BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2750753.2.1
(1126 letters)
Database: Populus_nucl_with_EST.fasta
369,679 sequences; 203,408,664 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|DT488034.1|DT488034 WS02535.B21_F07 PT-MB-N-A-15 Populus... 115 4e-024
gb|CK106655.1|CK106655 UB28CPB01.5pR Populus active cambium... 70 2e-010
gb|CV244991.1|CV244991 WS0256.B21_D04 PT-MB-N-A-15 Populus ... 70 2e-010
gb|CV256321.1|CV256321 WS0243.B21_I14 PTxD-ICC-N-A-14 Popul... 70 2e-010
gb|CN519772.1|CN519772 GQ0106.B3_E05 GQ010 Populus trichoca... 56 3e-006
gb|DT491850.1|DT491850 WS02548.C21_P18 PT-MB-N-A-15 Populus... 56 3e-006
gb|DV463887.1|DV463887 MTUNUL1.P20.F06 NUL Populus fremonti... 50 2e-004
gb|BI138460.1|BI138460 F106P90Y Populus flower cDNA library... 48 7e-004
gb|BU821803.1|BU821803 UB28CPB01 Populus tremula cambium cD... 42 0.045
>gb|DT488034.1|DT488034 WS02535.B21_F07 PT-MB-N-A-15 Populus trichocarpa cDNA clone
WS02535_F07 3', mRNA sequence
Length = 434
Score = 115 bits (58), Expect = 4e-024
Identities = 103/118 (87%)
Strand = Plus / Minus
Query: 380 aatgttccatcttcagtaatatcaagccacagcatgcatcttggtgttcttgctacagca 439
||||||||||| || || ||||| |||||||||||||||||||| || ||||||||||||
Sbjct: 421 aatgttccatcatctgtcatatccagccacagcatgcatcttggggtgcttgctacagca 362
Query: 440 tggcatgctgttaacactgggaccatgtttactgtctactacaagcctaggacaagtc 497
|||||||||||| || |||||| |||| ||||| || |||||||| ||||||||||
Sbjct: 361 tggcatgctgtttcaacggggaccctgttcactgtttattacaagccaaggacaagtc 304
Score = 56.0 bits (28), Expect = 3e-006
Identities = 65/76 (85%), Gaps = 1/76 (1%)
Strand = Plus / Minus
Query: 559 atagggatgagatttaaaatgaggttt-aaggtgaagaggctccagaacaaaggttcact 617
||||||||||| ||||||||||| ||| |||| ||||| ||||| || ||||| || |||
Sbjct: 244 atagggatgaggtttaaaatgagatttgaaggagaagaagctcctgagcaaagatttact 185
Query: 618 gggaccattgttggaa 633
|| || ||||||||||
Sbjct: 184 ggcactattgttggaa 169
>gb|CK106655.1|CK106655 UB28CPB01.5pR Populus active cambium cDNA library Populus tremula
cDNA clone UB28CPB01 5', mRNA sequence
Length = 613
Score = 69.9 bits (35), Expect = 2e-010
Identities = 107/131 (81%)
Strand = Plus / Plus
Query: 305 gatgccttcatctttctaagaggtgatagtggggagcttcgtgtaggagtcaggcgtgcc 364
||||| |||||||| ||||| || || | ||| ||||||||||| ||||| ||| | |
Sbjct: 284 gatgcattcatcttcctaaggggagaaaatggcgagcttcgtgtgggagtaaggaggctc 343
Query: 365 atgaggcagcaagcaaatgttccatcttcagtaatatcaagccacagcatgcatcttggt 424
|||||||| || ||||| | |||||||| || ||||| ||||| ||||||||||| ||
Sbjct: 344 atgaggcaacagacaaatatgccatcttctgttatatctagccaaagcatgcatctaggg 403
Query: 425 gttcttgctac 435
|||||||||||
Sbjct: 404 gttcttgctac 414
Score = 42.1 bits (21), Expect = 0.045
Identities = 63/77 (81%)
Strand = Plus / Plus
Query: 62 tgcaagacattgacagcctctgataccagcactcatggtggattctcggtgctgcggcgc 121
||||||||| | || || ||||| || |||||||||||||| ||||| || || || |
Sbjct: 41 tgcaagacacttactgcttctgacacaagcactcatggtggtttctctgttcttcgaagg 100
Query: 122 catgcagatgagtgtct 138
||||||||||| |||||
Sbjct: 101 catgcagatgattgtct 117
>gb|CV244991.1|CV244991 WS0256.B21_D04 PT-MB-N-A-15 Populus trichocarpa cDNA clone
WS0256_D04 3', mRNA sequence
Length = 927
Score = 69.9 bits (35), Expect = 2e-010
Identities = 107/131 (81%)
Strand = Plus / Minus
Query: 305 gatgccttcatctttctaagaggtgatagtggggagcttcgtgtaggagtcaggcgtgcc 364
||||| |||||||| ||||| || || | ||| ||||||||||| ||||| ||| | |
Sbjct: 355 gatgcattcatcttcctaaggggagaaaatggcgagcttcgtgtgggagtaaggaggctc 296
Query: 365 atgaggcagcaagcaaatgttccatcttcagtaatatcaagccacagcatgcatcttggt 424
|||||||| || ||||| | |||||||| || ||||| ||||| ||||||||||| ||
Sbjct: 295 atgaggcaacagacaaatatgccatcttctgttatatctagccaaagcatgcatctaggg 236
Query: 425 gttcttgctac 435
|||||||||||
Sbjct: 235 gttcttgctac 225
Score = 42.1 bits (21), Expect = 0.045
Identities = 63/77 (81%)
Strand = Plus / Minus
Query: 62 tgcaagacattgacagcctctgataccagcactcatggtggattctcggtgctgcggcgc 121
||||||||| | || || ||||| || |||||||||||||| ||||| || || || |
Sbjct: 598 tgcaagacacttactgcttctgacacaagcactcatggtggtttctctgttcttcgaagg 539
Query: 122 catgcagatgagtgtct 138
||||||||||| |||||
Sbjct: 538 catgcagatgattgtct 522
>gb|CV256321.1|CV256321 WS0243.B21_I14 PTxD-ICC-N-A-14 Populus trichocarpa x Populus
deltoides cDNA clone WS0243_I14 3', mRNA sequence
Length = 898
Score = 69.9 bits (35), Expect = 2e-010
Identities = 107/131 (81%)
Strand = Plus / Plus
Query: 305 gatgccttcatctttctaagaggtgatagtggggagcttcgtgtaggagtcaggcgtgcc 364
||||| |||||||| ||||| || || | ||| ||||||||||| ||||| ||| | |
Sbjct: 709 gatgcattcatcttcctaaggggagaaaatggcgagcttcgtgtgggagtaaggaggctc 768
Query: 365 atgaggcagcaagcaaatgttccatcttcagtaatatcaagccacagcatgcatcttggt 424
|||||||| || ||||| | |||||||| || ||||| ||||| ||||||||||| ||
Sbjct: 769 atgaggcaacagacaaatatgccatcttctgttatatctagccaaagcatgcatctaggg 828
Query: 425 gttcttgctac 435
|||||||||||
Sbjct: 829 gttcttgctac 839
Score = 42.1 bits (21), Expect = 0.045
Identities = 63/77 (81%)
Strand = Plus / Plus
Query: 62 tgcaagacattgacagcctctgataccagcactcatggtggattctcggtgctgcggcgc 121
||||||||| | || || ||||| || |||||||||||||| ||||| || || || |
Sbjct: 466 tgcaagacacttactgcttctgacacaagcactcatggtggtttctctgttcttcgaagg 525
Query: 122 catgcagatgagtgtct 138
||||||||||| |||||
Sbjct: 526 catgcagatgattgtct 542
>gb|CN519772.1|CN519772 GQ0106.B3_E05 GQ010 Populus trichocarpa x Populus deltoides cDNA
clone GQ0106_E05 5', mRNA sequence
Length = 779
Score = 56.0 bits (28), Expect = 3e-006
Identities = 65/76 (85%), Gaps = 1/76 (1%)
Strand = Plus / Plus
Query: 559 atagggatgagatttaaaatgaggttt-aaggtgaagaggctccagaacaaaggttcact 617
||||||||||| ||||||||||| ||| |||| ||||| ||||| || ||||| || |||
Sbjct: 102 atagggatgaggtttaaaatgagatttgaaggagaagaagctcccgagcaaagatttact 161
Query: 618 gggaccattgttggaa 633
|| || ||||||||||
Sbjct: 162 ggcactattgttggaa 177
>gb|DT491850.1|DT491850 WS02548.C21_P18 PT-MB-N-A-15 Populus trichocarpa cDNA clone
WS02548_P18 3', mRNA sequence
Length = 302
Score = 56.0 bits (28), Expect = 3e-006
Identities = 65/76 (85%), Gaps = 1/76 (1%)
Strand = Plus / Minus
Query: 559 atagggatgagatttaaaatgaggttt-aaggtgaagaggctccagaacaaaggttcact 617
||||||||||| ||||||||||| ||| |||| ||||| ||||| || ||||| || |||
Sbjct: 176 atagggatgaggtttaaaatgagatttgaaggagaagaagctcctgagcaaagatttact 117
Query: 618 gggaccattgttggaa 633
|| || ||||||||||
Sbjct: 116 ggcactattgttggaa 101
>gb|DV463887.1|DV463887 MTUNUL1.P20.F06 NUL Populus fremontii x Populus angustifolia cDNA,
mRNA sequence
Length = 718
Score = 50.1 bits (25), Expect = 2e-004
Identities = 46/53 (86%)
Strand = Plus / Plus
Query: 53 cactccttctgcaagacattgacagcctctgataccagcactcatggtggatt 105
||||||||||||||| || || ||||||||||| ||||| |||||||||||
Sbjct: 219 cactccttctgcaaggtgttaactgcctctgatacgagcacccatggtggatt 271
>gb|BI138460.1|BI138460 F106P90Y Populus flower cDNA library Populus trichocarpa cDNA, mRNA
sequence
Length = 499
Score = 48.1 bits (24), Expect = 7e-004
Identities = 75/92 (81%)
Strand = Plus / Plus
Query: 83 gataccagcactcatggtggattctcggtgctgcggcgccatgcagatgagtgtcttccg 142
|||||||| |||||||||||||| ||||| || | | ||||||||||| ||||||||
Sbjct: 216 gataccagtactcatggtggattttcggttcttagaagacatgcagatgaatgtcttcca 275
Query: 143 ccactggatatgacccgtcaacctccaacaca 174
|| |||||||| | | || |||||||||||
Sbjct: 276 cctttggatatgtcaaggcagcctccaacaca 307
>gb|BU821803.1|BU821803 UB28CPB01 Populus tremula cambium cDNA library Populus tremula cDNA
5 prime, mRNA sequence
Length = 398
Score = 42.1 bits (21), Expect = 0.045
Identities = 63/77 (81%)
Strand = Plus / Plus
Query: 62 tgcaagacattgacagcctctgataccagcactcatggtggattctcggtgctgcggcgc 121
||||||||| | || || ||||| || |||||||||||||| ||||| || || || |
Sbjct: 60 tgcaagacacttactgcttctgacacaagcactcatggtggtttctctgttcttcgaagg 119
Query: 122 catgcagatgagtgtct 138
||||||||||| |||||
Sbjct: 120 catgcagatgattgtct 136
Database: Populus_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:49 PM
Number of letters in database: 203,408,664
Number of sequences in database: 369,679
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 132,667
Number of Sequences: 369679
Number of extensions: 132667
Number of successful extensions: 35525
Number of sequences better than 0.5: 9
Number of HSP's better than 0.5 without gapping: 7
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 35505
Number of HSP's gapped (non-prelim): 21
length of query: 1126
length of database: 203,408,664
effective HSP length: 19
effective length of query: 1107
effective length of database: 196,384,763
effective search space: 217397932641
effective search space used: 217397932641
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)