BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2750912.2.1
(1095 letters)
Database: Populus_nucl_with_EST.fasta
369,679 sequences; 203,408,664 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CK106655.1|CK106655 UB28CPB01.5pR Populus active cambium... 76 3e-012
gb|CV244991.1|CV244991 WS0256.B21_D04 PT-MB-N-A-15 Populus ... 76 3e-012
gb|CV256321.1|CV256321 WS0243.B21_I14 PTxD-ICC-N-A-14 Popul... 76 3e-012
gb|BI138460.1|BI138460 F106P90Y Populus flower cDNA library... 74 1e-011
gb|DT488034.1|DT488034 WS02535.B21_F07 PT-MB-N-A-15 Populus... 66 3e-009
gb|DT469334.1|DT469334 WS01917.C21_H09 PT-DX-N-A-10 Populus... 46 0.003
>gb|CK106655.1|CK106655 UB28CPB01.5pR Populus active cambium cDNA library Populus tremula
cDNA clone UB28CPB01 5', mRNA sequence
Length = 613
Score = 75.8 bits (38), Expect = 3e-012
Identities = 47/50 (94%)
Strand = Plus / Plus
Query: 199 tcttcggttatatctagccaaagcatgcatctcggggttcttgcgactgc 248
||||| |||||||||||||||||||||||||| ||||||||||| |||||
Sbjct: 368 tcttctgttatatctagccaaagcatgcatctaggggttcttgctactgc 417
>gb|CV244991.1|CV244991 WS0256.B21_D04 PT-MB-N-A-15 Populus trichocarpa cDNA clone
WS0256_D04 3', mRNA sequence
Length = 927
Score = 75.8 bits (38), Expect = 3e-012
Identities = 47/50 (94%)
Strand = Plus / Minus
Query: 199 tcttcggttatatctagccaaagcatgcatctcggggttcttgcgactgc 248
||||| |||||||||||||||||||||||||| ||||||||||| |||||
Sbjct: 271 tcttctgttatatctagccaaagcatgcatctaggggttcttgctactgc 222
>gb|CV256321.1|CV256321 WS0243.B21_I14 PTxD-ICC-N-A-14 Populus trichocarpa x Populus
deltoides cDNA clone WS0243_I14 3', mRNA sequence
Length = 898
Score = 75.8 bits (38), Expect = 3e-012
Identities = 47/50 (94%)
Strand = Plus / Plus
Query: 199 tcttcggttatatctagccaaagcatgcatctcggggttcttgcgactgc 248
||||| |||||||||||||||||||||||||| ||||||||||| |||||
Sbjct: 793 tcttctgttatatctagccaaagcatgcatctaggggttcttgctactgc 842
>gb|BI138460.1|BI138460 F106P90Y Populus flower cDNA library Populus trichocarpa cDNA, mRNA
sequence
Length = 499
Score = 73.8 bits (37), Expect = 1e-011
Identities = 121/149 (81%)
Strand = Plus / Plus
Query: 19 tggcgattccgccacatcttccgcgggcaacccaggaggcatctccttcagagtggttgg 78
||||| ||||| ||||| || || || ||||| ||||||| | ||||||||||| |||
Sbjct: 342 tggcgtttccgacacatttttcggggccaaccacggaggcacttgcttcagagtggatgg 401
Query: 79 agtgtttttgtcagttccaaaaggcttgttgctggagacgccttcattttcctcagagga 138
|| || ||||| || ||||||||||||||||| || || || || || || || |||||
Sbjct: 402 agcgtgtttgttagctccaaaaggcttgttgcgggtgatgcgtttatatttctaagaggt 461
Query: 139 gaaaacggtgaacttcgagttggtgttag 167
|| || || ||||||||||||||||||||
Sbjct: 462 gagaatggagaacttcgagttggtgttag 490
>gb|DT488034.1|DT488034 WS02535.B21_F07 PT-MB-N-A-15 Populus trichocarpa cDNA clone
WS02535_F07 3', mRNA sequence
Length = 434
Score = 65.9 bits (33), Expect = 3e-009
Identities = 174/221 (78%)
Strand = Plus / Minus
Query: 208 atatctagccaaagcatgcatctcggggttcttgcgactgcatggcacgcgattaacaca 267
||||| ||||| ||||||||||| ||||| ||||| || |||||||| || || ||
Sbjct: 403 atatccagccacagcatgcatcttggggtgcttgctacagcatggcatgctgtttcaacg 344
Query: 268 aagtccatgttcactgtctactacaagcctaggacgagcccttcagagtttatcattcca 327
| || |||||||||| || |||||||| ||||| || ||| ||||||| || | ||
Sbjct: 343 gggaccctgttcactgtttattacaagccaaggacaagtcctgcagagttcattgtcccc 284
Query: 328 tatgatcaatatatggagtcagtaaaaaacaattattctattgggatgagattcaggatg 387
| ||||||||| |||||||| || || || |||||||| || |||||||| || | |||
Sbjct: 283 tttgatcaatacatggagtctgtcaagaataattattccatagggatgaggtttaaaatg 224
Query: 388 aggtttgaaggggaagaggcccccgagcagaggtttactgg 428
|| |||||||| ||||| || || ||||| || ||||||||
Sbjct: 223 agatttgaaggagaagaagctcctgagcaaagatttactgg 183
>gb|DT469334.1|DT469334 WS01917.C21_H09 PT-DX-N-A-10 Populus trichocarpa cDNA clone
WS01917_H09 3', mRNA sequence
Length = 716
Score = 46.1 bits (23), Expect = 0.003
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 368 ttgggatgagattcaggatgaggtttgaagg 398
|||| |||||||||| |||||||||||||||
Sbjct: 343 ttggcatgagattcaagatgaggtttgaagg 373
Database: Populus_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:49 PM
Number of letters in database: 203,408,664
Number of sequences in database: 369,679
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 111,777
Number of Sequences: 369679
Number of extensions: 111777
Number of successful extensions: 29134
Number of sequences better than 0.5: 6
Number of HSP's better than 0.5 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 29123
Number of HSP's gapped (non-prelim): 11
length of query: 1095
length of database: 203,408,664
effective HSP length: 19
effective length of query: 1076
effective length of database: 196,384,763
effective search space: 211310004988
effective search space used: 211310004988
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)