BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2647917.2.1
(3189 letters)
Database: Populus_nucl_with_EST.fasta
369,679 sequences; 203,408,664 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|DN499437.1|DN499437 T058D11.5pR Populus shoot meristem c... 139 7e-031
gb|BF299460.1|BF299460 bd17-2 Poplar first strand cDNA Popu... 88 2e-015
gb|BU834220.1|BU834220 T058D11 Populus apical shoot cDNA li... 54 3e-005
gb|DT492396.1|DT492396 WS02550.C21_J12 PT-MB-N-A-15 Populus... 46 0.008
gb|CV227498.1|CV227498 WS0167.B21_F17 PT-DX-A-7 Populus tri... 42 0.13
gb|CV237060.1|CV237060 WS01226.B21.1_J14 PT-GT-FL-A-3 Popul... 42 0.13
gb|CX654946.1|CX654946 PO01003A10 Poplar SC cDNA library Po... 42 0.13
>gb|DN499437.1|DN499437 T058D11.5pR Populus shoot meristem cDNA library Populus tremula x
Populus tremuloides cDNA clone T058D11 5', mRNA sequence
Length = 865
Score = 139 bits (70), Expect = 7e-031
Identities = 295/370 (79%)
Strand = Plus / Minus
Query: 842 cctgctttgatcagaggtactgcccattcaacaatgttcccctcctcgaactgcatgtcg 901
||||||||||||||||| |||||||||||||| ||||| || || ||| | ||||||||
Sbjct: 623 cctgctttgatcagaggaactgcccattcaactatgtttccttcttcgtattgcatgtct 564
Query: 902 atcgctttcctgccacttagtatctccaggagaacaaccccgaagctgtagacatcagat 961
|| || || |||| ||| || || || | ||| | || || ||||| || ||||| |||
Sbjct: 563 atggcctttctgctactgaggatttctaagagcaacacgccaaagctataaacatcggat 504
Query: 962 tttgtagtcaagtagtggagacggtagtactcagggtcaaggtagccaagagtccctgct 1021
|| || || | |||||| || | ||||||||| || ||||| ||||||||||| |||||
Sbjct: 503 ttggttgtgaggtagtgaagcctgtagtactcgggatcaagatagccaagagttcctgcg 444
Query: 1022 ggcagctcagacagtggggtaccgctatctgcaggacccaatatagacagaccaaagtca 1081
|| ||||||| || ||| | | ||||| || || ||||| | ||| || ||||| |||
Sbjct: 443 ggaagctcagccaatggcgagctactatcagctggtcccaacaaagaaaggccaaaatca 384
Query: 1082 gcaacacgggcattgtgatcctcatcaatcaatatgtttgacgacttgatgtcccggtga 1141
| || | ||||||||| || |||||||| | |||||||| || |||||||| ||||||
Sbjct: 383 gacaccctggcattgtgttcttcatcaatgagaatgtttgaagatttgatgtctcggtga 324
Query: 1142 attacaggagggcaagcatagccatgcaagtactcaattcccctagcagcctgtacagca 1201
|||||||| || || ||||| |||||||||||||| ||||||||||| || || || |||
Sbjct: 323 attacaggtggacaggcataaccatgcaagtactcgattcccctagctgcttggactgca 264
Query: 1202 atggtgaccc 1211
||||| ||||
Sbjct: 263 atggtaaccc 254
Score = 54.0 bits (27), Expect = 3e-005
Identities = 39/43 (90%)
Strand = Plus / Minus
Query: 1259 agatgctggtacagggatccatgagccatgaactcataaacca 1301
|||||||||| || |||||||||||||||||| || |||||||
Sbjct: 206 agatgctggtgcaaggatccatgagccatgaattcgtaaacca 164
Score = 44.1 bits (22), Expect = 0.033
Identities = 58/70 (82%)
Strand = Plus / Minus
Query: 662 atgcaggggctgcccatcagcagtgcaagggcgtgctctagagctgtcgtcaccttatcc 721
||||| ||||||||||||| | |||| ||||| | ||||||||||| || || |||||
Sbjct: 803 atgcatgggctgcccatcaactgtgcgagggcacgttctagagctgttgttactctatcc 744
Query: 722 atggaaggcc 731
||||| ||||
Sbjct: 743 atggatggcc 734
>gb|BF299460.1|BF299460 bd17-2 Poplar first strand cDNA Populus trichocarpa x Populus
deltoides cDNA similar to receptor protein kinase, mRNA
sequence
Length = 985
Score = 87.7 bits (44), Expect = 2e-015
Identities = 89/104 (85%)
Strand = Plus / Minus
Query: 1094 ttgtgatcctcatcaatcaatatgtttgacgacttgatgtcccggtgaattacaggaggg 1153
||||| || |||||||| | |||||||| ||||||||||| || |||||||| || |||
Sbjct: 104 ttgtgttcttcatcaatgagaatgtttgaagacttgatgtctcgatgaattacgggcggg 45
Query: 1154 caagcatagccatgcaagtactcaattcccctagcagcctgtac 1197
||||| || ||||||||||| |||||||||||||| || |||||
Sbjct: 44 caagcgtaaccatgcaagtattcaattcccctagctgcttgtac 1
Score = 60.0 bits (30), Expect = 6e-007
Identities = 150/190 (78%)
Strand = Plus / Minus
Query: 842 cctgctttgatcagaggtactgcccattcaacaatgttcccctcctcgaactgcatgtcg 901
|||||||||||||| || |||||||||||||| || || || || ||| | ||||| ||
Sbjct: 356 cctgctttgatcaggggaactgcccattcaactatatttccttcttcgtattgcatatct 297
Query: 902 atcgctttcctgccacttagtatctccaggagaacaaccccgaagctgtagacatcagat 961
|| || || | |||||| || || |||| ||| | || || ||||| || ||||| |||
Sbjct: 296 atggcctttcggccactgaggatttccaagagcaacacgccaaagctataaacatcggat 237
Query: 962 tttgtagtcaagtagtggagacggtagtactcagggtcaaggtagccaagagtccctgct 1021
|| || | | |||||| || | ||||||||||| ||||| ||||||||||| |||||
Sbjct: 236 ttggttgcgaggtagtgaagcctatagtactcaggatcaagatagccaagagttcctgca 177
Query: 1022 ggcagctcag 1031
||||||||||
Sbjct: 176 ggcagctcag 167
Score = 46.1 bits (23), Expect = 0.008
Identities = 80/99 (80%)
Strand = Plus / Minus
Query: 671 ctgcccatcagcagtgcaagggcgtgctctagagctgtcgtcaccttatccatggaaggc 730
||||||||||| |||||||||| | || | |||||| || || ||||||||||| |||
Sbjct: 527 ctgcccatcagttgtgcaagggcacgttccaaagctgttgttactttatccatggatggc 468
Query: 731 cgatctttacctcgcattctgacacacttacatgccaca 769
| || || || | ||||||||||||||| || ||||||
Sbjct: 467 ctttccttcccccccattctgacacacttgcaagccaca 429
>gb|BU834220.1|BU834220 T058D11 Populus apical shoot cDNA library Populus tremula x Populus
tremuloides cDNA 5 prime, mRNA sequence
Length = 312
Score = 54.0 bits (27), Expect = 3e-005
Identities = 48/55 (87%)
Strand = Plus / Minus
Query: 1157 gcatagccatgcaagtactcaattcccctagcagcctgtacagcaatggtgaccc 1211
||||| |||||||||||||| ||||||||||| || || || |||||||| ||||
Sbjct: 305 gcataaccatgcaagtactcgattcccctagctgcttggactgcaatggtaaccc 251
Score = 54.0 bits (27), Expect = 3e-005
Identities = 39/43 (90%)
Strand = Plus / Minus
Query: 1259 agatgctggtacagggatccatgagccatgaactcataaacca 1301
|||||||||| || |||||||||||||||||| || |||||||
Sbjct: 203 agatgctggtgcaaggatccatgagccatgaattcgtaaacca 161
>gb|DT492396.1|DT492396 WS02550.C21_J12 PT-MB-N-A-15 Populus trichocarpa cDNA clone
WS02550_J12 3', mRNA sequence
Length = 772
Score = 46.1 bits (23), Expect = 0.008
Identities = 41/47 (87%)
Strand = Plus / Plus
Query: 926 tccaggagaacaaccccgaagctgtagacatcagattttgtagtcaa 972
|||| |||||||||||| | ||||||||||| |||||||| |||||
Sbjct: 679 tccaagagaacaaccccataactgtagacatctgattttgttgtcaa 725
>gb|CV227498.1|CV227498 WS0167.B21_F17 PT-DX-A-7 Populus trichocarpa cDNA clone WS0167_F17
3', mRNA sequence
Length = 880
Score = 42.1 bits (21), Expect = 0.13
Identities = 36/41 (87%)
Strand = Plus / Plus
Query: 923 atctccaggagaacaaccccgaagctgtagacatcagattt 963
||||| |||||||||||||| ||||| || ||||| |||||
Sbjct: 776 atctcaaggagaacaacccccaagctataaacatctgattt 816
>gb|CV237060.1|CV237060 WS01226.B21.1_J14 PT-GT-FL-A-3 Populus trichocarpa cDNA clone
WS01226_J14 3', mRNA sequence
Length = 853
Score = 42.1 bits (21), Expect = 0.13
Identities = 36/41 (87%)
Strand = Plus / Plus
Query: 923 atctccaggagaacaaccccgaagctgtagacatcagattt 963
||||| |||||||||||||| ||||| || ||||| |||||
Sbjct: 812 atctcaaggagaacaaccccaaagctataaacatctgattt 852
>gb|CX654946.1|CX654946 PO01003A10 Poplar SC cDNA library Populus alba x Populus tremula
var. glandulosa cDNA clone PO01003A10 5', mRNA sequence
Length = 264
Score = 42.1 bits (21), Expect = 0.13
Identities = 36/41 (87%)
Strand = Plus / Minus
Query: 923 atctccaggagaacaaccccgaagctgtagacatcagattt 963
||||| ||||| ||||| || |||||||||||||| |||||
Sbjct: 50 atctcaaggaggacaacaccaaagctgtagacatctgattt 10
Database: Populus_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:49 PM
Number of letters in database: 203,408,664
Number of sequences in database: 369,679
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 333,547
Number of Sequences: 369679
Number of extensions: 333547
Number of successful extensions: 90329
Number of sequences better than 0.5: 7
Number of HSP's better than 0.5 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 90308
Number of HSP's gapped (non-prelim): 21
length of query: 3189
length of database: 203,408,664
effective HSP length: 20
effective length of query: 3169
effective length of database: 196,015,084
effective search space: 621171801196
effective search space used: 621171801196
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 21 (42.1 bits)