BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2643622.2.1
(1067 letters)
Database: Populus_nucl_with_EST.fasta
369,679 sequences; 203,408,664 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|BU866312.1|BU866312 S065C03 Populus imbibed seed cDNA li... 44 0.011
gb|AJ776528.1|AJ776528 AJ776528 Populus euphratica root 3-6... 42 0.043
gb|AI165143.1|AI165143 A076p09u Hybrid aspen plasmid librar... 40 0.17
gb|BU896193.1|BU896193 X037A01 Populus wood cDNA library Po... 40 0.17
gb|BU896728.1|BU896728 X044H01 Populus wood cDNA library Po... 40 0.17
gb|CF119044.1|CF119044 MTU10CS.P12.G06 Aspen stem cDNA Libr... 40 0.17
>gb|BU866312.1|BU866312 S065C03 Populus imbibed seed cDNA library Populus tremula cDNA 5
prime, mRNA sequence
Length = 626
Score = 44.1 bits (22), Expect = 0.011
Identities = 52/62 (83%)
Strand = Plus / Minus
Query: 587 agcatcagcggcgtcggcgggtgcaggcgcagggactccttgacgactgcctgcaggtaa 646
||||||||||| ||||| ||||||| | ||| || |||||||| || || |||||||||
Sbjct: 133 agcatcagcggtgtcggtgggtgcaacctcagcgattccttgactacagcttgcaggtaa 74
Query: 647 gg 648
||
Sbjct: 73 gg 72
>gb|AJ776528.1|AJ776528 AJ776528 Populus euphratica root 3-6 months Populus euphratica cDNA
clone P0000400014F03F1, mRNA sequence
Length = 471
Score = 42.1 bits (21), Expect = 0.043
Identities = 99/125 (79%)
Strand = Plus / Minus
Query: 725 tgcaccctggggttcctcagcagctccgccatcgcccactacaccgagatcaccgtcgtg 784
|||||||| |||||| | | |||||| ||||| ||||| | || ||||| | || |||
Sbjct: 391 tgcacccttgggttcttgatcagctctgccattgcccattctactgagattgcagttgtg 332
Query: 785 tccgtgccggcggtgatcatgtcccagaggaggcctatgacggtgtcgtcgctgaggtcg 844
||| |||| || || ||||||||||| ||||| || |||| ||||| || || ||||||
Sbjct: 331 tccatgcccgcagtaatcatgtcccaaaggagtccaatgattgtgtcttcactaaggtcg 272
Query: 845 tactt 849
|||||
Sbjct: 271 tactt 267
>gb|AI165143.1|AI165143 A076p09u Hybrid aspen plasmid library Populus tremula x Populus
tremuloides cDNA 5', mRNA sequence
Length = 361
Score = 40.1 bits (20), Expect = 0.17
Identities = 56/68 (82%)
Strand = Plus / Minus
Query: 782 gtgtccgtgccggcggtgatcatgtcccagaggaggcctatgacggtgtcgtcgctgagg 841
|||||| |||| || |||||||||||||| ||||| || |||| ||||| || || |||
Sbjct: 142 gtgtccatgcccgcagtgatcatgtcccaaaggagtccaatgattgtgtcttcactaagg 83
Query: 842 tcgtactt 849
|| |||||
Sbjct: 82 tcatactt 75
>gb|BU896193.1|BU896193 X037A01 Populus wood cDNA library Populus tremula x Populus
tremuloides cDNA 5 prime, mRNA sequence
Length = 556
Score = 40.1 bits (20), Expect = 0.17
Identities = 56/68 (82%)
Strand = Plus / Minus
Query: 782 gtgtccgtgccggcggtgatcatgtcccagaggaggcctatgacggtgtcgtcgctgagg 841
|||||| |||| || |||||||||||||| ||||| || |||| ||||| || || |||
Sbjct: 94 gtgtccatgcccgcagtgatcatgtcccaaaggagtccaatgattgtgtcttcactaagg 35
Query: 842 tcgtactt 849
|| |||||
Sbjct: 34 tcatactt 27
>gb|BU896728.1|BU896728 X044H01 Populus wood cDNA library Populus tremula x Populus
tremuloides cDNA 5 prime, mRNA sequence
Length = 600
Score = 40.1 bits (20), Expect = 0.17
Identities = 56/68 (82%)
Strand = Plus / Minus
Query: 782 gtgtccgtgccggcggtgatcatgtcccagaggaggcctatgacggtgtcgtcgctgagg 841
|||||| |||| || |||||||||||||| ||||| || |||| ||||| || || |||
Sbjct: 285 gtgtccatgcccgcagtgatcatgtcccaaaggagtccaatgattgtgtcttcactaagg 226
Query: 842 tcgtactt 849
|| |||||
Sbjct: 225 tcatactt 218
>gb|CF119044.1|CF119044 MTU10CS.P12.G06 Aspen stem cDNA Library Populus tremuloides cDNA,
mRNA sequence
Length = 777
Score = 40.1 bits (20), Expect = 0.17
Identities = 56/68 (82%)
Strand = Plus / Plus
Query: 782 gtgtccgtgccggcggtgatcatgtcccagaggaggcctatgacggtgtcgtcgctgagg 841
|||||| |||| || |||||||||||||| ||||| || |||| ||||| || || |||
Sbjct: 592 gtgtccatgcccgcagtgatcatgtcccaaaggagtccaatgattgtgtcttcactaagg 651
Query: 842 tcgtactt 849
|| |||||
Sbjct: 652 tcatactt 659
Database: Populus_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:49 PM
Number of letters in database: 203,408,664
Number of sequences in database: 369,679
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 65,477
Number of Sequences: 369679
Number of extensions: 65477
Number of successful extensions: 17285
Number of sequences better than 0.5: 6
Number of HSP's better than 0.5 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 17273
Number of HSP's gapped (non-prelim): 12
length of query: 1067
length of database: 203,408,664
effective HSP length: 19
effective length of query: 1048
effective length of database: 196,384,763
effective search space: 205811231624
effective search space used: 205811231624
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)