BLASTN 2.2.10 [Oct-19-2004]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 2594405.2.1
         (637 letters)

Database: Populus_nucl_with_EST.fasta 
           369,679 sequences; 203,408,664 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|CV244122.1|CV244122  WS0253.B21_M19 PT-MB-N-A-15 Populus ...    40   0.10 
gb|BU895901.1|BU895901  X032G04 Populus wood cDNA library Po...    38   0.40 
gb|CK087762.1|CK087762  A020P21.3pR Hybrid aspen plasmid lib...    38   0.40 
gb|AY935501.1|  Populus tremula x Populus tremuloides putati...    38   0.40 

>gb|CV244122.1|CV244122 WS0253.B21_M19 PT-MB-N-A-15 Populus trichocarpa cDNA clone
           WS0253_M19 3', mRNA sequence
          Length = 807

 Score = 40.1 bits (20), Expect = 0.10
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 434 gcaggatgtgcaaatgcttc 453
           ||||||||||||||||||||
Sbjct: 725 gcaggatgtgcaaatgcttc 744



>gb|BU895901.1|BU895901 X032G04 Populus wood cDNA library Populus tremula x Populus
           tremuloides cDNA 5 prime, mRNA sequence
          Length = 621

 Score = 38.2 bits (19), Expect = 0.40
 Identities = 25/27 (92%)
 Strand = Plus / Minus

                                      
Query: 304 cagccactcttgtttgagagcaaggta 330
           ||||||||||| ||| |||||||||||
Sbjct: 513 cagccactcttttttaagagcaaggta 487



>gb|CK087762.1|CK087762 A020P21.3pR Hybrid aspen plasmid library Populus tremula x Populus
           tremuloides cDNA clone A020P21 3', mRNA sequence
          Length = 680

 Score = 38.2 bits (19), Expect = 0.40
 Identities = 25/27 (92%)
 Strand = Plus / Plus

                                      
Query: 304 cagccactcttgtttgagagcaaggta 330
           ||||||||||| ||| |||||||||||
Sbjct: 353 cagccactcttttttaagagcaaggta 379



>gb|AY935501.1| Populus tremula x Populus tremuloides putative endo-1,4-beta-xylanase
            mRNA, complete cds
          Length = 3001

 Score = 38.2 bits (19), Expect = 0.40
 Identities = 25/27 (92%)
 Strand = Plus / Minus

                                       
Query: 304  cagccactcttgtttgagagcaaggta 330
            ||||||||||| ||| |||||||||||
Sbjct: 2664 cagccactcttttttaagagcaaggta 2638



  Database: Populus_nucl_with_EST.fasta
    Posted date:  Feb 7, 2006  2:49 PM
  Number of letters in database: 203,408,664
  Number of sequences in database:  369,679
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 53,310
Number of Sequences: 369679
Number of extensions: 53310
Number of successful extensions: 13716
Number of sequences better than  0.5: 4
Number of HSP's better than  0.5 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 13712
Number of HSP's gapped (non-prelim): 4
length of query: 637
length of database: 203,408,664
effective HSP length: 19
effective length of query: 618
effective length of database: 196,384,763
effective search space: 121365783534
effective search space used: 121365783534
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)