BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2594130.2.1
(2756 letters)
Database: Populus_nucl_with_EST.fasta
369,679 sequences; 203,408,664 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CX169657.1|CX169657 E08_69-98_10.ab1 leaf inoculated wit... 248 1e-063
gb|BI069710.1|BI069710 C006P40U Populus strain T89 leaves P... 204 1e-050
gb|BI072226.1|BI072226 C071P70U Populus strain T89 leaves P... 172 5e-041
gb|CN518098.1|CN518098 GQ0093.B3_O24 GQ009 Populus trichoca... 165 1e-038
gb|AJ768076.1|AJ768076 AJ768076 Populus euphratica leaf adu... 165 1e-038
gb|CK100170.1|CK100170 C006P40.5pR Populus strain T89 leave... 157 3e-036
gb|CN518115.1|CN518115 GQ0094.B3_G01 GQ009 Populus trichoca... 129 6e-028
gb|BI127636.1|BI127636 G063P64Y Populus cambium cDNA librar... 105 9e-021
gb|CK102082.1|CK102082 G063P64.5pR Populus tension wood cDN... 90 5e-016
gb|BI072151.1|BI072151 C070P27U Populus strain T89 leaves P... 84 3e-014
gb|AJ772709.1|AJ772709 AJ772709 Populus euphratica shoot in... 74 3e-011
gb|DT488378.1|DT488378 WS02536.B21_E08 PT-MB-N-A-15 Populus... 70 5e-010
gb|BU820207.1|BU820207 UA52DPD12 Populus tremula cambium cD... 66 8e-009
gb|CV130489.1|CV130489 X9P04a01 Populus stem seasonal libra... 64 3e-008
gb|BI135829.1|BI135829 F059P04Y Populus flower cDNA library... 52 1e-004
gb|BI136479.1|BI136479 F069P04Y Populus flower cDNA library... 52 1e-004
gb|BI136596.1|BI136596 F070P49Y Populus flower cDNA library... 52 1e-004
gb|BI136597.1|BI136597 F070P51Y Populus flower cDNA library... 52 1e-004
gb|BI137707.1|BI137707 F092P17Y Populus flower cDNA library... 52 1e-004
gb|BU869509.1|BU869509 M130H07 Populus flower cDNA library ... 52 1e-004
gb|CK318876.1|CK318876 X9P04d02 Populus stem seasonal libra... 52 1e-004
gb|AJ769923.1|AJ769923 AJ769923 Populus euphratica leaf 3-6... 52 1e-004
gb|DT472445.1|DT472445 WS01226.BR.1_L10 PT-GT-FL-A-3 Populu... 52 1e-004
gb|BU881700.1|BU881700 UM66TD01 Populus flower cDNA library... 46 0.007
gb|BU881789.1|BU881789 UM67TE08 Populus flower cDNA library... 46 0.007
gb|CF227503.1|CF227503 PtaD6G3G0313 Poplar cDNA library fro... 46 0.007
gb|CN518255.1|CN518255 GQ0094.B3_I15 GQ009 Populus trichoca... 46 0.007
gb|CN520234.1|CN520234 GQ0105.B3_A02 GQ010 Populus trichoca... 46 0.007
gb|CK089403.1|CK089403 C006P40.3pR Populus strain T89 leave... 40 0.44
>gb|CX169657.1|CX169657 E08_69-98_10.ab1 leaf inoculated with Marssonia pathogen of Populus
deltoides Populus deltoides cDNA, mRNA sequence
Length = 625
Score = 248 bits (125), Expect = 1e-063
Identities = 353/429 (82%)
Strand = Plus / Plus
Query: 1531 cattggcgaagatgtcagcggaatgcctacattttgtatccctgtccaagatggtggtgt 1590
|||||| ||||||||||| |||||||| ||||| || || ||||||||||||||||| ||
Sbjct: 116 cattggtgaagatgtcagtggaatgccaacattctgcattcctgtccaagatggtggcgt 175
Query: 1591 tggttttgattatcgtcttcatatggctgtcccagacaaatggattgaacttctgaagca 1650
|| ||||||||||| || || ||||| | | || ||||||||||| ||||| || |
Sbjct: 176 gggatttgattatcgcctccacatggccattgctgataaatggattgagcttctccagaa 235
Query: 1651 aagtgacgaatattgggaaatgggtgacatcgtgcacaccttaacaaatagaaggtggct 1710
| || ||| | ||| |||||||||||| || ||||| | || || |||||||||||
Sbjct: 236 gaaggatgaagaatggagaatgggtgacattgtacacactctcactaacagaaggtggct 295
Query: 1711 tgaaaagtgtgtcacttattgtgaaagtcatgatcaagctcttgttggtgacaagacaat 1770
|||||||| || | ||| |||||||||||| ||||||||||||||||||||||| ||
Sbjct: 296 ggaaaagtgcgtttcatatgctgaaagtcatgaccaagctcttgttggtgacaagaccat 355
Query: 1771 tgcattctggttgatggataaggatatgtatgatttcatggctctggacaggccttcaac 1830
|||||||||||||||||| ||||||||||| || ||||||||||| || || || |||||
Sbjct: 356 tgcattctggttgatggacaaggatatgtacgacttcatggctcttgatagaccatcaac 415
Query: 1831 gcctcgcatcgatcgtgggatagcattacataaaatgattaggcttgtcacaatgggttt 1890
|||| | |||||||| |||||||| || |||||||| ||||| | || ||||||||
Sbjct: 416 tcctcttgtagatcgtggaatagcattgcacaaaatgatccggcttattaccatgggttt 475
Query: 1891 aggaggtgaaggctatctaaatttcatgggaaatgagtttgggcatcctgaatggataga 1950
|||||| ||||| ||| | ||||| ||||||||||||||||| || ||||| ||||| ||
Sbjct: 476 aggaggagaaggatatttgaattttatgggaaatgagtttggacaccctgagtggattga 535
Query: 1951 ttttccaag 1959
||| |||||
Sbjct: 536 tttcccaag 544
>gb|BI069710.1|BI069710 C006P40U Populus strain T89 leaves Populus tremula x Populus
tremuloides cDNA, mRNA sequence
Length = 372
Score = 204 bits (103), Expect = 1e-050
Identities = 244/291 (83%)
Strand = Plus / Plus
Query: 1669 aatgggtgacatcgtgcacaccttaacaaatagaaggtggcttgaaaagtgtgtcactta 1728
|||||||||||| || ||||| | || || ||||||||||| |||||||| || | ||
Sbjct: 12 aatgggtgacattgtacacactctcactaacagaaggtggctggaaaagtgcgtttcata 71
Query: 1729 ttgtgaaagtcatgatcaagctcttgttggtgacaagacaattgcattctggttgatgga 1788
| |||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 72 tgctgaaagtcatgaccaagctcttgttggtgacaagaccattgcattctggttgatgga 131
Query: 1789 taaggatatgtatgatttcatggctctggacaggccttcaacgcctcgcatcgatcgtgg 1848
||||||||||| || ||||||||||| || || || ||||| |||| | ||||||||
Sbjct: 132 caaggatatgtacgacttcatggctcttgatagaccatcaactcctcttgtagatcgtgg 191
Query: 1849 gatagcattacataaaatgattaggcttgtcacaatgggtttaggaggtgaaggctatct 1908
|||||||| || |||||||| ||||| | || ||||||||||||| ||||| ||| |
Sbjct: 192 aatagcattgcacaaaatgatccggcttattaccttgggtttaggaggagaaggatattt 251
Query: 1909 aaatttcatgggaaatgagtttgggcatcctgaatggatagattttccaag 1959
||||| ||||||||||||||||| || ||||| ||||| ||||| |||||
Sbjct: 252 gaattttatgggaaatgagtttggacaccctgagtggattgatttcccaag 302
>gb|BI072226.1|BI072226 C071P70U Populus strain T89 leaves Populus tremula x Populus
tremuloides cDNA, mRNA sequence
Length = 279
Score = 172 bits (87), Expect = 5e-041
Identities = 183/215 (85%)
Strand = Plus / Plus
Query: 1745 caagctcttgttggtgacaagacaattgcattctggttgatggataaggatatgtatgat 1804
||||||||||||||||||||||| |||||||||||||||||||| ||||||||||| ||
Sbjct: 4 caagctcttgttggtgacaagaccattgcattctggttgatggacaaggatatgtacgac 63
Query: 1805 ttcatggctctggacaggccttcaacgcctcgcatcgatcgtgggatagcattacataaa 1864
||||||||||| || || || ||||| |||| | |||||||| |||||||| || |||
Sbjct: 64 ttcatggctcttgatagaccatcaactcctcttgtagatcgtggaatagcattgcacaaa 123
Query: 1865 atgattaggcttgtcacaatgggtttaggaggtgaaggctatctaaatttcatgggaaat 1924
||||| ||||| | || ||||||||||||| ||||| ||| | ||||| |||||||||
Sbjct: 124 atgatccggcttattaccttgggtttaggaggagaaggatatttgaattttatgggaaat 183
Query: 1925 gagtttgggcatcctgaatggatagattttccaag 1959
|||||||| || ||||| ||||| ||||| |||||
Sbjct: 184 gagtttggacaccctgagtggattgatttcccaag 218
>gb|CN518098.1|CN518098 GQ0093.B3_O24 GQ009 Populus trichocarpa x Populus deltoides cDNA
clone GQ0093_O24 5', mRNA sequence
Length = 530
Score = 165 bits (83), Expect = 1e-038
Identities = 234/285 (82%)
Strand = Plus / Plus
Query: 1531 cattggcgaagatgtcagcggaatgcctacattttgtatccctgtccaagatggtggtgt 1590
|||||| ||||||||||| |||||||| ||||| || || ||||||||||||||||| ||
Sbjct: 189 cattggtgaagatgtcagtggaatgccaacattctgcattcctgtccaagatggtggcgt 248
Query: 1591 tggttttgattatcgtcttcatatggctgtcccagacaaatggattgaacttctgaagca 1650
|| ||||||||||| || || ||||| | | || ||||||||||| ||||| || |
Sbjct: 249 gggatttgattatcgcctccacatggccattgctgataaatggattgagcttctccagaa 308
Query: 1651 aagtgacgaatattgggaaatgggtgacatcgtgcacaccttaacaaatagaaggtggct 1710
| || ||| | ||| |||||||||||| || ||||| | || || |||||||||||
Sbjct: 309 gaaggatgaagaatggagaatgggtgacattgtacacactctcactaacagaaggtggct 368
Query: 1711 tgaaaagtgtgtcacttattgtgaaagtcatgatcaagctcttgttggtgacaagacaat 1770
|||||||| || | ||| |||||||||||| ||||||||||||||||||||||| ||
Sbjct: 369 ggaaaagtgcgtttcatatgctgaaagtcatgaccaagctcttgttggtgacaagaccat 428
Query: 1771 tgcattctggttgatggataaggatatgtatgatttcatggctct 1815
|||||||||||||||||| || ||||||| || |||||||||||
Sbjct: 429 tgcattctggttgatggacaannatatgtacgacttcatggctct 473
Score = 52.0 bits (26), Expect = 1e-004
Identities = 53/62 (85%)
Strand = Plus / Plus
Query: 1346 gaatataaatttgatgggtttcgatttgatggggtgacctccatgatgtatactcaccat 1405
||||| || ||||||||||| |||||||||| ||||| || |||||||| || ||||||
Sbjct: 4 gaatacaagtttgatgggttcagatttgatggtgtgacttcgatgatgtacacccaccat 63
Query: 1406 gg 1407
||
Sbjct: 64 gg 65
>gb|AJ768076.1|AJ768076 AJ768076 Populus euphratica leaf adult Populus euphratica cDNA clone
P0000100013G12F1, mRNA sequence
Length = 666
Score = 165 bits (83), Expect = 1e-038
Identities = 209/251 (83%)
Strand = Plus / Plus
Query: 1157 atggatattgttcatagtcattcatcaaataataccttggatggtttgaatggtttcgat 1216
|||||||||||||| || ||| |||| || ||||| ||||||||||||||| ||||||
Sbjct: 380 atggatattgttcacagccatgcatcgaacaatactttggatggtttgaatatgttcgat 439
Query: 1217 ggcaccgatacacattacttccatggtggtccacgaggccatcattggatgtgggattct 1276
|| || |||| || |||||||| |||| |||| || ||||||||||||||||| |||
Sbjct: 440 ggaactgataatcactacttccactctggttcacggggacatcattggatgtgggactct 499
Query: 1277 cgcctattcaattatgggagttgggaagttttgagatttctattgtcaaatgcgagatgg 1336
||||| ||||| ||||| || |||||||| |||| ||||| | |||||||| ||||||
Sbjct: 500 cgccttttcaactatggcagctgggaagtactgaggtttcttctttcaaatgcaagatgg 559
Query: 1337 tggcttgaagaatataaatttgatgggtttcgatttgatggggtgacctccatgatgtat 1396
||||| || |||||||| ||||||||||| |||||||||| ||||| || ||||||||
Sbjct: 560 tggctggatgaatataagtttgatgggttcagatttgatggtgtgacttcgatgatgtac 619
Query: 1397 actcaccatgg 1407
|| ||||||||
Sbjct: 620 acccaccatgg 630
Score = 121 bits (61), Expect = 2e-025
Identities = 217/269 (80%)
Strand = Plus / Plus
Query: 794 caggctccaggtgaaataccatacaacggtatatattatgacccacctgaagaggagaaa 853
||||||||||| ||||| |||||||| || || || ||||| |||||||| ||||| ||
Sbjct: 17 caggctccaggagaaatcccatacaatggcatttactatgatccacctgaggaggaaaag 76
Query: 854 tatgtattcaaacaccctcaacctaagcggcccaagtcactgcggatatatgaatcacat 913
||| |||||||||| |||||||| ||| | || |||||||| |||| |||||| | |||
Sbjct: 77 tatatattcaaacatcctcaaccaaagagaccaaagtcacttaggatttatgaagctcat 136
Query: 914 gttggaatgagtagcccggaaccaaagataaatacatatgctaacttcagagatgaggtg 973
|| ||||||||||| |||| ||| || || |||||||| ||||| |||||||| ||
Sbjct: 137 gtcggaatgagtagtacggagccattaatcaacacatatgccaactttagagatgatttg 196
Query: 974 cttccaagaattaaaaagcttggatacaatgcagtacagataatggcaatccaggaacac 1033
||||| | || ||||| ||||| || ||||| || ||||| ||||| || || || ||
Sbjct: 197 cttcctcggatcaaaaaacttggttataatgctgttcagattatggctattcaagagcat 256
Query: 1034 tcttattatgcaagctttgggtaccatgt 1062
|| |||||||| || ||||||||||||||
Sbjct: 257 tcatattatgctagttttgggtaccatgt 285
>gb|CK100170.1|CK100170 C006P40.5pR Populus strain T89 leaves Populus tremula x Populus
tremuloides cDNA clone C006P40 5', mRNA sequence
Length = 508
Score = 157 bits (79), Expect = 3e-036
Identities = 245/295 (83%), Gaps = 4/295 (1%)
Strand = Plus / Plus
Query: 1669 aatgggtgacatcgtgcacacct-taacaaatagaaggtggcttgaaaagtgtgtcactt 1727
|||||||||||| || ||||| | | || || ||||||||||| |||||||| || | |
Sbjct: 1 aatgggtgacattgtacacacgtctcactaacagaaggtggctggaaaagtgcgtttcat 60
Query: 1728 attgtgaaagtcatgatcaagctcttgttggtgacaagacaattgcattctggttgatgg 1787
|| |||||||||||| ||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 61 atgctgaaagtcatgaccaagctcttgttggtgacaagaccattgcattctggttgatgg 120
Query: 1788 ataaggatatgtatgatttcatggctctggacaggccttcaacgcctcgcatcgatcgtg 1847
| ||||||||||| || ||||||||||| || || || ||||| |||| | |||||||
Sbjct: 121 acaaggatatgtacgacttcatggctcttgatagaccatcaactcctcttgtagatcgtg 180
Query: 1848 ggatagcattacataaaatgattaggcttgtca-caatg-ggtttaggaggtgaaggcta 1905
| |||||||| || |||||||| ||||| | | | || ||||||||||| ||||| ||
Sbjct: 181 gaatagcattgcacaaaatgatccggcttattacctctgcggtttaggaggagaaggata 240
Query: 1906 tct-aaatttcatgggaaatgagtttgggcatcctgaatggatagattttccaag 1959
| | ||||| ||||||||||||||||| || ||||| ||||| ||||| |||||
Sbjct: 241 tttcgaattttatgggaaatgagtttggacaccctgagtggattgatttcccaag 295
Score = 77.8 bits (39), Expect = 2e-012
Identities = 119/143 (83%), Gaps = 2/143 (1%)
Strand = Plus / Plus
Query: 2014 tgataaatgccg-ccgtagatttgacctt-ggagatgcagattatcttagatatcgtggt 2071
|||||||||||| |||||||||||| || || |||||||||||||| ||||||| |||
Sbjct: 350 tgataaatgccggccgtagatttgatctgcggggatgcagattatctaagatatcatgga 409
Query: 2072 atgcaagagtttgaccaggcaatgcagcaccttgagggaaaatatgaattcatgacatct 2131
||||||| || || |||||||||||||| |||| | || |||| ||||||||||||
Sbjct: 410 ctgcaagaattcgatcaggcaatgcagcatattgaagaaatctatggtttcatgacatct 469
Query: 2132 gatcactcatatgtatcacggaa 2154
|| ||| |||| ||||||||||
Sbjct: 470 gagcaccaatatatatcacggaa 492
>gb|CN518115.1|CN518115 GQ0094.B3_G01 GQ009 Populus trichocarpa x Populus deltoides cDNA
clone GQ0094_G01 5', mRNA sequence
Length = 480
Score = 129 bits (65), Expect = 6e-028
Identities = 207/255 (81%)
Strand = Plus / Plus
Query: 1531 cattggcgaagatgtcagcggaatgcctacattttgtatccctgtccaagatggtggtgt 1590
|||||| ||||||||||| |||||||| ||||| || || ||||||||||||||||| ||
Sbjct: 189 cattggtgaagatgtcagtggaatgccaacattctgcattcctgtccaagatggtggcgt 248
Query: 1591 tggttttgattatcgtcttcatatggctgtcccagacaaatggattgaacttctgaagca 1650
|| ||||||||||| || || ||||| | | || ||||||||||| ||||| || |
Sbjct: 249 gggatttgattatcgcctccacatggccattgctgataaatggattgagcttctccagaa 308
Query: 1651 aagtgacgaatattgggaaatgggtgacatcgtgcacaccttaacaaatagaaggtggct 1710
| || ||| | ||| |||||||||||| || ||||| | || || |||||||||||
Sbjct: 309 gaaggatgaagaatggagaatgggtgacattgtacacactctcactaacagaaggtggct 368
Query: 1711 tgaaaagtgtgtcacttattgtgaaagtcatgatcaagctcttgttggtgacaagacaat 1770
|||||||| || | ||| |||||||||||| |||||||||||||||||| ||| ||
Sbjct: 369 ggaaaagtgcgtttcatatgctgaaagtcatgaccaagctcttgttggtgacnngaccat 428
Query: 1771 tgcattctggttgat 1785
|||||||||||||||
Sbjct: 429 tgcattctggttgat 443
Score = 52.0 bits (26), Expect = 1e-004
Identities = 53/62 (85%)
Strand = Plus / Plus
Query: 1346 gaatataaatttgatgggtttcgatttgatggggtgacctccatgatgtatactcaccat 1405
||||| || ||||||||||| |||||||||| ||||| || |||||||| || ||||||
Sbjct: 4 gaatacaagtttgatgggttcagatttgatggtgtgacttcgatgatgtacacccaccat 63
Query: 1406 gg 1407
||
Sbjct: 64 gg 65
>gb|BI127636.1|BI127636 G063P64Y Populus cambium cDNA library Populus tremula x Populus
tremuloides cDNA, mRNA sequence
Length = 264
Score = 105 bits (53), Expect = 9e-021
Identities = 119/141 (84%)
Strand = Plus / Plus
Query: 2014 tgataaatgccgccgtagatttgaccttggagatgcagattatcttagatatcgtggtat 2073
|||||||||||| ||||||||||| || || |||||||||||||| ||||||| ||| |
Sbjct: 4 tgataaatgccggcgtagatttgatctgggggatgcagattatctaagatatcatggact 63
Query: 2074 gcaagagtttgaccaggcaatgcagcaccttgagggaaaatatgaattcatgacatctga 2133
|||||| ||||| |||||||||||||| |||| | || |||| ||||||||||||||
Sbjct: 64 gcaagaatttgatcaggcaatgcagcatattgaagaaatctatggtttcatgacatctga 123
Query: 2134 tcactcatatgtatcacggaa 2154
||| |||| ||||||||||
Sbjct: 124 gcaccaatatatatcacggaa 144
>gb|CK102082.1|CK102082 G063P64.5pR Populus tension wood cDNA library Populus tremula x
Populus tremuloides cDNA clone G063P64 5', mRNA sequence
Length = 394
Score = 89.7 bits (45), Expect = 5e-016
Identities = 118/141 (83%), Gaps = 1/141 (0%)
Strand = Plus / Plus
Query: 2014 tgataaatgccgccgtagatttgaccttggagatgcagattatcttagatatcgtggtat 2073
|||||||||||| |||| |||||| || || |||||||||||||| ||||||| ||| |
Sbjct: 4 tgataaatgccggcgta-atttgatctgggggatgcagattatctaagatatcatggact 62
Query: 2074 gcaagagtttgaccaggcaatgcagcaccttgagggaaaatatgaattcatgacatctga 2133
|||||| ||||| |||||||||||||| |||| | || |||| ||||||||||||||
Sbjct: 63 gcaagaatttgatcaggcaatgcagcatattgaagaaatctatggtttcatgacatctga 122
Query: 2134 tcactcatatgtatcacggaa 2154
||| |||| ||||||||||
Sbjct: 123 gcaccaatatatatcacggaa 143
Score = 46.1 bits (23), Expect = 0.007
Identities = 32/35 (91%)
Strand = Plus / Plus
Query: 2258 aagcctgggaagtacaagatcgttttagattctga 2292
||||| || ||||||||||| ||||||||||||||
Sbjct: 247 aagccaggaaagtacaagattgttttagattctga 281
Score = 40.1 bits (20), Expect = 0.44
Identities = 26/28 (92%)
Strand = Plus / Plus
Query: 2319 ggcttgatcatgacgctgagtacttcac 2346
|||||||||| || ||||||||||||||
Sbjct: 308 ggcttgatcaggaagctgagtacttcac 335
>gb|BI072151.1|BI072151 C070P27U Populus strain T89 leaves Populus tremula x Populus
tremuloides cDNA, mRNA sequence
Length = 242
Score = 83.8 bits (42), Expect = 3e-014
Identities = 185/232 (79%), Gaps = 1/232 (0%)
Strand = Plus / Plus
Query: 1550 ggaatgcctacattttgtatccctgtccaagatggtggtgttggttttgattatcgtctt 1609
|||||||| ||||| || || |||||||||||||| || || || || |||||||| ||
Sbjct: 5 ggaatgccaacattctgcattcctgtccaagatggaggcgtgggattngattatcgcctn 64
Query: 1610 catatggctgtcccagacaaatggattgaacttctgaagcaaagtgacgaatattgggaa 1669
|| ||||| | | || ||||||||||| ||||| || | | || ||| | ||| |
Sbjct: 65 cacatggccattgctgataaatggattgagcttctccagaagaaggatgaagactggaga 124
Query: 1670 atgggtgacatcgtgcacaccttaacaaatagaaggtggcttgaaaagtgtgtcacttat 1729
||||||||||| || ||||| | || || ||||||||||| |||||||| || | |||
Sbjct: 125 atgggtgacattgtacacactctcactaacagaaggtggctggaaaagtgcgtttcatat 184
Query: 1730 tgtgaaagtcatgatcaagctcttgttggtgacaagacaattgcattctggt 1781
|||||||||||| |||||||||||||| |||||||| |||||||||||||
Sbjct: 185 gctgaaagtcatgaccaagctcttgttggggacaagac-attgcattctggt 235
>gb|AJ772709.1|AJ772709 AJ772709 Populus euphratica shoot in vitro plantlet Israel Populus
euphratica cDNA clone P0001700011F11F1, mRNA sequence
Length = 576
Score = 73.8 bits (37), Expect = 3e-011
Identities = 55/61 (90%)
Strand = Plus / Minus
Query: 1330 gagatggtggcttgaagaatataaatttgatgggtttcgatttgatggggtgacctccat 1389
||||||||||||||| || | ||||||||||||||||||||||||||||| || |||||
Sbjct: 65 gagatggtggcttgaggagttcaaatttgatgggtttcgatttgatggggtaacttccat 6
Query: 1390 g 1390
|
Sbjct: 5 g 5
>gb|DT488378.1|DT488378 WS02536.B21_E08 PT-MB-N-A-15 Populus trichocarpa cDNA clone
WS02536_E08 3', mRNA sequence
Length = 912
Score = 69.9 bits (35), Expect = 5e-010
Identities = 68/79 (86%)
Strand = Plus / Minus
Query: 1330 gagatggtggcttgaagaatataaatttgatgggtttcgatttgatggggtgacctccat 1389
||||||||||||||| || | |||||||||||||||||||||||||| || || |||||
Sbjct: 689 gagatggtggcttgaggagttcaaatttgatgggtttcgatttgatggagtaacttccat 630
Query: 1390 gatgtatactcaccatgga 1408
| |||| ||||||||||
Sbjct: 629 gttgtaccatcaccatgga 611
>gb|BU820207.1|BU820207 UA52DPD12 Populus tremula cambium cDNA library Populus tremula cDNA 5
prime, mRNA sequence
Length = 645
Score = 65.9 bits (33), Expect = 8e-009
Identities = 54/61 (88%)
Strand = Plus / Plus
Query: 1330 gagatggtggcttgaagaatataaatttgatgggtttcgatttgatggggtgacctccat 1389
||||||||||||||| || | |||||||||||||||||||||||||| || || |||||
Sbjct: 386 gagatggtggcttgaggagttcaaatttgatgggtttcgatttgatggagtaacttccat 445
Query: 1390 g 1390
|
Sbjct: 446 g 446
>gb|CV130489.1|CV130489 X9P04a01 Populus stem seasonal library Populus deltoides cDNA, mRNA
sequence
Length = 791
Score = 63.9 bits (32), Expect = 3e-008
Identities = 44/48 (91%)
Strand = Plus / Plus
Query: 1330 gagatggtggcttgaagaatataaatttgatgggtttcgatttgatgg 1377
||||||||||||||| || | ||||||||||||||||||||||||||
Sbjct: 139 gagatggtggcttgaggagttcaaatttgatgggtttcgatttgatgg 186
Score = 52.0 bits (26), Expect = 1e-004
Identities = 35/38 (92%)
Strand = Plus / Plus
Query: 1910 aatttcatgggaaatgagtttgggcatcctgaatggat 1947
||||| ||||||||||| |||||||||||||| |||||
Sbjct: 722 aattttatgggaaatgaatttgggcatcctgagtggat 759
>gb|BI135829.1|BI135829 F059P04Y Populus flower cDNA library Populus trichocarpa cDNA, mRNA
sequence
Length = 238
Score = 52.0 bits (26), Expect = 1e-004
Identities = 35/38 (92%)
Strand = Plus / Plus
Query: 1910 aatttcatgggaaatgagtttgggcatcctgaatggat 1947
||||| ||||||||||| |||||||||||||| |||||
Sbjct: 32 aattttatgggaaatgaatttgggcatcctgagtggat 69
>gb|BI136479.1|BI136479 F069P04Y Populus flower cDNA library Populus trichocarpa cDNA, mRNA
sequence
Length = 321
Score = 52.0 bits (26), Expect = 1e-004
Identities = 35/38 (92%)
Strand = Plus / Plus
Query: 1910 aatttcatgggaaatgagtttgggcatcctgaatggat 1947
||||| ||||||||||| |||||||||||||| |||||
Sbjct: 265 aattttatgggaaatgaatttgggcatcctgagtggat 302
>gb|BI136596.1|BI136596 F070P49Y Populus flower cDNA library Populus trichocarpa cDNA, mRNA
sequence
Length = 498
Score = 52.0 bits (26), Expect = 1e-004
Identities = 35/38 (92%)
Strand = Plus / Plus
Query: 1910 aatttcatgggaaatgagtttgggcatcctgaatggat 1947
||||| ||||||||||| |||||||||||||| |||||
Sbjct: 265 aattttatgggaaatgaatttgggcatcctgagtggat 302
>gb|BI136597.1|BI136597 F070P51Y Populus flower cDNA library Populus trichocarpa cDNA, mRNA
sequence
Length = 388
Score = 52.0 bits (26), Expect = 1e-004
Identities = 35/38 (92%)
Strand = Plus / Plus
Query: 1910 aatttcatgggaaatgagtttgggcatcctgaatggat 1947
||||| ||||||||||| |||||||||||||| |||||
Sbjct: 265 aattttatgggaaatgaatttgggcatcctgagtggat 302
>gb|BI137707.1|BI137707 F092P17Y Populus flower cDNA library Populus trichocarpa cDNA, mRNA
sequence
Length = 429
Score = 52.0 bits (26), Expect = 1e-004
Identities = 35/38 (92%)
Strand = Plus / Plus
Query: 1910 aatttcatgggaaatgagtttgggcatcctgaatggat 1947
||||| ||||||||||| |||||||||||||| |||||
Sbjct: 265 aattttatgggaaatgaatttgggcatcctgagtggat 302
>gb|BU869509.1|BU869509 M130H07 Populus flower cDNA library Populus trichocarpa cDNA 5 prime,
mRNA sequence
Length = 721
Score = 52.0 bits (26), Expect = 1e-004
Identities = 35/38 (92%)
Strand = Plus / Plus
Query: 1910 aatttcatgggaaatgagtttgggcatcctgaatggat 1947
||||| ||||||||||| |||||||||||||| |||||
Sbjct: 126 aattttatgggaaatgaatttgggcatcctgagtggat 163
>gb|CK318876.1|CK318876 X9P04d02 Populus stem seasonal library Populus deltoides cDNA, mRNA
sequence
Length = 759
Score = 52.0 bits (26), Expect = 1e-004
Identities = 35/38 (92%)
Strand = Plus / Plus
Query: 1910 aatttcatgggaaatgagtttgggcatcctgaatggat 1947
||||| ||||||||||| |||||||||||||| |||||
Sbjct: 556 aattttatgggaaatgaatttgggcatcctgagtggat 593
>gb|AJ769923.1|AJ769923 AJ769923 Populus euphratica leaf 3-6 months, adult Populus euphratica
cDNA clone P0001100004F03F1, mRNA sequence
Length = 604
Score = 52.0 bits (26), Expect = 1e-004
Identities = 35/38 (92%)
Strand = Plus / Minus
Query: 1910 aatttcatgggaaatgagtttgggcatcctgaatggat 1947
||||| ||||||||||| |||||||||||||| |||||
Sbjct: 210 aattttatgggaaatgaatttgggcatcctgagtggat 173
>gb|DT472445.1|DT472445 WS01226.BR.1_L10 PT-GT-FL-A-3 Populus trichocarpa cDNA clone
WS01226_L10 5', mRNA sequence
Length = 859
Score = 52.0 bits (26), Expect = 1e-004
Identities = 35/38 (92%)
Strand = Plus / Plus
Query: 1910 aatttcatgggaaatgagtttgggcatcctgaatggat 1947
||||| ||||||||||| |||||||||||||| |||||
Sbjct: 174 aattttatgggaaatgaatttgggcatcctgagtggat 211
>gb|BU881700.1|BU881700 UM66TD01 Populus flower cDNA library Populus trichocarpa cDNA 5
prime, mRNA sequence
Length = 534
Score = 46.1 bits (23), Expect = 0.007
Identities = 34/38 (89%)
Strand = Plus / Plus
Query: 1910 aatttcatgggaaatgagtttgggcatcctgaatggat 1947
||||| ||||||||||| | |||||||||||| |||||
Sbjct: 467 aattttatgggaaatgaatntgggcatcctgagtggat 504
>gb|BU881789.1|BU881789 UM67TE08 Populus flower cDNA library Populus trichocarpa cDNA 5
prime, mRNA sequence
Length = 625
Score = 46.1 bits (23), Expect = 0.007
Identities = 34/38 (89%)
Strand = Plus / Plus
Query: 1910 aatttcatgggaaatgagtttgggcatcctgaatggat 1947
||||| ||||||||||| | |||||||||||| |||||
Sbjct: 473 aattttatgggaaatgaatntgggcatcctgagtggat 510
>gb|CF227503.1|CF227503 PtaD6G3G0313 Poplar cDNA library from wood tissues Populus alba x
Populus tremula cDNA 5', mRNA sequence
Length = 559
Score = 46.1 bits (23), Expect = 0.007
Identities = 32/35 (91%)
Strand = Plus / Plus
Query: 2258 aagcctgggaagtacaagatcgttttagattctga 2292
||||| || ||||||||||| ||||||||||||||
Sbjct: 207 aagccaggaaagtacaagattgttttagattctga 241
Score = 44.1 bits (22), Expect = 0.028
Identities = 55/66 (83%)
Strand = Plus / Plus
Query: 2089 ggcaatgcagcaccttgagggaaaatatgaattcatgacatctgatcactcatatgtatc 2148
|||||||||||| ||||| | || |||| |||||||||||||| ||| |||| ||||
Sbjct: 38 ggcaatgcagcatcttgaagaaatctatggtttcatgacatctgagcaccaatatatatc 97
Query: 2149 acggaa 2154
||||||
Sbjct: 98 acggaa 103
Score = 40.1 bits (20), Expect = 0.44
Identities = 26/28 (92%)
Strand = Plus / Plus
Query: 2319 ggcttgatcatgacgctgagtacttcac 2346
|||||||||| || ||||||||||||||
Sbjct: 268 ggcttgatcaggatgctgagtacttcac 295
>gb|CN518255.1|CN518255 GQ0094.B3_I15 GQ009 Populus trichocarpa x Populus deltoides cDNA
clone GQ0094_I15 5', mRNA sequence
Length = 453
Score = 46.1 bits (23), Expect = 0.007
Identities = 32/35 (91%)
Strand = Plus / Plus
Query: 2258 aagcctgggaagtacaagatcgttttagattctga 2292
||||| || ||||||||||| ||||||||||||||
Sbjct: 87 aagccaggaaagtacaagattgttttagattctga 121
>gb|CN520234.1|CN520234 GQ0105.B3_A02 GQ010 Populus trichocarpa x Populus deltoides cDNA
clone GQ0105_A02 5', mRNA sequence
Length = 762
Score = 46.1 bits (23), Expect = 0.007
Identities = 32/35 (91%)
Strand = Plus / Plus
Query: 2258 aagcctgggaagtacaagatcgttttagattctga 2292
||||| || ||||||||||| ||||||||||||||
Sbjct: 174 aagccaggaaagtacaagattgttttagattctga 208
>gb|CK089403.1|CK089403 C006P40.3pR Populus strain T89 leaves Populus tremula x Populus
tremuloides cDNA clone C006P40 3', mRNA sequence
Length = 576
Score = 40.1 bits (20), Expect = 0.44
Identities = 26/28 (92%)
Strand = Plus / Minus
Query: 2319 ggcttgatcatgacgctgagtacttcac 2346
|||||||||| || ||||||||||||||
Sbjct: 537 ggcttgatcaggaagctgagtacttcac 510
Database: Populus_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:49 PM
Number of letters in database: 203,408,664
Number of sequences in database: 369,679
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 327,422
Number of Sequences: 369679
Number of extensions: 327422
Number of successful extensions: 92413
Number of sequences better than 0.5: 29
Number of HSP's better than 0.5 without gapping: 29
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 92323
Number of HSP's gapped (non-prelim): 75
length of query: 2756
length of database: 203,408,664
effective HSP length: 20
effective length of query: 2736
effective length of database: 196,015,084
effective search space: 536297269824
effective search space used: 536297269824
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)