BLASTN 2.2.10 [Oct-19-2004]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 2594433.2.1
         (766 letters)

Database: Populus_nucl_with_EST.fasta 
           369,679 sequences; 203,408,664 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|BU831998.1|BU831998  T028C05 Populus apical shoot cDNA li...    44   0.008
gb|DN489856.1|DN489856  T086B12.3pR Populus shoot meristem c...    44   0.008
gb|DN499780.1|DN499780  T086B12.5pR Populus shoot meristem c...    44   0.008
gb|BU836407.1|BU836407  T086B12 Populus apical shoot cDNA li...    42   0.031

>gb|BU831998.1|BU831998 T028C05 Populus apical shoot cDNA library Populus tremula x Populus
           tremuloides cDNA 5 prime, mRNA sequence
          Length = 653

 Score = 44.1 bits (22), Expect = 0.008
 Identities = 40/46 (86%)
 Strand = Plus / Minus

                                                         
Query: 690 ttgcaggtcttgcaagcacggtaccacatgttctggtcaggcttga 735
           ||||| ||||||||||| || ||||||||  |||||||||| ||||
Sbjct: 242 ttgcacgtcttgcaagcccgataccacattgtctggtcaggtttga 197



>gb|DN489856.1|DN489856 T086B12.3pR Populus shoot meristem cDNA library Populus tremula x
           Populus tremuloides cDNA clone T086B12 3', mRNA sequence
          Length = 788

 Score = 44.1 bits (22), Expect = 0.008
 Identities = 40/46 (86%)
 Strand = Plus / Plus

                                                         
Query: 690 ttgcaggtcttgcaagcacggtaccacatgttctggtcaggcttga 735
           ||||| ||||||||||| || ||||||||  |||||||||| ||||
Sbjct: 607 ttgcacgtcttgcaagcccgataccacattgtctggtcaggtttga 652



>gb|DN499780.1|DN499780 T086B12.5pR Populus shoot meristem cDNA library Populus tremula x
           Populus tremuloides cDNA clone T086B12 5', mRNA sequence
          Length = 752

 Score = 44.1 bits (22), Expect = 0.008
 Identities = 40/46 (86%)
 Strand = Plus / Minus

                                                         
Query: 690 ttgcaggtcttgcaagcacggtaccacatgttctggtcaggcttga 735
           ||||| ||||||||||| || ||||||||  |||||||||| ||||
Sbjct: 259 ttgcacgtcttgcaagcccgataccacattgtctggtcaggtttga 214



>gb|BU836407.1|BU836407 T086B12 Populus apical shoot cDNA library Populus tremula x Populus
           tremuloides cDNA 5 prime, mRNA sequence
          Length = 351

 Score = 42.1 bits (21), Expect = 0.031
 Identities = 36/41 (87%)
 Strand = Plus / Minus

                                                    
Query: 690 ttgcaggtcttgcaagcacggtaccacatgttctggtcagg 730
           ||||| ||||||||||| || ||||||||  ||||||||||
Sbjct: 159 ttgcacgtcttgcaagcccgataccacattgtctggtcagg 119



  Database: Populus_nucl_with_EST.fasta
    Posted date:  Feb 7, 2006  2:49 PM
  Number of letters in database: 203,408,664
  Number of sequences in database:  369,679
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 81,014
Number of Sequences: 369679
Number of extensions: 81014
Number of successful extensions: 20746
Number of sequences better than  0.5: 4
Number of HSP's better than  0.5 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 20739
Number of HSP's gapped (non-prelim): 7
length of query: 766
length of database: 203,408,664
effective HSP length: 19
effective length of query: 747
effective length of database: 196,384,763
effective search space: 146699417961
effective search space used: 146699417961
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)