BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2750663.2.1
(1282 letters)
Database: Populus_nucl_with_EST.fasta
369,679 sequences; 203,408,664 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CV253102.1|CV253102 PX0019.B21_H22 PT-X-FL-A-1 Populus t... 56 3e-006
>gb|CV253102.1|CV253102 PX0019.B21_H22 PT-X-FL-A-1 Populus trichocarpa cDNA clone PX0019_H22
3', mRNA sequence
Length = 648
Score = 56.0 bits (28), Expect = 3e-006
Identities = 61/72 (84%)
Strand = Plus / Plus
Query: 1175 ttcatcagcaagattctccttgtatggtagcaacctctggcatatcctcaggagtccaaa 1234
||||||||| || ||||||||||| || |||| || |||||| |||| |||||||||||
Sbjct: 283 ttcatcagccaggttctccttgtagggcagcagccgctggcaaatccggaggagtccaaa 342
Query: 1235 aatagctttctc 1246
|| ||| |||||
Sbjct: 343 aacagccttctc 354
Database: Populus_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:49 PM
Number of letters in database: 203,408,664
Number of sequences in database: 369,679
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 122,795
Number of Sequences: 369679
Number of extensions: 122795
Number of successful extensions: 33403
Number of sequences better than 0.5: 1
Number of HSP's better than 0.5 without gapping: 1
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 33400
Number of HSP's gapped (non-prelim): 3
length of query: 1282
length of database: 203,408,664
effective HSP length: 19
effective length of query: 1263
effective length of database: 196,384,763
effective search space: 248033955669
effective search space used: 248033955669
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)