BLASTN 2.2.10 [Oct-19-2004]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 2643604.2.1
         (578 letters)

Database: Populus_nucl_with_EST.fasta 
           369,679 sequences; 203,408,664 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|CV232433.1|CV232433  WS0197.B21_J03 PT-DX-N-A-10 Populus ...    40   0.091
gb|DT482867.1|DT482867  WS02521.B21_A02 PT-MB-N-A-15 Populus...    40   0.091
gb|DT485334.1|DT485334  WS02527.B21_O22 PT-MB-N-A-15 Populus...    40   0.091
gb|DT507221.1|DT507221  WS02417.BR_K22 PTxD-ICC-N-A-14 Popul...    40   0.091
gb|DT511863.1|DT511863  WS02417.B21_K22 PTxD-ICC-N-A-14 Popu...    40   0.091
gb|DT515685.1|DT515685  WS02429.B21.1_D22 PTxD-ICC-N-A-14 Po...    40   0.091

>gb|CV232433.1|CV232433 WS0197.B21_J03 PT-DX-N-A-10 Populus trichocarpa cDNA clone
           WS0197_J03 3', mRNA sequence
          Length = 745

 Score = 40.1 bits (20), Expect = 0.091
 Identities = 44/52 (84%)
 Strand = Plus / Plus

                                                               
Query: 356 gcccagttcaggccttcaaagaagggatgccgcttaatctcagtggctcctc 407
           ||||| |||| ||||||||||||||| ||  |||| || |||||||| ||||
Sbjct: 324 gcccaattcacgccttcaaagaaggggtgttgctttatttcagtggcgcctc 375



>gb|DT482867.1|DT482867 WS02521.B21_A02 PT-MB-N-A-15 Populus trichocarpa cDNA clone
           WS02521_A02 3', mRNA sequence
          Length = 749

 Score = 40.1 bits (20), Expect = 0.091
 Identities = 29/32 (90%)
 Strand = Plus / Plus

                                           
Query: 368 ccttcaaagaagggatgccgcttaatctcagt 399
           |||||||||||||||||  ||||||| |||||
Sbjct: 319 ccttcaaagaagggatgttgcttaatttcagt 350



>gb|DT485334.1|DT485334 WS02527.B21_O22 PT-MB-N-A-15 Populus trichocarpa cDNA clone
           WS02527_O22 3', mRNA sequence
          Length = 904

 Score = 40.1 bits (20), Expect = 0.091
 Identities = 44/52 (84%)
 Strand = Plus / Plus

                                                               
Query: 356 gcccagttcaggccttcaaagaagggatgccgcttaatctcagtggctcctc 407
           ||||| |||| ||||||||||||||| ||  |||| || |||||||| ||||
Sbjct: 276 gcccaattcacgccttcaaagaaggggtgttgctttatttcagtggcgcctc 327



>gb|DT507221.1|DT507221 WS02417.BR_K22 PTxD-ICC-N-A-14 Populus trichocarpa x Populus
           deltoides cDNA clone WS02417_K22 5', mRNA sequence
          Length = 644

 Score = 40.1 bits (20), Expect = 0.091
 Identities = 44/52 (84%)
 Strand = Plus / Minus

                                                               
Query: 356 gcccagttcaggccttcaaagaagggatgccgcttaatctcagtggctcctc 407
           ||||| |||| ||||||||||||||| ||  |||| || |||||||| ||||
Sbjct: 308 gcccaattcacgccttcaaagaaggggtgttgctttatttcagtggcgcctc 257



>gb|DT511863.1|DT511863 WS02417.B21_K22 PTxD-ICC-N-A-14 Populus trichocarpa x Populus
           deltoides cDNA clone WS02417_K22 3', mRNA sequence
          Length = 644

 Score = 40.1 bits (20), Expect = 0.091
 Identities = 44/52 (84%)
 Strand = Plus / Plus

                                                               
Query: 356 gcccagttcaggccttcaaagaagggatgccgcttaatctcagtggctcctc 407
           ||||| |||| ||||||||||||||| ||  |||| || |||||||| ||||
Sbjct: 337 gcccaattcacgccttcaaagaaggggtgttgctttatttcagtggcgcctc 388



>gb|DT515685.1|DT515685 WS02429.B21.1_D22 PTxD-ICC-N-A-14 Populus trichocarpa x Populus
           deltoides cDNA clone WS02429_D22 3', mRNA sequence
          Length = 894

 Score = 40.1 bits (20), Expect = 0.091
 Identities = 44/52 (84%)
 Strand = Plus / Plus

                                                               
Query: 356 gcccagttcaggccttcaaagaagggatgccgcttaatctcagtggctcctc 407
           ||||| |||| ||||||||||||||| ||  |||| || |||||||| ||||
Sbjct: 270 gcccaattcacgccttcaaagaaggggtgttgctttatttcagtggcgcctc 321



  Database: Populus_nucl_with_EST.fasta
    Posted date:  Feb 7, 2006  2:49 PM
  Number of letters in database: 203,408,664
  Number of sequences in database:  369,679
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 61,207
Number of Sequences: 369679
Number of extensions: 61207
Number of successful extensions: 16753
Number of sequences better than  0.5: 6
Number of HSP's better than  0.5 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 16747
Number of HSP's gapped (non-prelim): 6
length of query: 578
length of database: 203,408,664
effective HSP length: 19
effective length of query: 559
effective length of database: 196,384,763
effective search space: 109779082517
effective search space used: 109779082517
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)