BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2750422.2.1
(1599 letters)
Database: Populus_nucl_with_EST.fasta
369,679 sequences; 203,408,664 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CX659530.1|CX659530 PO01031G08 Poplar SC cDNA library Po... 115 5e-024
gb|DT487134.1|DT487134 WS02532.B21_N23 PT-MB-N-A-15 Populus... 98 1e-018
gb|CV266030.1|CV266030 WS02028.B21_O20 PTxN-IB-N-A-11 Popul... 90 3e-016
gb|CV231954.1|CV231954 WS0196.B21_A23 PT-DX-N-A-10 Populus ... 78 1e-012
gb|CX176358.1|CX176358 D07_69-46_07.ab1 leaf inoculated wit... 68 1e-009
gb|CX185454.1|CX185454 C03_45-122_05.ab1 leaf inoculated wi... 66 4e-009
gb|CX185748.1|CX185748 D03_45-122_07.ab1 leaf inoculated wi... 66 4e-009
gb|CF229408.1|CF229408 PtaXM0025A8A0802 Poplar cDNA library... 64 2e-008
gb|BU809253.1|BU809253 UL55PF05 Populus leaf cDNA library P... 58 1e-006
gb|CV130938.1|CV130938 L1P01h04 Populus stem seasonal libra... 58 1e-006
gb|CV241632.1|CV241632 WS02512.B21_M13 PT-MB-N-A-15 Populus... 58 1e-006
gb|CV274835.1|CV274835 WS0174.B21.1_I16 PTxD-NR-A-8 Populus... 58 1e-006
gb|CX178458.1|CX178458 E10_45-98_10.ab1 leaf inoculated wit... 58 1e-006
gb|CX179222.1|CX179222 H04_45-2_16.ab1 leaf inoculated with... 58 1e-006
gb|CX181013.1|CX181013 C01_45-32_05.ab1 leaf inoculated wit... 58 1e-006
gb|CX185776.1|CX185776 G01_45-28_13.ab1 leaf inoculated wit... 58 1e-006
gb|DT504759.1|DT504759 WS01314.B21_J19 PTxD-IL-FL-A-4 Popul... 58 1e-006
gb|CV267249.1|CV267249 WS02031.B21_D19 PTxN-IB-N-A-11 Popul... 54 2e-005
gb|BU886924.1|BU886924 R052C11 Populus root cDNA library Po... 50 3e-004
gb|AJ534481.1|AJ534481 AJ534481 Populus euphratica root and... 50 3e-004
gb|CN517621.1|CN517621 GQ0091.B3_P16 GQ009 Populus trichoca... 50 3e-004
gb|CV231085.1|CV231085 WS0193.B21_I02 PT-DX-N-A-10 Populus ... 50 3e-004
gb|CV276199.1|CV276199 WS0178.B21.1_P11 PTxD-NR-A-8 Populus... 50 3e-004
gb|BP925465.1|BP925465 BP925465 full-length enriched poplar... 50 3e-004
gb|DV466281.1|DV466281 MTUNUL1.P49.E12 NUL Populus fremonti... 50 3e-004
gb|DN485992.1|DN485992 N059A05.3pR Populus bark cDNA librar... 46 0.004
gb|DT478096.1|DT478096 WS02521.BR_N10 PT-MB-N-A-15 Populus ... 46 0.004
gb|DT483164.1|DT483164 WS02521.B21_N10 PT-MB-N-A-15 Populus... 46 0.004
gb|DT501894.1|DT501894 WS01314.BR_J19 PTxD-IL-FL-A-4 Populu... 46 0.004
gb|AF139835.1|AF139835 Populus tremula x Populus tremuloide... 46 0.004
gb|BI131810.1|BI131810 G126P02Y Populus cambium cDNA librar... 44 0.016
gb|BU882337.1|BU882337 UM75TF09 Populus flower cDNA library... 44 0.016
gb|CK104913.1|CK104913 I063P18.5pR Populus senescing leaves... 44 0.016
gb|CN519649.1|CN519649 GQ0101.B3_G05 GQ010 Populus trichoca... 44 0.016
gb|CN524369.1|CN524369 GQ015M14.T3_B03 GQ015 Populus tricho... 44 0.016
gb|AJ774734.1|AJ774734 AJ774734 Populus euphratica shoot 3-... 44 0.016
gb|AJ775454.1|AJ775454 AJ775454 Populus euphratica shoot 3-... 44 0.016
gb|CX168226.1|CX168226 E04_69-22_10.ab1 leaf inoculated wit... 44 0.016
gb|CX171357.1|CX171357 F11_69-9_11.ab1 leaf inoculated with... 44 0.016
gb|CX175707.1|CX175707 F12_69-43_12.ab1 leaf inoculated wit... 44 0.016
gb|CX185583.1|CX185583 F12_45-114_12.ab1 leaf inoculated wi... 44 0.016
gb|BP923828.1|BP923828 BP923828 full-length enriched poplar... 44 0.016
gb|BP923867.1|BP923867 BP923867 full-length enriched poplar... 44 0.016
gb|DN498464.1|DN498464 S030A05.5pR Populus imbibed seed cDN... 44 0.016
gb|DV464049.1|DV464049 MTUNUL1.P22.E06 NUL Populus fremonti... 44 0.016
gb|AF133675.1|AF133675 Populus tremula x Populus tremuloide... 44 0.016
gb|AI161911.1|AI161911 A009P42U Hybrid aspen plasmid librar... 42 0.065
gb|AI164856.1|AI164856 A069p75u Hybrid aspen plasmid librar... 42 0.065
gb|BU817616.1|BU817616 UA19CPB02 Populus tremula cambium cD... 42 0.065
gb|CF118925.1|CF118925 MTU10CS.P11.C02 Aspen stem cDNA Libr... 42 0.065
gb|CK098248.1|CK098248 A009P42.5pR Hybrid aspen plasmid lib... 42 0.065
gb|CK098437.1|CK098437 A014P57.5pR Hybrid aspen plasmid lib... 42 0.065
gb|AJ776202.1|AJ776202 AJ776202 Populus euphratica root 3-6... 42 0.065
gb|AJ778029.1|AJ778029 AJ778029 Populus euphratica root 3-6... 42 0.065
gb|CX178558.1|CX178558 A08_45-120_02.ab1 leaf inoculated wi... 42 0.065
gb|CX179272.1|CX179272 A02_45-120_02.ab1 leaf inoculated wi... 42 0.065
gb|CX186379.1|CX186379 D11_45-7_07.ab1 leaf inoculated with... 42 0.065
gb|DN499691.1|DN499691 T078A02.5pR Populus shoot meristem c... 42 0.065
gb|DT475654.1|DT475654 WS0127.BR_M18 PT-GT-FL-A-3 Populus t... 42 0.065
gb|BI139173.1|BI139173 F125P58Y Populus flower cDNA library... 40 0.26
gb|BU862825.1|BU862825 S020D10 Populus imbibed seed cDNA li... 40 0.26
gb|CA933471.1|CA933471 MTU5CS.P8.E06 Aspen stem cDNA Librar... 40 0.26
gb|CA823640.1|CA823640 R29C04 two-month-old roots from clon... 40 0.26
gb|CF234692.1|CF234692 PtaJXT0014A3A0301 Poplar cDNA librar... 40 0.26
gb|CK091782.1|CK091782 F125P58.3pR Populus flower cDNA libr... 40 0.26
gb|BP922068.1|BP922068 BP922068 full-length enriched poplar... 40 0.26
gb|BP926143.1|BP926143 BP926143 full-length enriched poplar... 40 0.26
gb|BP929313.1|BP929313 BP929313 full-length enriched poplar... 40 0.26
>gb|CX659530.1|CX659530 PO01031G08 Poplar SC cDNA library Populus alba x Populus tremula var.
glandulosa cDNA clone PO01031G08 5', mRNA sequence
Length = 717
Score = 115 bits (58), Expect = 5e-024
Identities = 282/354 (79%), Gaps = 2/354 (0%)
Strand = Plus / Minus
Query: 729 tcgtggataaaatccaccagctgttggcttgacatgcagtcccaaatgccatcacatgct 788
||||| |||||||| || || || |||||||||||||| ||||| || |||||||||||
Sbjct: 356 tcgtgaataaaatctactagttgctggcttgacatgcaatcccatattccatcacatgcc 297
Query: 789 acaacaacaaagtcgtcatcatcgcagagctccacgacgttgatatcaggattggccgtc 848
| |||| ||| || |||||||| |||||||| || | ||| ||||| |||||||| |||
Sbjct: 296 agcacaagaaaatcatcatcatcacagagctcgacaatgtttatatctggattggctgtc 237
Query: 849 acaatttgcttctcgggaggcaggaatttgttctgtttcaattccacgtctccaattgcc 908
||||||||||| || ||||| || || ||||| || || ||||| || || || |||
Sbjct: 236 acaatttgcttttcaacaggcaaaaacttattctgcttgaactccacatcacctatagcc 177
Query: 909 cttgacaag-tttaaacttccatttactcgtcccatatggatgaagccccctgctttcat 967
|||| |||| |||||||| ||||| || ||||| | ||| ||||| || || ||||| |
Sbjct: 176 cttg-caagatttaaactgccattgacccgtcctacatgtatgaaaccaccagcttttaa 118
Query: 968 tatcctttctctctcagctgcaagctctggtttgtggtccctcgataaattgtatgcctt 1027
||||||||| ||||||| |||| || |||||||| || || || |||||||||||||
Sbjct: 117 aatcctttctttctcagcctcaagatcaggtttgtgatctctagacaaattgtatgcctg 58
Query: 1028 cccaccccttgaaataacacatcgggaatcaccagcatttgccacaacaagttg 1081
|| || || || |||||||| |||||||||||||| || ||||| |||||
Sbjct: 57 gccctttctagatatcacacatcgagaatcaccagcattcgcaacaacgagttg 4
>gb|DT487134.1|DT487134 WS02532.B21_N23 PT-MB-N-A-15 Populus trichocarpa cDNA clone
WS02532_N23 3', mRNA sequence
Length = 859
Score = 97.6 bits (49), Expect = 1e-018
Identities = 234/293 (79%), Gaps = 2/293 (0%)
Strand = Plus / Plus
Query: 735 ataaaatccaccagctgttggcttgacatgcagtcccaaatgccatcacatgctacaaca 794
|||||||| || || || |||||||||||||| ||||| || || |||||||| | |||
Sbjct: 423 ataaaatctactagttgctggcttgacatgcaatcccatattccgtcacatgccagcaca 482
Query: 795 acaaagtcgtcatcatcgcagagctccacgacgttgatatcaggattggccgtcacaatt 854
| |||||| |||||||| |||||||| || | ||| ||||| |||||||| |||||||||
Sbjct: 483 agaaagtcatcatcatcacagagctcgacaatgtttatatctggattggctgtcacaatt 542
Query: 855 tgcttctcgggaggcaggaatttgttctgtttcaattccacgtctccaattgcccttgac 914
||||| || ||||| || || ||||| || |||||||| || || || ||||| | |
Sbjct: 543 tgcttttcaacaggcaaaaacttattctgcttgaattccacatcacctatagccctcg-c 601
Query: 915 aag-tttaaacttccatttactcgtcccatatggatgaagccccctgctttcattatcct 973
||| |||||||| ||||| || ||||| ||| ||||| || || ||||| | |||||
Sbjct: 602 aagatttaaactgccattgacccgtcctgcatgtatgaaaccaccagcttttaaaatcct 661
Query: 974 ttctctctcagctgcaagctctggtttgtggtccctcgataaattgtatgcct 1026
|||| ||||||| |||| || |||||||| || || || |||||||||||||
Sbjct: 662 ttctttctcagcctcaagatcaggtttgtgatctctagacaaattgtatgcct 714
Score = 46.1 bits (23), Expect = 0.004
Identities = 35/39 (89%)
Strand = Plus / Plus
Query: 599 aggttttttgaactgcaccaggatcatggtcatgttgtc 637
|||||| |||||||| |||| |||||||||||| |||||
Sbjct: 287 aggtttcttgaactgtaccatgatcatggtcatattgtc 325
>gb|CV266030.1|CV266030 WS02028.B21_O20 PTxN-IB-N-A-11 Populus trichocarpa x Populus nigra
cDNA clone WS02028_O20 3', mRNA sequence
Length = 777
Score = 89.7 bits (45), Expect = 3e-016
Identities = 105/125 (84%)
Strand = Plus / Plus
Query: 735 ataaaatccaccagctgttggcttgacatgcagtcccaaatgccatcacatgctacaaca 794
|||||||| || || || |||||||||||||| ||||| || || |||||||| | |||
Sbjct: 581 ataaaatctactagttgctggcttgacatgcaatcccatattccgtcacatgccagcaca 640
Query: 795 acaaagtcgtcatcatcgcagagctccacgacgttgatatcaggattggccgtcacaatt 854
| |||||| |||||||| |||||||| || | ||| ||||| |||||||| |||||||||
Sbjct: 641 agaaagtcatcatcatcacagagctcgacaatgtttatatctggattggctgtcacaatt 700
Query: 855 tgctt 859
|||||
Sbjct: 701 tgctt 705
Score = 46.1 bits (23), Expect = 0.004
Identities = 35/39 (89%)
Strand = Plus / Plus
Query: 599 aggttttttgaactgcaccaggatcatggtcatgttgtc 637
|||||| |||||||| |||| |||||||||||| |||||
Sbjct: 445 aggtttcttgaactgtaccacgatcatggtcatattgtc 483
>gb|CV231954.1|CV231954 WS0196.B21_A23 PT-DX-N-A-10 Populus trichocarpa cDNA clone
WS0196_A23 3', mRNA sequence
Length = 509
Score = 77.8 bits (39), Expect = 1e-012
Identities = 45/47 (95%)
Strand = Plus / Plus
Query: 597 acaggttttttgaactgcaccaggatcatggtcatgttgtcgcaccc 643
|||||||||||||| ||||||| ||||||||||||||||||||||||
Sbjct: 403 acaggttttttgaattgcaccaagatcatggtcatgttgtcgcaccc 449
>gb|CX176358.1|CX176358 D07_69-46_07.ab1 leaf inoculated with Marssonia pathogen of Populus
deltoides Populus deltoides cDNA, mRNA sequence
Length = 578
Score = 67.9 bits (34), Expect = 1e-009
Identities = 217/278 (78%)
Strand = Plus / Minus
Query: 969 atcctttctctctcagctgcaagctctggtttgtggtccctcgataaattgtatgccttc 1028
||||||||| ||||||| |||| || |||||||| || || || |||||||||||||
Sbjct: 458 atcctttctttctcagcctcaagatcaggtttgtgatctctagacaaattgtatgcctgg 399
Query: 1029 ccaccccttgaaataacacatcgggaatcaccagcatttgccacaacaagttgggtgttt 1088
|| || || || |||||||| |||||||||||||| || |||| ||||| |||||
Sbjct: 398 ccctttctagatatcacacatcgagaatcaccagcattcgcaacaatgagttgattgttt 339
Query: 1089 cttattaatgctacacacgctgtactcccacatgttggcccagcaaagtcagagtgaggt 1148
|| || | | ||||| ||||| | ||| | ||||| |||| |||| |||||||||
Sbjct: 338 ctaataatcccaacacaggctgtgcaaccagaagttggtccagagaagttagagtgagga 279
Query: 1149 ccctcctctgaagcccaatcatcttgttgattatttgaatcactgccccttggagaccaa 1208
||||| || | ||||||||||| |||| | ||| ||||| | |||||||||||
Sbjct: 278 ccctcttcaaaggcccaatcatcaagttgttcattgctatcaccacatcttggagaccat 219
Query: 1209 atcaatccttctatcataccactaaacttgtttatttt 1246
||||| ||||||||||| ||| ||||||||||||||||
Sbjct: 218 atcaacccttctatcatgccagtaaacttgtttatttt 181
>gb|CX185454.1|CX185454 C03_45-122_05.ab1 leaf inoculated with Marssonia pathogen of Populus
euramericana Populus x canadensis cDNA, mRNA sequence
Length = 734
Score = 65.9 bits (33), Expect = 4e-009
Identities = 45/49 (91%)
Strand = Plus / Minus
Query: 1041 ataacacatcgggaatcaccagcatttgccacaacaagttgggtgtttc 1089
|||||||| || ||||||||||||||||| |||||||||||| ||||||
Sbjct: 593 ataacacaacgagaatcaccagcatttgcaacaacaagttggttgtttc 545
Score = 46.1 bits (23), Expect = 0.004
Identities = 26/27 (96%)
Strand = Plus / Minus
Query: 1203 gaccaaatcaatccttctatcatacca 1229
||||| |||||||||||||||||||||
Sbjct: 431 gaccatatcaatccttctatcatacca 405
Score = 44.1 bits (22), Expect = 0.016
Identities = 43/50 (86%)
Strand = Plus / Minus
Query: 1259 agatagttctcgccaacctctctgtccttgcatcatttcatccattctga 1308
||||||||||| ||| || ||||| || ||||||| |||||||||||||
Sbjct: 375 agatagttctctccatcccctctgcccacgcatcatctcatccattctga 326
Score = 42.1 bits (21), Expect = 0.065
Identities = 36/41 (87%)
Strand = Plus / Minus
Query: 1470 gctgaatgagcatcttccatggttgctcgccatccttgcat 1510
|||| ||| |||||||||||||||| ||||| ||||||||
Sbjct: 164 gctgcatgggcatcttccatggttgtacgccagccttgcat 124
>gb|CX185748.1|CX185748 D03_45-122_07.ab1 leaf inoculated with Marssonia pathogen of Populus
euramericana Populus x canadensis cDNA, mRNA sequence
Length = 731
Score = 65.9 bits (33), Expect = 4e-009
Identities = 45/49 (91%)
Strand = Plus / Minus
Query: 1041 ataacacatcgggaatcaccagcatttgccacaacaagttgggtgtttc 1089
|||||||| || ||||||||||||||||| |||||||||||| ||||||
Sbjct: 593 ataacacaacgagaatcaccagcatttgcaacaacaagttggttgtttc 545
Score = 46.1 bits (23), Expect = 0.004
Identities = 26/27 (96%)
Strand = Plus / Minus
Query: 1203 gaccaaatcaatccttctatcatacca 1229
||||| |||||||||||||||||||||
Sbjct: 431 gaccatatcaatccttctatcatacca 405
Score = 44.1 bits (22), Expect = 0.016
Identities = 34/38 (89%)
Strand = Plus / Minus
Query: 903 attgcccttgacaagtttaaacttccatttactcgtcc 940
|||||||| |||||||||||| ||||||| || |||||
Sbjct: 731 attgccctagacaagtttaaagttccattaacacgtcc 694
Score = 44.1 bits (22), Expect = 0.016
Identities = 43/50 (86%)
Strand = Plus / Minus
Query: 1259 agatagttctcgccaacctctctgtccttgcatcatttcatccattctga 1308
||||||||||| ||| || ||||| || ||||||| |||||||||||||
Sbjct: 375 agatagttctctccatcccctctgcccacgcatcatctcatccattctga 326
Score = 42.1 bits (21), Expect = 0.065
Identities = 36/41 (87%)
Strand = Plus / Minus
Query: 1470 gctgaatgagcatcttccatggttgctcgccatccttgcat 1510
|||| ||| |||||||||||||||| ||||| ||||||||
Sbjct: 164 gctgcatgggcatcttccatggttgtacgccagccttgcat 124
>gb|CF229408.1|CF229408 PtaXM0025A8A0802 Poplar cDNA library from mature xylem Populus alba x
Populus tremula cDNA 5', mRNA sequence
Length = 703
Score = 63.9 bits (32), Expect = 2e-008
Identities = 46/51 (90%)
Strand = Plus / Minus
Query: 1196 ccttggagaccaaatcaatccttctatcataccactaaacttgtttatttt 1246
|||||||||||| ||||| ||||||||||| ||| || |||||||||||||
Sbjct: 571 ccttggagaccatatcaacccttctatcatgccagtanacttgtttatttt 521
Score = 61.9 bits (31), Expect = 7e-008
Identities = 49/55 (89%)
Strand = Plus / Minus
Query: 1389 gcacagaatttggcaacgactcttcctccatgaccatcaaaaacaccaaagaatg 1443
||||||||||| ||||| ||| | |||||||| |||||| |||||||||||||||
Sbjct: 378 gcacagaatttcgcaactactttacctccatgtccatcataaacaccaaagaatg 324
Score = 60.0 bits (30), Expect = 3e-007
Identities = 36/38 (94%)
Strand = Plus / Minus
Query: 1479 gcatcttccatggttgctcgccatccttgcatagatga 1516
||||||||||||||||| ||||| ||||||||||||||
Sbjct: 288 gcatcttccatggttgcacgccaaccttgcatagatga 251
>gb|BU809253.1|BU809253 UL55PF05 Populus leaf cDNA library Populus tremula x Populus
tremuloides cDNA 5 prime, mRNA sequence
Length = 472
Score = 58.0 bits (29), Expect = 1e-006
Identities = 29/29 (100%)
Strand = Plus / Minus
Query: 1413 cctccatgaccatcaaaaacaccaaagaa 1441
|||||||||||||||||||||||||||||
Sbjct: 375 cctccatgaccatcaaaaacaccaaagaa 347
>gb|CV130938.1|CV130938 L1P01h04 Populus stem seasonal library Populus deltoides cDNA, mRNA
sequence
Length = 813
Score = 58.0 bits (29), Expect = 1e-006
Identities = 29/29 (100%)
Strand = Plus / Minus
Query: 1413 cctccatgaccatcaaaaacaccaaagaa 1441
|||||||||||||||||||||||||||||
Sbjct: 480 cctccatgaccatcaaaaacaccaaagaa 452
>gb|CV241632.1|CV241632 WS02512.B21_M13 PT-MB-N-A-15 Populus trichocarpa cDNA clone
WS02512_M13 3', mRNA sequence
Length = 645
Score = 58.0 bits (29), Expect = 1e-006
Identities = 29/29 (100%)
Strand = Plus / Plus
Query: 1413 cctccatgaccatcaaaaacaccaaagaa 1441
|||||||||||||||||||||||||||||
Sbjct: 210 cctccatgaccatcaaaaacaccaaagaa 238
>gb|CV274835.1|CV274835 WS0174.B21.1_I16 PTxD-NR-A-8 Populus trichocarpa x Populus deltoides
cDNA clone WS0174_I16 3', mRNA sequence
Length = 816
Score = 58.0 bits (29), Expect = 1e-006
Identities = 29/29 (100%)
Strand = Plus / Plus
Query: 1413 cctccatgaccatcaaaaacaccaaagaa 1441
|||||||||||||||||||||||||||||
Sbjct: 457 cctccatgaccatcaaaaacaccaaagaa 485
>gb|CX178458.1|CX178458 E10_45-98_10.ab1 leaf inoculated with Marssonia pathogen of Populus
euramericana Populus x canadensis cDNA, mRNA sequence
Length = 680
Score = 58.0 bits (29), Expect = 1e-006
Identities = 29/29 (100%)
Strand = Plus / Minus
Query: 1413 cctccatgaccatcaaaaacaccaaagaa 1441
|||||||||||||||||||||||||||||
Sbjct: 380 cctccatgaccatcaaaaacaccaaagaa 352
>gb|CX179222.1|CX179222 H04_45-2_16.ab1 leaf inoculated with Marssonia pathogen of Populus
euramericana Populus x canadensis cDNA, mRNA sequence
Length = 648
Score = 58.0 bits (29), Expect = 1e-006
Identities = 29/29 (100%)
Strand = Plus / Minus
Query: 1413 cctccatgaccatcaaaaacaccaaagaa 1441
|||||||||||||||||||||||||||||
Sbjct: 358 cctccatgaccatcaaaaacaccaaagaa 330
>gb|CX181013.1|CX181013 C01_45-32_05.ab1 leaf inoculated with Marssonia pathogen of Populus
euramericana Populus x canadensis cDNA, mRNA sequence
Length = 546
Score = 58.0 bits (29), Expect = 1e-006
Identities = 29/29 (100%)
Strand = Plus / Minus
Query: 1413 cctccatgaccatcaaaaacaccaaagaa 1441
|||||||||||||||||||||||||||||
Sbjct: 347 cctccatgaccatcaaaaacaccaaagaa 319
>gb|CX185776.1|CX185776 G01_45-28_13.ab1 leaf inoculated with Marssonia pathogen of Populus
euramericana Populus x canadensis cDNA, mRNA sequence
Length = 636
Score = 58.0 bits (29), Expect = 1e-006
Identities = 29/29 (100%)
Strand = Plus / Minus
Query: 1413 cctccatgaccatcaaaaacaccaaagaa 1441
|||||||||||||||||||||||||||||
Sbjct: 441 cctccatgaccatcaaaaacaccaaagaa 413
>gb|DT504759.1|DT504759 WS01314.B21_J19 PTxD-IL-FL-A-4 Populus trichocarpa x Populus
deltoides cDNA clone WS01314_J19 3', mRNA sequence
Length = 838
Score = 58.0 bits (29), Expect = 1e-006
Identities = 44/49 (89%)
Strand = Plus / Plus
Query: 1041 ataacacatcgggaatcaccagcatttgccacaacaagttgggtgtttc 1089
|||||||| || ||||||||||||||||| ||||| |||||| ||||||
Sbjct: 666 ataacacaacgagaatcaccagcatttgcaacaactagttggttgtttc 714
Score = 56.0 bits (28), Expect = 4e-006
Identities = 34/36 (94%)
Strand = Plus / Plus
Query: 896 gtctccaattgcccttgacaagtttaaacttccatt 931
||||||||||||||| |||||||||||| |||||||
Sbjct: 521 gtctccaattgccctagacaagtttaaagttccatt 556
>gb|CV267249.1|CV267249 WS02031.B21_D19 PTxN-IB-N-A-11 Populus trichocarpa x Populus nigra
cDNA clone WS02031_D19 3', mRNA sequence
Length = 933
Score = 54.0 bits (27), Expect = 2e-005
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 1413 cctccatgaccatcaaaaacaccaaag 1439
|||||||||||||||||||||||||||
Sbjct: 907 cctccatgaccatcaaaaacaccaaag 933
>gb|BU886924.1|BU886924 R052C11 Populus root cDNA library Populus tremula x Populus
tremuloides cDNA 5 prime, mRNA sequence
Length = 595
Score = 50.1 bits (25), Expect = 3e-004
Identities = 28/29 (96%)
Strand = Plus / Minus
Query: 1413 cctccatgaccatcaaaaacaccaaagaa 1441
||||| |||||||||||||||||||||||
Sbjct: 372 cctccgtgaccatcaaaaacaccaaagaa 344
>gb|AJ534481.1|AJ534481 AJ534481 Populus euphratica root and shoot Populus euphratica cDNA
clone 46, mRNA sequence
Length = 574
Score = 50.1 bits (25), Expect = 3e-004
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 1575 gtacctgcccgggcggccgctcgaa 1599
|||||||||||||||||||||||||
Sbjct: 479 gtacctgcccgggcggccgctcgaa 503
>gb|CN517621.1|CN517621 GQ0091.B3_P16 GQ009 Populus trichocarpa x Populus deltoides cDNA
clone GQ0091_P16 5', mRNA sequence
Length = 548
Score = 50.1 bits (25), Expect = 3e-004
Identities = 46/53 (86%)
Strand = Plus / Plus
Query: 735 ataaaatccaccagctgttggcttgacatgcagtcccaaatgccatcacatgc 787
|||||||| || || || |||||||||||||| ||||| || |||||||||||
Sbjct: 373 ataaaatctactagttgctggcttgacatgcaatcccatattccatcacatgc 425
>gb|CV231085.1|CV231085 WS0193.B21_I02 PT-DX-N-A-10 Populus trichocarpa cDNA clone
WS0193_I02 3', mRNA sequence
Length = 755
Score = 50.1 bits (25), Expect = 3e-004
Identities = 46/53 (86%)
Strand = Plus / Minus
Query: 735 ataaaatccaccagctgttggcttgacatgcagtcccaaatgccatcacatgc 787
|||||||| || || || |||||||||||||| ||||| || |||||||||||
Sbjct: 364 ataaaatctactagttgctggcttgacatgcaatcccatattccatcacatgc 312
>gb|CV276199.1|CV276199 WS0178.B21.1_P11 PTxD-NR-A-8 Populus trichocarpa x Populus
deltoides cDNA clone WS0178_P11 3', mRNA sequence
Length = 589
Score = 50.1 bits (25), Expect = 3e-004
Identities = 46/53 (86%)
Strand = Plus / Plus
Query: 735 ataaaatccaccagctgttggcttgacatgcagtcccaaatgccatcacatgc 787
|||||||| || || || |||||||||||||| ||||| || |||||||||||
Sbjct: 473 ataaaatctactagttgctggcttgacatgcaatcccatattccatcacatgc 525
Score = 50.1 bits (25), Expect = 3e-004
Identities = 85/105 (80%)
Strand = Plus / Plus
Query: 599 aggttttttgaactgcaccaggatcatggtcatgttgtcgcacccgtctccagcgatcgt 658
|||||| || ||||| |||| |||||||||||||||||| || || || ||| | ||
Sbjct: 337 aggtttcttaaactgtaccacgatcatggtcatgttgtcacatccctcaccacctgctgt 396
Query: 659 tgatggagccaggcatctgtccagcactctctcgcacacggcaga 703
|||||| |||| || || |||||||||||||| ||||| |||||
Sbjct: 397 tgatggcgccaaacacctatccagcactctctcacacactgcaga 441
>gb|BP925465.1|BP925465 BP925465 full-length enriched poplar cDNA library Populus nigra cDNA
clone PnFL1-046_K10.f 5', mRNA sequence
Length = 420
Score = 50.1 bits (25), Expect = 3e-004
Identities = 28/29 (96%)
Strand = Plus / Minus
Query: 1413 cctccatgaccatcaaaaacaccaaagaa 1441
||||||||||||||||| |||||||||||
Sbjct: 386 cctccatgaccatcaaatacaccaaagaa 358
>gb|DV466281.1|DV466281 MTUNUL1.P49.E12 NUL Populus fremontii x Populus angustifolia cDNA,
mRNA sequence
Length = 830
Score = 50.1 bits (25), Expect = 3e-004
Identities = 28/29 (96%)
Strand = Plus / Minus
Query: 1413 cctccatgaccatcaaaaacaccaaagaa 1441
||||||||||||||||| |||||||||||
Sbjct: 350 cctccatgaccatcaaacacaccaaagaa 322
>gb|DN485992.1|DN485992 N059A05.3pR Populus bark cDNA library Populus tremula x Populus
tremuloides cDNA clone N059A05 3', mRNA sequence
Length = 730
Score = 46.1 bits (23), Expect = 0.004
Identities = 35/39 (89%)
Strand = Plus / Plus
Query: 599 aggttttttgaactgcaccaggatcatggtcatgttgtc 637
||||||||| ||||| |||| |||||||||||| |||||
Sbjct: 186 aggttttttaaactgtaccacgatcatggtcatattgtc 224
>gb|DT478096.1|DT478096 WS02521.BR_N10 PT-MB-N-A-15 Populus trichocarpa cDNA clone
WS02521_N10 5', mRNA sequence
Length = 789
Score = 46.1 bits (23), Expect = 0.004
Identities = 26/27 (96%)
Strand = Plus / Minus
Query: 1203 gaccaaatcaatccttctatcatacca 1229
||||| |||||||||||||||||||||
Sbjct: 526 gaccatatcaatccttctatcatacca 500
Score = 44.1 bits (22), Expect = 0.016
Identities = 43/50 (86%)
Strand = Plus / Minus
Query: 1259 agatagttctcgccaacctctctgtccttgcatcatttcatccattctga 1308
||||||||||| ||| || ||||| || ||||||| |||||||||||||
Sbjct: 470 agatagttctctccatcccctctgcccacgcatcatctcatccattctga 421
Score = 42.1 bits (21), Expect = 0.065
Identities = 36/41 (87%)
Strand = Plus / Minus
Query: 1470 gctgaatgagcatcttccatggttgctcgccatccttgcat 1510
|||| ||| |||||||||||||||| ||||| ||||||||
Sbjct: 259 gctgcatgggcatcttccatggttgtacgccagccttgcat 219
>gb|DT483164.1|DT483164 WS02521.B21_N10 PT-MB-N-A-15 Populus trichocarpa cDNA clone
WS02521_N10 3', mRNA sequence
Length = 924
Score = 46.1 bits (23), Expect = 0.004
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 1203 gaccaaatcaatccttctatcatacca 1229
||||| |||||||||||||||||||||
Sbjct: 576 gaccatatcaatccttctatcatacca 602
Score = 44.1 bits (22), Expect = 0.016
Identities = 43/50 (86%)
Strand = Plus / Plus
Query: 1259 agatagttctcgccaacctctctgtccttgcatcatttcatccattctga 1308
||||||||||| ||| || ||||| || ||||||| |||||||||||||
Sbjct: 632 agatagttctctccatcccctctgcccacgcatcatctcatccattctga 681
Score = 42.1 bits (21), Expect = 0.065
Identities = 36/41 (87%)
Strand = Plus / Plus
Query: 1470 gctgaatgagcatcttccatggttgctcgccatccttgcat 1510
|||| ||| |||||||||||||||| ||||| ||||||||
Sbjct: 843 gctgcatgggcatcttccatggttgtacgccagccttgcat 883
>gb|DT501894.1|DT501894 WS01314.BR_J19 PTxD-IL-FL-A-4 Populus trichocarpa x Populus deltoides
cDNA clone WS01314_J19 5', mRNA sequence
Length = 667
Score = 46.1 bits (23), Expect = 0.004
Identities = 26/27 (96%)
Strand = Plus / Minus
Query: 1203 gaccaaatcaatccttctatcatacca 1229
||||| |||||||||||||||||||||
Sbjct: 523 gaccatatcaatccttctatcatacca 497
Score = 44.1 bits (22), Expect = 0.016
Identities = 43/50 (86%)
Strand = Plus / Minus
Query: 1259 agatagttctcgccaacctctctgtccttgcatcatttcatccattctga 1308
||||||||||| ||| || ||||| || ||||||| |||||||||||||
Sbjct: 467 agatagttctctccatcccctctgcccacgcatcatgtcatccattctga 418
Score = 42.1 bits (21), Expect = 0.065
Identities = 36/41 (87%)
Strand = Plus / Minus
Query: 1470 gctgaatgagcatcttccatggttgctcgccatccttgcat 1510
|||| ||| |||||||||||||||| ||||| ||||||||
Sbjct: 256 gctgcatgggcatcttccatggttgtacgccagccttgcat 216
>gb|AF139835.1|AF139835 Populus tremula x Populus tremuloides F-box containing protein TIR1
(TIR1) mRNA, complete cds
Length = 2646
Score = 46.1 bits (23), Expect = 0.004
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 1576 tacctgcccgggcggccgctcga 1598
|||||||||||||||||||||||
Sbjct: 65 tacctgcccgggcggccgctcga 43
>gb|BI131810.1|BI131810 G126P02Y Populus cambium cDNA library Populus tremula x Populus
tremuloides cDNA, mRNA sequence
Length = 563
Score = 44.1 bits (22), Expect = 0.016
Identities = 29/30 (96%), Gaps = 1/30 (3%)
Strand = Plus / Minus
Query: 1413 cctccatgacca-tcaaaaacaccaaagaa 1441
|||||||||||| |||||||||||||||||
Sbjct: 432 cctccatgaccaatcaaaaacaccaaagaa 403
>gb|BU882337.1|BU882337 UM75TF09 Populus flower cDNA library Populus trichocarpa cDNA 5
prime, mRNA sequence
Length = 605
Score = 44.1 bits (22), Expect = 0.016
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 1413 cctccatgaccatcaaaaacaccaaa 1438
|||||||||||||||||||| |||||
Sbjct: 430 cctccatgaccatcaaaaactccaaa 405
>gb|CK104913.1|CK104913 I063P18.5pR Populus senescing leaves cDNA library Populus tremula
cDNA clone I063P18 5', mRNA sequence
Length = 560
Score = 44.1 bits (22), Expect = 0.016
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 1413 cctccatgaccatcaaaaacaccaaa 1438
|||||||| |||||||||||||||||
Sbjct: 50 cctccatgcccatcaaaaacaccaaa 25
>gb|CN519649.1|CN519649 GQ0101.B3_G05 GQ010 Populus trichocarpa x Populus deltoides cDNA
clone GQ0101_G05 5', mRNA sequence
Length = 571
Score = 44.1 bits (22), Expect = 0.016
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 1413 cctccatgaccatcaaaaacaccaaa 1438
|||||||||||||||||||| |||||
Sbjct: 390 cctccatgaccatcaaaaactccaaa 365
>gb|CN524369.1|CN524369 GQ015M14.T3_B03 GQ015 Populus trichocarpa x Populus deltoides cDNA
clone GQ015M14_B03 5', mRNA sequence
Length = 727
Score = 44.1 bits (22), Expect = 0.016
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 1416 ccatgaccatcaaaaacaccaaagaa 1441
||||||||||||||||||||| ||||
Sbjct: 631 ccatgaccatcaaaaacaccacagaa 606
>gb|AJ774734.1|AJ774734 AJ774734 Populus euphratica shoot 3-6 months Populus euphratica cDNA
clone P0000300023F11F1, mRNA sequence
Length = 574
Score = 44.1 bits (22), Expect = 0.016
Identities = 28/30 (93%)
Strand = Plus / Minus
Query: 1412 tcctccatgaccatcaaaaacaccaaagaa 1441
||||||||||||||||||||| ||| ||||
Sbjct: 260 tcctccatgaccatcaaaaaccccatagaa 231
>gb|AJ775454.1|AJ775454 AJ775454 Populus euphratica shoot 3-6 months Populus euphratica cDNA
clone P0000300032G01F1, mRNA sequence
Length = 659
Score = 44.1 bits (22), Expect = 0.016
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 1413 cctccatgaccatcaaaaacaccaaa 1438
|||||||||||||||||||| |||||
Sbjct: 490 cctccatgaccatcaaaaactccaaa 465
>gb|CX168226.1|CX168226 E04_69-22_10.ab1 leaf inoculated with Marssonia pathogen of Populus
deltoides Populus deltoides cDNA, mRNA sequence
Length = 672
Score = 44.1 bits (22), Expect = 0.016
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 1416 ccatgaccatcaaaaacaccaaagaa 1441
||||||||||||||||||||| ||||
Sbjct: 641 ccatgaccatcaaaaacaccacagaa 616
>gb|CX171357.1|CX171357 F11_69-9_11.ab1 leaf inoculated with Marssonia pathogen of Populus
deltoides Populus deltoides cDNA, mRNA sequence
Length = 663
Score = 44.1 bits (22), Expect = 0.016
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 1416 ccatgaccatcaaaaacaccaaagaa 1441
||||||||||||||||||||| ||||
Sbjct: 641 ccatgaccatcaaaaacaccacagaa 616
>gb|CX175707.1|CX175707 F12_69-43_12.ab1 leaf inoculated with Marssonia pathogen of Populus
deltoides Populus deltoides cDNA, mRNA sequence
Length = 686
Score = 44.1 bits (22), Expect = 0.016
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 1416 ccatgaccatcaaaaacaccaaagaa 1441
||||||||||||||||||||| ||||
Sbjct: 671 ccatgaccatcaaaaacaccacagaa 646
>gb|CX185583.1|CX185583 F12_45-114_12.ab1 leaf inoculated with Marssonia pathogen of Populus
euramericana Populus x canadensis cDNA, mRNA sequence
Length = 656
Score = 44.1 bits (22), Expect = 0.016
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 1413 cctccatgaccatcaaaaacaccaaa 1438
|||||||| |||||||||||||||||
Sbjct: 566 cctccatgcccatcaaaaacaccaaa 541
>gb|BP923828.1|BP923828 BP923828 full-length enriched poplar cDNA library Populus nigra cDNA
clone PnFL1-024_H04.f 5', mRNA sequence
Length = 574
Score = 44.1 bits (22), Expect = 0.016
Identities = 28/30 (93%)
Strand = Plus / Minus
Query: 1412 tcctccatgaccatcaaaaacaccaaagaa 1441
||||||||||||||||||||| ||| ||||
Sbjct: 506 tcctccatgaccatcaaaaaccccatagaa 477
>gb|BP923867.1|BP923867 BP923867 full-length enriched poplar cDNA library Populus nigra cDNA
clone PnFL1-024_P09.f 5', mRNA sequence
Length = 518
Score = 44.1 bits (22), Expect = 0.016
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 1413 cctccatgaccatcaaaaacaccaaa 1438
|||||||||||||||||||| |||||
Sbjct: 294 cctccatgaccatcaaaaactccaaa 269
>gb|DN498464.1|DN498464 S030A05.5pR Populus imbibed seed cDNA library Populus tremula cDNA
clone S030A05 5', mRNA sequence
Length = 766
Score = 44.1 bits (22), Expect = 0.016
Identities = 28/30 (93%)
Strand = Plus / Minus
Query: 1412 tcctccatgaccatcaaaaacaccaaagaa 1441
||||||||||||||||||||| ||| ||||
Sbjct: 520 tcctccatgaccatcaaaaaccccatagaa 491
>gb|DV464049.1|DV464049 MTUNUL1.P22.E06 NUL Populus fremontii x Populus angustifolia cDNA,
mRNA sequence
Length = 821
Score = 44.1 bits (22), Expect = 0.016
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 1413 cctccatgaccatcaaaaacaccaaa 1438
|||||||||||||||||||| |||||
Sbjct: 426 cctccatgaccatcaaaaactccaaa 401
>gb|AF133675.1|AF133675 Populus tremula x Populus tremuloides retinoblastoma-related protein
1 (RB1) mRNA, complete cds
Length = 3572
Score = 44.1 bits (22), Expect = 0.016
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 1577 acctgcccgggcggccgctcga 1598
||||||||||||||||||||||
Sbjct: 38 acctgcccgggcggccgctcga 17
>gb|AI161911.1|AI161911 A009P42U Hybrid aspen plasmid library Populus tremula x Populus
tremuloides cDNA 5', mRNA sequence
Length = 467
Score = 42.1 bits (21), Expect = 0.065
Identities = 27/29 (93%)
Strand = Plus / Minus
Query: 1413 cctccatgaccatcaaaaacaccaaagaa 1441
|||||||| |||||||||||||| |||||
Sbjct: 127 cctccatggccatcaaaaacaccgaagaa 99
>gb|AI164856.1|AI164856 A069p75u Hybrid aspen plasmid library Populus tremula x Populus
tremuloides cDNA 5', mRNA sequence
Length = 409
Score = 42.1 bits (21), Expect = 0.065
Identities = 27/29 (93%)
Strand = Plus / Minus
Query: 1413 cctccatgaccatcaaaaacaccaaagaa 1441
||||||||||||||| |||| ||||||||
Sbjct: 51 cctccatgaccatcataaactccaaagaa 23
>gb|BU817616.1|BU817616 UA19CPB02 Populus tremula cambium cDNA library Populus tremula cDNA 5
prime, mRNA sequence
Length = 401
Score = 42.1 bits (21), Expect = 0.065
Identities = 27/29 (93%)
Strand = Plus / Minus
Query: 1413 cctccatgaccatcaaaaacaccaaagaa 1441
|||||||| |||||||||||||| |||||
Sbjct: 42 cctccatggccatcaaaaacaccgaagaa 14
>gb|CF118925.1|CF118925 MTU10CS.P11.C02 Aspen stem cDNA Library Populus tremuloides cDNA,
mRNA sequence
Length = 786
Score = 42.1 bits (21), Expect = 0.065
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 1574 agtacctgcccgggcggccgc 1594
|||||||||||||||||||||
Sbjct: 657 agtacctgcccgggcggccgc 637
Score = 40.1 bits (20), Expect = 0.26
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 1575 gtacctgcccgggcggccgc 1594
||||||||||||||||||||
Sbjct: 625 gtacctgcccgggcggccgc 644
Database: Populus_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:49 PM
Number of letters in database: 203,408,664
Number of sequences in database: 369,679
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 188,115
Number of Sequences: 369679
Number of extensions: 188115
Number of successful extensions: 50032
Number of sequences better than 0.5: 68
Number of HSP's better than 0.5 without gapping: 67
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 49897
Number of HSP's gapped (non-prelim): 134
length of query: 1599
length of database: 203,408,664
effective HSP length: 19
effective length of query: 1580
effective length of database: 196,384,763
effective search space: 310287925540
effective search space used: 310287925540
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)