BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2750763.3.1
(819 letters)
Database: Populus_nucl_with_EST.fasta
369,679 sequences; 203,408,664 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CF232445.1|CF232445 PtaJXO0010E9D0408 Poplar cDNA librar... 86 2e-015
gb|DT494125.1|DT494125 WS01117.BR_H22 PT-P-FL-A-2 Populus t... 66 2e-009
gb|BI129156.1|BI129156 G086P64Y Populus cambium cDNA librar... 54 9e-006
gb|DT472237.1|DT472237 WS01225.BR.1_P04 PT-GT-FL-A-3 Populu... 52 3e-005
gb|DT475731.1|DT475731 WS0128.BR_A14 PT-GT-FL-A-3 Populus t... 52 3e-005
gb|DV466002.1|DV466002 MTUNUL1.P46.A09 NUL Populus fremonti... 52 3e-005
gb|CK117394.1|CK117394 B050P34 Hybrid aspen plasmid library... 50 1e-004
gb|DV464002.1|DV464002 MTUNUL1.P22.A03 NUL Populus fremonti... 50 1e-004
gb|CF233811.1|CF233811 PtaJXO0027H4H0416 Poplar cDNA librar... 48 5e-004
gb|CF119808.1|CF119808 MTU10CS.P6.E12 Aspen stem cDNA Libra... 46 0.002
gb|CF231640.1|CF231640 PtaC0023H6H0616 Poplar cDNA library ... 44 0.008
gb|CV130500.1|CV130500 X9P05c01 Populus stem seasonal libra... 44 0.008
gb|CX169244.1|CX169244 F11_69-14-1_11.ab1 leaf inoculated w... 44 0.008
gb|CX172438.1|CX172438 C06_69-33_06.ab1 leaf inoculated wit... 44 0.008
gb|CX173931.1|CX173931 F06_69-3_12.ab1 leaf inoculated with... 44 0.008
gb|BP925648.1|BP925648 BP925648 full-length enriched poplar... 44 0.008
gb|DT473391.1|DT473391 WS01229.BR_I05 PT-GT-FL-A-3 Populus ... 44 0.008
gb|DT473465.1|DT473465 WS01229.BR_L15 PT-GT-FL-A-3 Populus ... 44 0.008
gb|DT474249.1|DT474249 WS01231.BR_F03 PT-GT-FL-A-3 Populus ... 44 0.008
gb|AI166449.1|AI166449 xylem.est.280 Poplar xylem Lambda ZA... 42 0.033
gb|BU875888.1|BU875888 V012G03 Populus flower cDNA library ... 42 0.033
gb|CN192998.1|CN192998 PtdH2313 hybrid poplar systemically ... 42 0.033
gb|CN518669.1|CN518669 GQ0103.B3_M13 GQ010 Populus trichoca... 42 0.033
gb|CN549940.1|CN549940 GQ0241.B3_J11 GQ024 Populus trichoca... 42 0.033
gb|DT475990.1|DT475990 WS0128.BR_O03 PT-GT-FL-A-3 Populus t... 42 0.033
gb|DT500358.1|DT500358 PX0015.BR_D10 PT-X-FL-A-1 Populus tr... 42 0.033
gb|DT508109.1|DT508109 WS02420.BR_B10 PTxD-ICC-N-A-14 Popul... 42 0.033
gb|DT509472.1|DT509472 WS02423.BR_N04 PTxD-ICC-N-A-14 Popul... 42 0.033
gb|BU830242.1|BU830242 T005G04 Populus apical shoot cDNA li... 40 0.13
gb|DN498898.1|DN498898 T005G04.5pR Populus shoot meristem c... 40 0.13
>gb|CF232445.1|CF232445 PtaJXO0010E9D0408 Poplar cDNA library from young opposite xylem
Populus alba x Populus tremula cDNA 5', mRNA sequence
Length = 708
Score = 85.7 bits (43), Expect = 2e-015
Identities = 127/155 (81%)
Strand = Plus / Plus
Query: 643 atcatgaacagcttcaagaccatcgacggacgcggcgccaacgtgcacatcgccaatggt 702
|||||||||||||| |||||||| ||||| || || | |||||| ||||| || ||||||
Sbjct: 109 atcatgaacagctttaagaccatagacggccgtggggtcaacgttcacattgctaatggt 168
Query: 703 gcctgcatcaccatccagtacatcaccaacgtcatcatccacgggctccacatccacgac 762
| |||||||| ||||| | | ||||| || ||||| || || |||||||| || |||
Sbjct: 169 gggtgcatcactatccaatttgttaccaatgtgatcattcatggtctccacattcatgac 228
Query: 763 tgcaagcccacggggaacgccatggtgcgcagctc 797
||||||||||| || ||||| |||||||| |||||
Sbjct: 229 tgcaagcccactggcaacgctatggtgcgtagctc 263
>gb|DT494125.1|DT494125 WS01117.BR_H22 PT-P-FL-A-2 Populus trichocarpa cDNA clone
WS01117_H22 5', mRNA sequence
Length = 895
Score = 65.9 bits (33), Expect = 2e-009
Identities = 63/73 (86%)
Strand = Plus / Plus
Query: 425 actggcacaacaaccggaagcgcctcgccgactgtggcatcggctttggccgcaacgcca 484
|||||||||| ||||| |||||||| || ||||||||||| || |||||| | || ||||
Sbjct: 452 actggcacaagaaccgcaagcgccttgctgactgtggcattggttttggcagaaatgcca 511
Query: 485 tcggcggccgtga 497
|||| ||||||||
Sbjct: 512 tcggtggccgtga 524
Score = 54.0 bits (27), Expect = 9e-006
Identities = 123/155 (79%)
Strand = Plus / Plus
Query: 643 atcatgaacagcttcaagaccatcgacggacgcggcgccaacgtgcacatcgccaatggt 702
|||||||||||||| |||||||| || || || || | ||| || ||||| || ||||||
Sbjct: 670 atcatgaacagctttaagaccatagatggccgtggggtcaatgttcacattgctaatggt 729
Query: 703 gcctgcatcaccatccagtacatcaccaacgtcatcatccacgggctccacatccacgac 762
| |||||||| ||||| | | ||||| || ||||| || || || |||||||| |||
Sbjct: 730 gggtgcatcactatccaatttgttaccaatgtgatcattcatggtctacacatccatgac 789
Query: 763 tgcaagcccacggggaacgccatggtgcgcagctc 797
||||| ||||| || || || |||||||| |||||
Sbjct: 790 tgcaaacccactggcaatgctatggtgcgtagctc 824
>gb|BI129156.1|BI129156 G086P64Y Populus cambium cDNA library Populus tremula x Populus
tremuloides cDNA, mRNA sequence
Length = 462
Score = 54.0 bits (27), Expect = 9e-006
Identities = 60/71 (84%)
Strand = Plus / Plus
Query: 727 accaacgtcatcatccacgggctccacatccacgactgcaagcccacggggaacgccatg 786
||||| || ||||| || || |||||||| || |||||||||||||| || ||||| |||
Sbjct: 173 accaatgtgatcattcatggtctccacattcatgactgcaagcccactggcaacgctatg 232
Query: 787 gtgcgcagctc 797
||||| |||||
Sbjct: 233 gtgcgtagctc 243
>gb|DT472237.1|DT472237 WS01225.BR.1_P04 PT-GT-FL-A-3 Populus trichocarpa cDNA clone
WS01225_P04 5', mRNA sequence
Length = 876
Score = 52.0 bits (26), Expect = 3e-005
Identities = 59/70 (84%)
Strand = Plus / Plus
Query: 556 ggcaccctccgctacgccgtcatccacgaagagccgctctggatcatcttcaagcgggac 615
||||| |||||||| | |||||||| |||||||| || ||||||||||| | | ||||
Sbjct: 364 ggcacactccgctatggtgtcatccaagaagagcctctgtggatcatctttgatcaggac 423
Query: 616 atggtcatca 625
||||||||||
Sbjct: 424 atggtcatca 433
>gb|DT475731.1|DT475731 WS0128.BR_A14 PT-GT-FL-A-3 Populus trichocarpa cDNA clone
WS0128_A14 5', mRNA sequence
Length = 455
Score = 52.0 bits (26), Expect = 3e-005
Identities = 59/70 (84%)
Strand = Plus / Plus
Query: 556 ggcaccctccgctacgccgtcatccacgaagagccgctctggatcatcttcaagcgggac 615
||||| |||||||| | |||||||| |||||||| || ||||||||||| | | ||||
Sbjct: 359 ggcacactccgctatggtgtcatccaagaagagcctctgtggatcatctttgatcaggac 418
Query: 616 atggtcatca 625
||||||||||
Sbjct: 419 atggtcatca 428
>gb|DV466002.1|DV466002 MTUNUL1.P46.A09 NUL Populus fremontii x Populus angustifolia cDNA,
mRNA sequence
Length = 873
Score = 52.0 bits (26), Expect = 3e-005
Identities = 59/70 (84%)
Strand = Plus / Plus
Query: 556 ggcaccctccgctacgccgtcatccacgaagagccgctctggatcatcttcaagcgggac 615
||||| |||||||| | |||||||| |||||||| || ||||||||||| | | ||||
Sbjct: 306 ggcacactccgctatggtgtcatccaagaagagcctctgtggatcatctttgatcaggac 365
Query: 616 atggtcatca 625
||||||||||
Sbjct: 366 atggtcatca 375
>gb|CK117394.1|CK117394 B050P34 Hybrid aspen plasmid library Populus tremula x Populus
tremuloides cDNA clone B050P34 5', mRNA sequence
Length = 157
Score = 50.1 bits (25), Expect = 1e-004
Identities = 55/65 (84%)
Strand = Plus / Plus
Query: 727 accaacgtcatcatccacgggctccacatccacgactgcaagcccacggggaacgccatg 786
||||| || ||||| || || |||||||| || |||||||||||||| || ||||| |||
Sbjct: 93 accaatgtgatcattcatggtctccacattcatgactgcaagcccactggcaacgctatg 152
Query: 787 gtgcg 791
|||||
Sbjct: 153 gtgcg 157
>gb|DV464002.1|DV464002 MTUNUL1.P22.A03 NUL Populus fremontii x Populus angustifolia cDNA,
mRNA sequence
Length = 880
Score = 50.1 bits (25), Expect = 1e-004
Identities = 31/33 (93%)
Strand = Plus / Plus
Query: 379 tgcgggacaggcaaccccatcgacgactgctgg 411
|||||||| ||||||||||| ||||||||||||
Sbjct: 224 tgcgggactggcaaccccattgacgactgctgg 256
>gb|CF233811.1|CF233811 PtaJXO0027H4H0416 Poplar cDNA library from young opposite xylem
Populus alba x Populus tremula cDNA 5', mRNA sequence
Length = 627
Score = 48.1 bits (24), Expect = 5e-004
Identities = 45/52 (86%)
Strand = Plus / Minus
Query: 574 gtcatccacgaagagccgctctggatcatcttcaagcgggacatggtcatca 625
|||||||| |||||||| || ||||||||||| | | ||||||||||||||
Sbjct: 423 gtcatccaggaagagcctctgtggatcatctttgatcaggacatggtcatca 372
>gb|CF119808.1|CF119808 MTU10CS.P6.E12 Aspen stem cDNA Library Populus tremuloides cDNA,
mRNA sequence
Length = 597
Score = 46.1 bits (23), Expect = 0.002
Identities = 59/71 (83%)
Strand = Plus / Minus
Query: 727 accaacgtcatcatccacgggctccacatccacgactgcaagcccacggggaacgccatg 786
||||| || ||||| || || |||||||| || |||||||||||||| || || || |||
Sbjct: 365 accaatgtgatcattcatggtctccacattcatgactgcaagcccactggcaatgctatg 306
Query: 787 gtgcgcagctc 797
||||| |||||
Sbjct: 305 gtgcgtagctc 295
>gb|CF231640.1|CF231640 PtaC0023H6H0616 Poplar cDNA library from cambial zone Populus alba
x Populus tremula cDNA 5', mRNA sequence
Length = 650
Score = 44.1 bits (22), Expect = 0.008
Identities = 59/70 (84%), Gaps = 1/70 (1%)
Strand = Plus / Plus
Query: 425 actggcacaacaaccggaagcgcctcgccgactgtggcatcggctttggccgcaacgcca 484
|||||||||| ||||| | |||||| || ||||||||||| || |||||| | |||||||
Sbjct: 397 actggcacaagaaccgca-gcgccttgctgactgtggcattggttttggcagaaacgcca 455
Query: 485 tcggcggccg 494
| || |||||
Sbjct: 456 ttggtggccg 465
>gb|CV130500.1|CV130500 X9P05c01 Populus stem seasonal library Populus deltoides cDNA, mRNA
sequence
Length = 753
Score = 44.1 bits (22), Expect = 0.008
Identities = 124/158 (78%)
Strand = Plus / Plus
Query: 643 atcatgaacagcttcaagaccatcgacggacgcggcgccaacgtgcacatcgccaatggt 702
|||||||||||||| ||||| || ||||| || || | ||| || |||||||| |||||
Sbjct: 447 atcatgaacagctttaagacaattgacggccgtggggtcaatgttcacatcgctaatgga 506
Query: 703 gcctgcatcaccatccagtacatcaccaacgtcatcatccacgggctccacatccacgac 762
| ||||| |||||||| | | ||||| || ||||| || || | ||||| || ||
Sbjct: 507 gggtgcattaccatccaatttgttaccaatgtgatcattcatggattacacattcatgat 566
Query: 763 tgcaagcccacggggaacgccatggtgcgcagctcgcc 800
||||||||||| || || || |||||||| ||||||||
Sbjct: 567 tgcaagcccactggcaatgctatggtgcggagctcgcc 604
Score = 42.1 bits (21), Expect = 0.033
Identities = 42/49 (85%)
Strand = Plus / Plus
Query: 425 actggcacaacaaccggaagcgcctcgccgactgtggcatcggctttgg 473
||||||| || ||||| |||||||| || ||||||||||| || |||||
Sbjct: 229 actggcagaagaaccgcaagcgccttgctgactgtggcattggttttgg 277
>gb|CX169244.1|CX169244 F11_69-14-1_11.ab1 leaf inoculated with Marssonia pathogen of
Populus deltoides Populus deltoides cDNA, mRNA sequence
Length = 690
Score = 44.1 bits (22), Expect = 0.008
Identities = 124/158 (78%)
Strand = Plus / Plus
Query: 643 atcatgaacagcttcaagaccatcgacggacgcggcgccaacgtgcacatcgccaatggt 702
|||||||||||||| ||||| || ||||| || || | ||| || |||||||| |||||
Sbjct: 391 atcatgaacagctttaagacaattgacggccgtggggtcaatgttcacatcgctaatgga 450
Query: 703 gcctgcatcaccatccagtacatcaccaacgtcatcatccacgggctccacatccacgac 762
| ||||| |||||||| | | ||||| || ||||| || || | ||||| || ||
Sbjct: 451 gggtgcattaccatccaatttgttaccaatgtgatcattcatggattacacattcatgat 510
Query: 763 tgcaagcccacggggaacgccatggtgcgcagctcgcc 800
||||||||||| || || || |||||||| ||||||||
Sbjct: 511 tgcaagcccactggcaatgctatggtgcggagctcgcc 548
Score = 42.1 bits (21), Expect = 0.033
Identities = 42/49 (85%)
Strand = Plus / Plus
Query: 425 actggcacaacaaccggaagcgcctcgccgactgtggcatcggctttgg 473
||||||| || ||||| |||||||| || ||||||||||| || |||||
Sbjct: 173 actggcagaagaaccgcaagcgccttgctgactgtggcattggttttgg 221
>gb|CX172438.1|CX172438 C06_69-33_06.ab1 leaf inoculated with Marssonia pathogen of Populus
deltoides Populus deltoides cDNA, mRNA sequence
Length = 640
Score = 44.1 bits (22), Expect = 0.008
Identities = 124/158 (78%)
Strand = Plus / Plus
Query: 643 atcatgaacagcttcaagaccatcgacggacgcggcgccaacgtgcacatcgccaatggt 702
|||||||||||||| ||||| || ||||| || || | ||| || |||||||| |||||
Sbjct: 342 atcatgaacagctttaagacaattgacggccgtggggtcaatgttcacatcgctaatgga 401
Query: 703 gcctgcatcaccatccagtacatcaccaacgtcatcatccacgggctccacatccacgac 762
| ||||| |||||||| | | ||||| || ||||| || || | ||||| || ||
Sbjct: 402 gggtgcattaccatccaatttgttaccaatgtgatcattcatggattacacattcatgat 461
Query: 763 tgcaagcccacggggaacgccatggtgcgcagctcgcc 800
||||||||||| || || || |||||||| ||||||||
Sbjct: 462 tgcaagcccactggcaatgctatggtgcggagctcgcc 499
Score = 42.1 bits (21), Expect = 0.033
Identities = 42/49 (85%)
Strand = Plus / Plus
Query: 425 actggcacaacaaccggaagcgcctcgccgactgtggcatcggctttgg 473
||||||| || ||||| |||||||| || ||||||||||| || |||||
Sbjct: 124 actggcagaagaaccgcaagcgccttgctgactgtggcattggttttgg 172
>gb|CX173931.1|CX173931 F06_69-3_12.ab1 leaf inoculated with Marssonia pathogen of Populus
deltoides Populus deltoides cDNA, mRNA sequence
Length = 444
Score = 44.1 bits (22), Expect = 0.008
Identities = 124/158 (78%)
Strand = Plus / Plus
Query: 643 atcatgaacagcttcaagaccatcgacggacgcggcgccaacgtgcacatcgccaatggt 702
|||||||||||||| ||||| || ||||| || || | ||| || |||||||| |||||
Sbjct: 271 atcatgaacagctttaagacaattgacggccgtggggtcaatgttcacatcgctaatgga 330
Query: 703 gcctgcatcaccatccagtacatcaccaacgtcatcatccacgggctccacatccacgac 762
| ||||| |||||||| | | ||||| || ||||| || || | ||||| || ||
Sbjct: 331 gggtgcattaccatccaatttgttaccaatgtgatcattcatggattacacattcatgat 390
Query: 763 tgcaagcccacggggaacgccatggtgcgcagctcgcc 800
||||||||||| || || || |||||||| ||||||||
Sbjct: 391 tgcaagcccactggcaatgctatggtgcggagctcgcc 428
Score = 42.1 bits (21), Expect = 0.033
Identities = 42/49 (85%)
Strand = Plus / Plus
Query: 425 actggcacaacaaccggaagcgcctcgccgactgtggcatcggctttgg 473
||||||| || ||||| |||||||| || ||||||||||| || |||||
Sbjct: 53 actggcagaagaaccgcaagcgccttgctgactgtggcattggttttgg 101
>gb|BP925648.1|BP925648 BP925648 full-length enriched poplar cDNA library Populus nigra
cDNA clone PnFL1-049_D07.f 5', mRNA sequence
Length = 535
Score = 44.1 bits (22), Expect = 0.008
Identities = 124/158 (78%)
Strand = Plus / Plus
Query: 643 atcatgaacagcttcaagaccatcgacggacgcggcgccaacgtgcacatcgccaatggt 702
|||||||||||||| ||||| || ||||| || || | ||| || |||||||| |||||
Sbjct: 247 atcatgaacagctttaagacaattgacggccgtggggtcaatgttcacatcgctaatgga 306
Query: 703 gcctgcatcaccatccagtacatcaccaacgtcatcatccacgggctccacatccacgac 762
| ||||| |||||||| | | ||||| || ||||| || || | ||||| || ||
Sbjct: 307 gggtgcattaccatccaatttgttaccaatgtgatcattcatggattacacattcatgat 366
Query: 763 tgcaagcccacggggaacgccatggtgcgcagctcgcc 800
||||||||||| || || || |||||||| ||||||||
Sbjct: 367 tgcaagcccactggcaatgctatggtgcggagctcgcc 404
>gb|DT473391.1|DT473391 WS01229.BR_I05 PT-GT-FL-A-3 Populus trichocarpa cDNA clone
WS01229_I05 5', mRNA sequence
Length = 894
Score = 44.1 bits (22), Expect = 0.008
Identities = 124/158 (78%)
Strand = Plus / Plus
Query: 643 atcatgaacagcttcaagaccatcgacggacgcggcgccaacgtgcacatcgccaatggt 702
|||||||||||||| ||||| || ||||| || || | ||| || |||||||| |||||
Sbjct: 661 atcatgaacagctttaagacaattgacggccgtggggtcaatgttcacatcgctaatgga 720
Query: 703 gcctgcatcaccatccagtacatcaccaacgtcatcatccacgggctccacatccacgac 762
| ||||| |||||||| | | ||||| || ||||| || || | ||||| || ||
Sbjct: 721 gggtgcattaccatccaatttgttaccaatgtgatcattcatggattacacattcatgat 780
Query: 763 tgcaagcccacggggaacgccatggtgcgcagctcgcc 800
||||||||||| || || || |||||||| ||||||||
Sbjct: 781 tgcaagcccactggcaatgctatggtgcggagctcgcc 818
Score = 42.1 bits (21), Expect = 0.033
Identities = 42/49 (85%)
Strand = Plus / Plus
Query: 425 actggcacaacaaccggaagcgcctcgccgactgtggcatcggctttgg 473
||||||| || ||||| |||||||| || ||||||||||| || |||||
Sbjct: 443 actggcagaagaaccgcaagcgccttgctgactgtggcattggttttgg 491
>gb|DT473465.1|DT473465 WS01229.BR_L15 PT-GT-FL-A-3 Populus trichocarpa cDNA clone
WS01229_L15 5', mRNA sequence
Length = 962
Score = 44.1 bits (22), Expect = 0.008
Identities = 124/158 (78%)
Strand = Plus / Plus
Query: 643 atcatgaacagcttcaagaccatcgacggacgcggcgccaacgtgcacatcgccaatggt 702
|||||||||||||| ||||| || ||||| || || | ||| || |||||||| |||||
Sbjct: 661 atcatgaacagctttaagacaattgacggccgtggggtcaatgttcacatcgctaatgga 720
Query: 703 gcctgcatcaccatccagtacatcaccaacgtcatcatccacgggctccacatccacgac 762
| ||||| |||||||| | | ||||| || ||||| || || | ||||| || ||
Sbjct: 721 gggtgcattaccatccaatttgttaccaatgtgatcattcatggattacacattcatgat 780
Query: 763 tgcaagcccacggggaacgccatggtgcgcagctcgcc 800
||||||||||| || || || |||||||| ||||||||
Sbjct: 781 tgcaagcccactggcaatgctatggtgcggagctcgcc 818
Score = 42.1 bits (21), Expect = 0.033
Identities = 42/49 (85%)
Strand = Plus / Plus
Query: 425 actggcacaacaaccggaagcgcctcgccgactgtggcatcggctttgg 473
||||||| || ||||| |||||||| || ||||||||||| || |||||
Sbjct: 443 actggcagaagaaccgcaagcgccttgctgactgtggcattggttttgg 491
>gb|DT474249.1|DT474249 WS01231.BR_F03 PT-GT-FL-A-3 Populus trichocarpa cDNA clone
WS01231_F03 5', mRNA sequence
Length = 906
Score = 44.1 bits (22), Expect = 0.008
Identities = 124/158 (78%)
Strand = Plus / Plus
Query: 643 atcatgaacagcttcaagaccatcgacggacgcggcgccaacgtgcacatcgccaatggt 702
|||||||||||||| ||||| || ||||| || || | ||| || |||||||| |||||
Sbjct: 661 atcatgaacagctttaagacaattgacggccgtggggtcaatgttcacatcgctaatgga 720
Query: 703 gcctgcatcaccatccagtacatcaccaacgtcatcatccacgggctccacatccacgac 762
| ||||| |||||||| | | ||||| || ||||| || || | ||||| || ||
Sbjct: 721 gggtgcattaccatccaatttgttaccaatgtgatcattcatggattacacattcatgat 780
Query: 763 tgcaagcccacggggaacgccatggtgcgcagctcgcc 800
||||||||||| || || || |||||||| ||||||||
Sbjct: 781 tgcaagcccactggcaatgctatggtgcggagctcgcc 818
Score = 42.1 bits (21), Expect = 0.033
Identities = 42/49 (85%)
Strand = Plus / Plus
Query: 425 actggcacaacaaccggaagcgcctcgccgactgtggcatcggctttgg 473
||||||| || ||||| |||||||| || ||||||||||| || |||||
Sbjct: 443 actggcagaagaaccgcaagcgccttgctgactgtggcattggttttgg 491
>gb|AI166449.1|AI166449 xylem.est.280 Poplar xylem Lambda ZAPII library Populus trichocarpa
cDNA 5', mRNA sequence
Length = 333
Score = 42.1 bits (21), Expect = 0.033
Identities = 30/33 (90%)
Strand = Plus / Plus
Query: 379 tgcgggacaggcaaccccatcgacgactgctgg 411
|||||||| ||||||||||| || |||||||||
Sbjct: 150 tgcgggactggcaaccccattgatgactgctgg 182
>gb|BU875888.1|BU875888 V012G03 Populus flower cDNA library Populus trichocarpa cDNA 5
prime, mRNA sequence
Length = 674
Score = 42.1 bits (21), Expect = 0.033
Identities = 30/33 (90%)
Strand = Plus / Plus
Query: 379 tgcgggacaggcaaccccatcgacgactgctgg 411
|||||||| ||||||||||| || |||||||||
Sbjct: 217 tgcgggactggcaaccccattgatgactgctgg 249
>gb|CN192998.1|CN192998 PtdH2313 hybrid poplar systemically wound-induced leaf cDNA library
Populus trichocarpa x Populus deltoides cDNA 5, mRNA
sequence
Length = 396
Score = 42.1 bits (21), Expect = 0.033
Identities = 30/33 (90%)
Strand = Plus / Plus
Query: 379 tgcgggacaggcaaccccatcgacgactgctgg 411
|||||||| ||||||||||| || |||||||||
Sbjct: 173 tgcgggactggcaaccccattgatgactgctgg 205
>gb|CN518669.1|CN518669 GQ0103.B3_M13 GQ010 Populus trichocarpa x Populus deltoides cDNA
clone GQ0103_M13 5', mRNA sequence
Length = 245
Score = 42.1 bits (21), Expect = 0.033
Identities = 30/33 (90%)
Strand = Plus / Plus
Query: 379 tgcgggacaggcaaccccatcgacgactgctgg 411
|||||||| ||||||||||| || |||||||||
Sbjct: 188 tgcgggactggcaaccccattgatgactgctgg 220
>gb|CN549940.1|CN549940 GQ0241.B3_J11 GQ024 Populus trichocarpa x Populus deltoides cDNA
clone GQ0241_J11 5', mRNA sequence
Length = 840
Score = 42.1 bits (21), Expect = 0.033
Identities = 30/33 (90%)
Strand = Plus / Plus
Query: 379 tgcgggacaggcaaccccatcgacgactgctgg 411
|||||||| ||||||||||| || |||||||||
Sbjct: 169 tgcgggactggcaaccccattgatgactgctgg 201
>gb|DT475990.1|DT475990 WS0128.BR_O03 PT-GT-FL-A-3 Populus trichocarpa cDNA clone
WS0128_O03 5', mRNA sequence
Length = 503
Score = 42.1 bits (21), Expect = 0.033
Identities = 42/49 (85%)
Strand = Plus / Plus
Query: 425 actggcacaacaaccggaagcgcctcgccgactgtggcatcggctttgg 473
||||||| || ||||| |||||||| || ||||||||||| || |||||
Sbjct: 444 actggcagaagaaccgcaagcgccttgctgactgtggcattggttttgg 492
>gb|DT500358.1|DT500358 PX0015.BR_D10 PT-X-FL-A-1 Populus trichocarpa cDNA clone PX0015_D10
5', mRNA sequence
Length = 661
Score = 42.1 bits (21), Expect = 0.033
Identities = 30/33 (90%)
Strand = Plus / Plus
Query: 379 tgcgggacaggcaaccccatcgacgactgctgg 411
|||||||| ||||||||||| || |||||||||
Sbjct: 93 tgcgggactggcaaccccattgatgactgctgg 125
>gb|DT508109.1|DT508109 WS02420.BR_B10 PTxD-ICC-N-A-14 Populus trichocarpa x Populus
deltoides cDNA clone WS02420_B10 5', mRNA sequence
Length = 874
Score = 42.1 bits (21), Expect = 0.033
Identities = 30/33 (90%)
Strand = Plus / Plus
Query: 379 tgcgggacaggcaaccccatcgacgactgctgg 411
|||||||| ||||||||||| || |||||||||
Sbjct: 187 tgcgggactggcaaccccattgatgactgctgg 219
>gb|DT509472.1|DT509472 WS02423.BR_N04 PTxD-ICC-N-A-14 Populus trichocarpa x Populus
deltoides cDNA clone WS02423_N04 5', mRNA sequence
Length = 830
Score = 42.1 bits (21), Expect = 0.033
Identities = 30/33 (90%)
Strand = Plus / Plus
Query: 379 tgcgggacaggcaaccccatcgacgactgctgg 411
|||||||| ||||||||||| || |||||||||
Sbjct: 187 tgcgggactggcaaccccattgatgactgctgg 219
>gb|BU830242.1|BU830242 T005G04 Populus apical shoot cDNA library Populus tremula x Populus
tremuloides cDNA 5 prime, mRNA sequence
Length = 563
Score = 40.1 bits (20), Expect = 0.13
Identities = 29/32 (90%)
Strand = Plus / Plus
Query: 391 aaccccatcgacgactgctggcgctgcgactc 422
|||||||||||||| |||||| | ||||||||
Sbjct: 131 aaccccatcgacgattgctggagatgcgactc 162
>gb|DN498898.1|DN498898 T005G04.5pR Populus shoot meristem cDNA library Populus tremula x
Populus tremuloides cDNA clone T005G04 5', mRNA sequence
Length = 747
Score = 40.1 bits (20), Expect = 0.13
Identities = 29/32 (90%)
Strand = Plus / Plus
Query: 391 aaccccatcgacgactgctggcgctgcgactc 422
|||||||||||||| |||||| | ||||||||
Sbjct: 197 aaccccatcgacgattgctggagatgcgactc 228
Database: Populus_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:49 PM
Number of letters in database: 203,408,664
Number of sequences in database: 369,679
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 71,023
Number of Sequences: 369679
Number of extensions: 71023
Number of successful extensions: 19088
Number of sequences better than 0.5: 30
Number of HSP's better than 0.5 without gapping: 30
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 19029
Number of HSP's gapped (non-prelim): 58
length of query: 819
length of database: 203,408,664
effective HSP length: 19
effective length of query: 800
effective length of database: 196,384,763
effective search space: 157107810400
effective search space used: 157107810400
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)