BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2619325.2.1
(1403 letters)
Database: Populus_nucl_with_EST.fasta
369,679 sequences; 203,408,664 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|BH860684.1|BH860684 ORNL182 Poplar BAC Library Populus t... 46 0.004
gb|DV465234.1|DV465234 MTUNUL1.P36.H10 NUL Populus fremonti... 42 0.057
gb|CX654037.1|CX654037 PO02012B04 Poplar SC cDNA library Po... 40 0.22
gb|CX654776.1|CX654776 PO02059E07 Poplar SC cDNA library Po... 40 0.22
gb|CX657110.1|CX657110 PO02060D11 Poplar SC cDNA library Po... 40 0.22
gb|CX658049.1|CX658049 PO01008F12 Poplar SC cDNA library Po... 40 0.22
gb|CX658372.1|CX658372 PO01034D03 Poplar SC cDNA library Po... 40 0.22
gb|CX659207.1|CX659207 PO01027G10 Poplar SC cDNA library Po... 40 0.22
gb|CX659671.1|CX659671 PO01033E11 Poplar SC cDNA library Po... 40 0.22
gb|AY953377.1| Populus alba x Populus tremula var. glandulo... 40 0.22
>gb|BH860684.1|BH860684 ORNL182 Poplar BAC Library Populus trichocarpa genomic, DNA sequence
Length = 782
Score = 46.1 bits (23), Expect = 0.004
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 1311 ttctttggtttgtgtttctatatttgg 1337
||||||||||| |||||||||||||||
Sbjct: 681 ttctttggtttatgtttctatatttgg 707
>gb|DV465234.1|DV465234 MTUNUL1.P36.H10 NUL Populus fremontii x Populus angustifolia cDNA,
mRNA sequence
Length = 933
Score = 42.1 bits (21), Expect = 0.057
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 448 cgtctcctgcgccgacatcatcgcc 472
||||||||||||||||||| |||||
Sbjct: 483 cgtctcctgcgccgacatcctcgcc 507
>gb|CX654037.1|CX654037 PO02012B04 Poplar SC cDNA library Populus alba x Populus tremula
var. glandulosa cDNA clone PO02012B04 5', mRNA sequence
Length = 654
Score = 40.1 bits (20), Expect = 0.22
Identities = 26/28 (92%)
Strand = Plus / Plus
Query: 273 tccgcatgctcttccatgactgcttcgt 300
||||| || |||||||||||||||||||
Sbjct: 251 tccgcctgttcttccatgactgcttcgt 278
>gb|CX654776.1|CX654776 PO02059E07 Poplar SC cDNA library Populus alba x Populus tremula
var. glandulosa cDNA clone PO02059E07 5', mRNA sequence
Length = 536
Score = 40.1 bits (20), Expect = 0.22
Identities = 26/28 (92%)
Strand = Plus / Plus
Query: 273 tccgcatgctcttccatgactgcttcgt 300
||||| || |||||||||||||||||||
Sbjct: 248 tccgcctgttcttccatgactgcttcgt 275
>gb|CX657110.1|CX657110 PO02060D11 Poplar SC cDNA library Populus alba x Populus tremula
var. glandulosa cDNA clone PO02060D11 5', mRNA sequence
Length = 654
Score = 40.1 bits (20), Expect = 0.22
Identities = 26/28 (92%)
Strand = Plus / Plus
Query: 273 tccgcatgctcttccatgactgcttcgt 300
||||| || |||||||||||||||||||
Sbjct: 248 tccgcctgttcttccatgactgcttcgt 275
>gb|CX658049.1|CX658049 PO01008F12 Poplar SC cDNA library Populus alba x Populus tremula
var. glandulosa cDNA clone PO01008F12 5', mRNA sequence
Length = 441
Score = 40.1 bits (20), Expect = 0.22
Identities = 26/28 (92%)
Strand = Plus / Plus
Query: 273 tccgcatgctcttccatgactgcttcgt 300
||||| || |||||||||||||||||||
Sbjct: 13 tccgcctgttcttccatgactgcttcgt 40
>gb|CX658372.1|CX658372 PO01034D03 Poplar SC cDNA library Populus alba x Populus tremula
var. glandulosa cDNA clone PO01034D03 5', mRNA sequence
Length = 670
Score = 40.1 bits (20), Expect = 0.22
Identities = 26/28 (92%)
Strand = Plus / Plus
Query: 273 tccgcatgctcttccatgactgcttcgt 300
||||| || |||||||||||||||||||
Sbjct: 13 tccgcctgttcttccatgactgcttcgt 40
>gb|CX659207.1|CX659207 PO01027G10 Poplar SC cDNA library Populus alba x Populus tremula
var. glandulosa cDNA clone PO01027G10 5', mRNA sequence
Length = 709
Score = 40.1 bits (20), Expect = 0.22
Identities = 26/28 (92%)
Strand = Plus / Plus
Query: 273 tccgcatgctcttccatgactgcttcgt 300
||||| || |||||||||||||||||||
Sbjct: 240 tccgcctgttcttccatgactgcttcgt 267
>gb|CX659671.1|CX659671 PO01033E11 Poplar SC cDNA library Populus alba x Populus tremula
var. glandulosa cDNA clone PO01033E11 5', mRNA sequence
Length = 709
Score = 40.1 bits (20), Expect = 0.22
Identities = 26/28 (92%)
Strand = Plus / Plus
Query: 273 tccgcatgctcttccatgactgcttcgt 300
||||| || |||||||||||||||||||
Sbjct: 12 tccgcctgttcttccatgactgcttcgt 39
>gb|AY953377.1| Populus alba x Populus tremula var. glandulosa peroxidase mRNA,
complete cds
Length = 1225
Score = 40.1 bits (20), Expect = 0.22
Identities = 26/28 (92%)
Strand = Plus / Plus
Query: 273 tccgcatgctcttccatgactgcttcgt 300
||||| || |||||||||||||||||||
Sbjct: 248 tccgcctgttcttccatgactgcttcgt 275
Database: Populus_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:49 PM
Number of letters in database: 203,408,664
Number of sequences in database: 369,679
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 140,085
Number of Sequences: 369679
Number of extensions: 140085
Number of successful extensions: 35386
Number of sequences better than 0.5: 10
Number of HSP's better than 0.5 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 35366
Number of HSP's gapped (non-prelim): 20
length of query: 1403
length of database: 203,408,664
effective HSP length: 19
effective length of query: 1384
effective length of database: 196,384,763
effective search space: 271796511992
effective search space used: 271796511992
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)