1) gene, partial cds
Length = 227
Score = 44.1 bits (22), Expect = 0.014
Identities = 103/130 (79%)
Strand = Plus / Plus
Query: 234 tcaagcggatcgagaacaagatcaaccgccaggtcaccttctccaagcgccgcaacggcc 293
|||||||||||||||||| | ||| ||||| ||||| |||| ||| | |||| ||
Sbjct: 68 tcaagcggatcgagaacaccaccaatcgccaagtcactttctgcaaaaggcgcagtggtt 127
Query: 294 tgctcaagaaggcctacgagctctccgtgctctgcgacgccgaggtcgcgctcatcatct 353
|||||||||| |||||||| | || || || || || || ||||| || |||||| |||
Sbjct: 128 tgctcaagaaagcctacgaattatctgttctttgtgatgctgaggttgcactcatcgtct 187
Query: 354 tctccagccg 363
||||||||||
Sbjct: 188 tctccagccg 197
>gb|BU880392.1|BU880392 UM45TD08 Populus flower cDNA library Populus trichocarpa cDNA 5
prime, mRNA sequence
Length = 474
Score = 42.1 bits (21), Expect = 0.054
Identities = 51/61 (83%)
Strand = Plus / Plus
Query: 299 aagaaggcctacgagctctccgtgctctgcgacgccgaggtcgcgctcatcatcttctcc 358
||||| ||||| ||||| ||||| || || || || ||||| || |||||||||||||||
Sbjct: 51 aagaaagcctatgagctttccgttctttgtgatgcagaggttgctctcatcatcttctcc 110
Query: 359 a 359
|
Sbjct: 111 a 111
>gb|DT511195.1|DT511195 WS02429.BR_M24 PTxD-ICC-N-A-14 Populus trichocarpa x Populus
deltoides cDNA clone WS02429_M24 5', mRNA sequence
Length = 696
Score = 42.1 bits (21), Expect = 0.054
Identities = 51/61 (83%)
Strand = Plus / Plus
Query: 299 aagaaggcctacgagctctccgtgctctgcgacgccgaggtcgcgctcatcatcttctcc 358
||||| ||||| ||||| ||||| || || || || ||||| || |||||||||||||||
Sbjct: 126 aagaaagcctatgagctttccgttctttgtgatgcagaggttgctctcatcatcttctcc 185
Query: 359 a 359
|
Sbjct: 186 a 186
>gb|AY235222.1| Populus tremuloides SEP3-related MADS-box protein (M6) mRNA,
complete cds
Length = 1098
Score = 42.1 bits (21), Expect = 0.054
Identities = 51/61 (83%)
Strand = Plus / Plus
Query: 299 aagaaggcctacgagctctccgtgctctgcgacgccgaggtcgcgctcatcatcttctcc 358
||||| ||||| ||||| ||||| || || || || ||||| || |||||||||||||||
Sbjct: 95 aagaaagcctatgagctttccgttctttgtgaagcagaggttgctctcatcatcttctcc 154
Query: 359 a 359
|
Sbjct: 155 a 155
>gb|AY359608.1| Populus yunnanensis sex male AGAMOUS (AG1) gene, partial cds
Length = 227
Score = 42.1 bits (21), Expect = 0.054
Identities = 105/133 (78%)
Strand = Plus / Plus
Query: 234 tcaagcggatcgagaacaagatcaaccgccaggtcaccttctccaagcgccgcaacggcc 293
|||||||||||||||||| | ||| ||||| ||||| |||| ||| | |||| ||
Sbjct: 68 tcaagcggatcgagaacaccaccaatcgccaagtcactttctgcaaaaggcgcagtggtt 127
Query: 294 tgctcaagaaggcctacgagctctccgtgctctgcgacgccgaggtcgcgctcatcatct 353
|||||||||| |||||||| | || || || ||||| || ||||| || |||||| |||
Sbjct: 128 tgctcaagaaagcctacgaattatctgttctttgcgatgctgaggttgcactcatcgtct 187
Query: 354 tctccagccgcgg 366
|||| | ||||||
Sbjct: 188 tctctacccgcgg 200
>gb|AY359610.1| Populus tomentosa sex female AGAMOUS (AG1) gene, partial cds
Length = 227
Score = 42.1 bits (21), Expect = 0.054
Identities = 105/133 (78%)
Strand = Plus / Plus
Query: 234 tcaagcggatcgagaacaagatcaaccgccaggtcaccttctccaagcgccgcaacggcc 293
|||||||||||||||||| | ||| ||||| ||||| |||| ||| | |||| ||
Sbjct: 68 tcaagcggatcgagaacaccaccaatcgccaagtcactttctgcaaaaggcgcagtggtt 127
Query: 294 tgctcaagaaggcctacgagctctccgtgctctgcgacgccgaggtcgcgctcatcatct 353
|||||||||| |||||||| | || || || ||||| || ||||| || |||||| |||
Sbjct: 128 tgctcaagaaagcctacgaattatctgttctttgcgatgctgaggttgcactcatcgtct 187
Query: 354 tctccagccgcgg 366
|||| | ||||||
Sbjct: 188 tctctacccgcgg 200
>gb|BI135750.1|BI135750 F057P86Y Populus flower cDNA library Populus trichocarpa cDNA, mRNA
sequence
Length = 390
Score = 40.1 bits (20), Expect = 0.21
Identities = 38/44 (86%)
Strand = Plus / Plus
Query: 212 atggggaggggtcgagttgagctcaagcggatcgagaacaagat 255
|||||||| ||| |||| ||||| ||| |||| |||||||||||
Sbjct: 239 atggggagaggtagagtggagctgaagaggatagagaacaagat 282
Database: Populus_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:49 PM
Number of letters in database: 203,408,664
Number of sequences in database: 369,679
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 148,018
Number of Sequences: 369679
Number of extensions: 148018
Number of successful extensions: 39348
Number of sequences better than 0.5: 21
Number of HSP's better than 0.5 without gapping: 13
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 39317
Number of HSP's gapped (non-prelim): 33
length of query: 1331
length of database: 203,408,664
effective HSP length: 19
effective length of query: 1312
effective length of database: 196,384,763
effective search space: 257656809056
effective search space used: 257656809056
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)