BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2591297.2.1
(786 letters)
Database: Populus_nucl_with_EST.fasta
369,679 sequences; 203,408,664 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CA926963.1|CA926963 MTU6CR.P3.C10 Aspen root cDNA Librar... 82 4e-014
gb|CA927139.1|CA927139 MTU6CR.P5.E01 Aspen root cDNA Librar... 82 4e-014
gb|CA927461.1|CA927461 MTU6CR.P9.C08 Aspen root cDNA Librar... 82 4e-014
gb|CF233578.1|CF233578 PtaJXO0025C3C0305 Poplar cDNA librar... 82 4e-014
gb|AF515607.1| Populus tremula x Populus tremuloides xylogl... 82 4e-014
gb|AI164113.1|AI164113 A054p36u Hybrid aspen plasmid librar... 80 1e-013
gb|CA926801.1|CA926801 MTU6CR.P1.C11 Aspen root cDNA Librar... 74 9e-012
gb|CA926960.1|CA926960 MTU6CR.P3.C07 Aspen root cDNA Librar... 74 9e-012
gb|CA927296.1|CA927296 MTU6CR.P7.C08 Aspen root cDNA Librar... 74 9e-012
gb|CA932907.1|CA932907 MTU5CS.P1.A07 Aspen stem cDNA Librar... 74 9e-012
gb|CF229791.1|CF229791 PtaXM0029G1G0113 Poplar cDNA library... 74 9e-012
gb|CK110199.1|CK110199 N054A12 Populus bark cDNA library Po... 74 9e-012
gb|CF232558.1|CF232558 PtaJXO0011H4H0416 Poplar cDNA librar... 70 1e-010
gb|BU826636.1|BU826636 UK122TH12 Populus apical shoot cDNA ... 68 5e-010
gb|BU862546.1|BU862546 S017A09 Populus imbibed seed cDNA li... 68 5e-010
gb|CA927406.1|CA927406 MTU6CR.P8.F04 Aspen root cDNA Librar... 68 5e-010
gb|CF236335.1|CF236335 PtaJXT11E9E0909 Poplar cDNA library ... 68 5e-010
gb|CA932992.1|CA932992 MTU5CS.P2.A12 Aspen stem cDNA Librar... 66 2e-009
gb|CA933301.1|CA933301 MTU5CS.P6.B09 Aspen stem cDNA Librar... 66 2e-009
gb|AJ772752.1|AJ772752 AJ772752 Populus euphratica shoot in... 60 1e-007
gb|AJ778011.1|AJ778011 AJ778011 Populus euphratica root 3-6... 60 1e-007
gb|CN549404.1|CN549404 GQ0242.B3_C13 GQ024 Populus trichoca... 58 5e-007
gb|CV246049.1|CV246049 WS0111.B21_B20 PT-P-FL-A-2 Populus t... 58 5e-007
gb|CV246369.1|CV246369 WS01110.B21_D06 PT-P-FL-A-2 Populus ... 58 5e-007
gb|CV247856.1|CV247856 WS01119.B21_J06 PT-P-FL-A-2 Populus ... 58 5e-007
gb|CV248886.1|CV248886 WS01122.B21_E17 PT-P-FL-A-2 Populus ... 58 5e-007
gb|CV250771.1|CV250771 WS0114.B21_L03 PT-P-FL-A-2 Populus t... 58 5e-007
gb|CV252510.1|CV252510 PX0015.B21_B06 PT-X-FL-A-1 Populus t... 58 5e-007
gb|DV465459.1|DV465459 MTUNUL1.P39.H08 NUL Populus fremonti... 58 5e-007
gb|BU832161.1|BU832161 T030B03 Populus apical shoot cDNA li... 56 2e-006
gb|BU892530.1|BU892530 P065A05 Populus petioles cDNA librar... 56 2e-006
gb|CN519614.1|CN519614 GQ0104.B3_J05 GQ010 Populus trichoca... 52 3e-005
gb|CN520892.1|CN520892 GQ0107.B3_B21 GQ010 Populus trichoca... 52 3e-005
gb|CN549971.1|CN549971 GQ0243.B3_C07 GQ024 Populus trichoca... 52 3e-005
gb|CV230048.1|CV230048 WS01915.B21_E06 PT-DX-N-A-10 Populus... 52 3e-005
gb|CV236170.1|CV236170 WS01223.B21_B16 PT-GT-FL-A-3 Populus... 52 3e-005
gb|CV237332.1|CV237332 WS01227.B21.1_I01 PT-GT-FL-A-3 Popul... 52 3e-005
gb|CV237380.1|CV237380 WS01227.B21.1_L19 PT-GT-FL-A-3 Popul... 52 3e-005
gb|CV239033.1|CV239033 WS0231.B21_B22 PT-MB-A-13 Populus tr... 52 3e-005
gb|CV240925.1|CV240925 WS02510.B21_L20 PT-MB-N-A-15 Populus... 52 3e-005
gb|CV244228.1|CV244228 WS0254.B21_B11 PT-MB-N-A-15 Populus ... 52 3e-005
gb|CV248079.1|CV248079 WS0112.B21_F17 PT-P-FL-A-2 Populus t... 52 3e-005
gb|CV253198.1|CV253198 WS0221.B21_C22 PTxD-ICC-A-12 Populus... 52 3e-005
gb|CV253328.1|CV253328 WS0221.B21_J11 PTxD-ICC-A-12 Populus... 52 3e-005
gb|CV253554.1|CV253554 WS0222.B21_E22 PTxD-ICC-A-12 Populus... 52 3e-005
gb|CV256088.1|CV256088 WS0242.B21_O11 PTxD-ICC-N-A-14 Popul... 52 3e-005
gb|CV264446.1|CV264446 WS02024.B21_I21 PTxN-IB-N-A-11 Popul... 52 3e-005
gb|CV270106.1|CV270106 WS0151.B21_B16 PTxN-IB-A-6 Populus t... 52 3e-005
gb|CV274385.1|CV274385 WS0173.B21_B15 PTxD-NR-A-8 Populus t... 52 3e-005
gb|CX170885.1|CX170885 C04_69-47_06.ab1 leaf inoculated wit... 52 3e-005
gb|DT472745.1|DT472745 WS01227.BR.1_L19 PT-GT-FL-A-3 Populu... 52 3e-005
gb|DT472846.1|DT472846 WS01227.BR_I01 PT-GT-FL-A-3 Populus ... 52 3e-005
gb|DT479295.1|DT479295 WS02525.BR_G07 PT-MB-N-A-15 Populus ... 52 3e-005
gb|DT480814.1|DT480814 WS02530.BR_A06 PT-MB-N-A-15 Populus ... 52 3e-005
gb|DT486093.1|DT486093 WS02530.B21_A06 PT-MB-N-A-15 Populus... 52 3e-005
gb|DT493960.1|DT493960 WS01117.BR_A01 PT-P-FL-A-2 Populus t... 52 3e-005
gb|DT518701.1|DT518701 WS02438.B21_P13 PTxD-ICC-N-A-14 Popu... 52 3e-005
gb|DV466514.1|DV466514 MTUNUL1.P6.F09 NUL Populus fremontii... 52 3e-005
gb|CA823928.1|CA823928 R33F02 two-month-old roots from clon... 48 5e-004
gb|CF119065.1|CF119065 MTU10CS.P13.A06 Aspen stem cDNA Libr... 48 5e-004
gb|CV231824.1|CV231824 WS0195.B21_K20 PT-DX-N-A-10 Populus ... 48 5e-004
gb|CV258701.1|CV258701 WS0201.B21_E13 PTxN-IB-N-A-11 Populu... 48 5e-004
gb|BU883705.1|BU883705 UM98TD01 Populus flower cDNA library... 46 0.002
gb|CK318110.1|CK318110 B9P05e07 Populus stem seasonal libra... 46 0.002
gb|CV227634.1|CV227634 WS0167.B21_M04 PT-DX-A-7 Populus tri... 46 0.002
gb|CV228532.1|CV228532 WS01910.B21_H02 PT-DX-N-A-10 Populus... 46 0.002
gb|CV261577.1|CV261577 WS02017.B21_C19 PTxN-IB-N-A-11 Popul... 46 0.002
gb|CV266419.1|CV266419 WS02029.B21_P14 PTxN-IB-N-A-11 Popul... 46 0.002
gb|CV270305.1|CV270305 WS0151.B21_K05 PTxN-IB-A-6 Populus t... 46 0.002
gb|CV271419.1|CV271419 WS0154.B21_K12 PTxN-IB-A-6 Populus t... 46 0.002
gb|DT496060.1|DT496060 WS01122.BR_E17 PT-P-FL-A-2 Populus t... 46 0.002
gb|AI167099.1|AI167099 xylem.est.866 Poplar xylem Lambda ZA... 44 0.008
gb|DT494834.1|DT494834 WS01119.BR_J06 PT-P-FL-A-2 Populus t... 44 0.008
gb|CK089019.1|CK089019 A084P58.3pR Hybrid aspen plasmid lib... 42 0.031
gb|BU866834.1|BU866834 S071C09 Populus imbibed seed cDNA li... 40 0.12
gb|BU880095.1|BU880095 UM41TD06 Populus flower cDNA library... 40 0.12
gb|BU880978.1|BU880978 UM57TC02 Populus flower cDNA library... 40 0.12
gb|BU883496.1|BU883496 UM91TE05 Populus flower cDNA library... 40 0.12
gb|CF119919.1|CF119919 MTU10CS.P8.A04 Aspen stem cDNA Libra... 40 0.12
gb|CK099155.1|CK099155 A054P36.5pR Hybrid aspen plasmid lib... 40 0.12
gb|CN550376.1|CN550376 GQ0241.B3_P14 GQ024 Populus trichoca... 40 0.12
gb|CV230535.1|CV230535 WS01916.B21_N17 PT-DX-N-A-10 Populus... 40 0.12
gb|CV260418.1|CV260418 WS02014.B21_A10 PTxN-IB-N-A-11 Popul... 40 0.12
gb|BP933689.1|BP933689 BP933689 full-length enriched poplar... 40 0.12
gb|DT525825.1|DT525825 WS02046.C21_G07 PTxN-IB-N-A-11 Popul... 40 0.12
gb|BI129420.1|BI129420 G090P49Y Populus cambium cDNA librar... 38 0.49
gb|BU832449.1|BU832449 T033H12 Populus apical shoot cDNA li... 38 0.49
gb|BU837071.1|BU837071 T094C10 Populus apical shoot cDNA li... 38 0.49
gb|BU862716.1|BU862716 S019B12 Populus imbibed seed cDNA li... 38 0.49
gb|BU891073.1|BU891073 P045E10 Populus petioles cDNA librar... 38 0.49
gb|CA925208.1|CA925208 MTU7TL.P15.A05 Aspen leaf cDNA Libra... 38 0.49
gb|CA925626.1|CA925626 MTU7TL.P3.H09 Aspen leaf cDNA Librar... 38 0.49
gb|CA931649.1|CA931649 MTU4TA.P21.B08 Aspen apex cDNA Libra... 38 0.49
gb|CA932033.1|CA932033 MTU4TA.P26.A09 Aspen apex cDNA Libra... 38 0.49
gb|CA933988.1|CA933988 MTU3TS.P1.D02 Aspen stem cDNA Librar... 38 0.49
gb|CK094840.1|CK094840 I057P08.3pR Populus senescing leaves... 38 0.49
gb|CK097793.1|CK097793 UB62BPA06.3pR Populus active cambium... 38 0.49
gb|CK107574.1|CK107574 UB62BPA06.5pR Populus active cambium... 38 0.49
gb|CK117026.1|CK117026 B024P18 Hybrid aspen plasmid library... 38 0.49
gb|CK318321.1|CK318321 B9P08a04 Populus stem seasonal libra... 38 0.49
gb|CV226451.1|CV226451 WS0164.B21_E21 PT-DX-A-7 Populus tri... 38 0.49
gb|CV235238.1|CV235238 WS01218.B21_F02 PT-GT-FL-A-3 Populus... 38 0.49
gb|CV262017.1|CV262017 WS02018.B21_G15 PTxN-IB-N-A-11 Popul... 38 0.49
gb|CV263496.1|CV263496 WS02022.B21_A07 PTxN-IB-N-A-11 Popul... 38 0.49
gb|CV263595.1|CV263595 WS02022.B21_E11 PTxN-IB-N-A-11 Popul... 38 0.49
gb|CV269726.1|CV269726 WS0209.B21_B08 PTxN-IB-N-A-11 Populu... 38 0.49
gb|CV270564.1|CV270564 WS0152.B21_F07 PTxN-IB-A-6 Populus t... 38 0.49
gb|DT494552.1|DT494552 WS01118.BR.1_M06 PT-P-FL-A-2 Populus... 38 0.49
gb|DT513684.1|DT513684 WS02422.B21_L11 PTxD-ICC-N-A-14 Popu... 38 0.49
gb|DV463831.1|DV463831 MTUNUL1.P2.H10 NUL Populus fremontii... 38 0.49
>gb|CA926963.1|CA926963 MTU6CR.P3.C10 Aspen root cDNA Library Populus tremuloides cDNA,
mRNA sequence
Length = 267
Score = 81.8 bits (41), Expect = 4e-014
Identities = 161/201 (80%)
Strand = Plus / Minus
Query: 486 gaactccggctggtcccaccagcgcgcgccctgggtggcgcagaagcgcgcctccgcgga 545
||||||| |||||||||||| | | |||||| ||||||||||| ||| ||| ||||
Sbjct: 247 gaactccttctggtcccaccatctggtgccctgtgtggcgcagaatttcgcttccacgga 188
Query: 546 ggcctcgcagccgtcgacgtggaagccgcggtaggaggcgacgaagggcgcgttggacca 605
|||||| ||||| || | |||||||| ||||||||| | |||||||| ||||||||
Sbjct: 187 ggcctcacagccatctatgtggaagctcttgtaggaggctataaagggcgccttggacca 128
Query: 606 gtccgtcttctcgcgcccgccgcgggtcgcccagtcgtcggcgttccacaggctggagta 665
||| |||||||| | || || | ||| ||||| || ||||||||||| ||||| |||||
Sbjct: 127 gtctgtcttctcaagtccacctctggtagcccaatcatcggcgttccataggcttgagta 68
Query: 666 gagcttcatcggctggctgaa 686
| |||||| |||||| ||||
Sbjct: 67 tatcttcattggctggttgaa 47
>gb|CA927139.1|CA927139 MTU6CR.P5.E01 Aspen root cDNA Library Populus tremuloides cDNA,
mRNA sequence
Length = 267
Score = 81.8 bits (41), Expect = 4e-014
Identities = 161/201 (80%)
Strand = Plus / Plus
Query: 486 gaactccggctggtcccaccagcgcgcgccctgggtggcgcagaagcgcgcctccgcgga 545
||||||| |||||||||||| | | |||||| ||||||||||| ||| ||| ||||
Sbjct: 21 gaactccttctggtcccaccatctggtgccctgtgtggcgcagaatttcgcttccacgga 80
Query: 546 ggcctcgcagccgtcgacgtggaagccgcggtaggaggcgacgaagggcgcgttggacca 605
|||||| ||||| || | |||||||| ||||||||| | |||||||| ||||||||
Sbjct: 81 ggcctcacagccatctatgtggaagctcgtgtaggaggctataaagggcgccttggacca 140
Query: 606 gtccgtcttctcgcgcccgccgcgggtcgcccagtcgtcggcgttccacaggctggagta 665
||| |||||||| | || || | ||| ||||| || ||||||||||| ||||| |||||
Sbjct: 141 gtctgtcttctcaagtccacctctggtagcccaatcatcggcgttccataggcttgagta 200
Query: 666 gagcttcatcggctggctgaa 686
| |||||| |||||| ||||
Sbjct: 201 tatcttcattggctggttgaa 221
>gb|CA927461.1|CA927461 MTU6CR.P9.C08 Aspen root cDNA Library Populus tremuloides cDNA,
mRNA sequence
Length = 270
Score = 81.8 bits (41), Expect = 4e-014
Identities = 161/201 (80%)
Strand = Plus / Minus
Query: 486 gaactccggctggtcccaccagcgcgcgccctgggtggcgcagaagcgcgcctccgcgga 545
||||||| |||||||||||| | | |||||| ||||||||||| ||| ||| ||||
Sbjct: 247 gaactccttctggtcccaccatctggtgccctgtgtggcgcagaatttcgcttccacgga 188
Query: 546 ggcctcgcagccgtcgacgtggaagccgcggtaggaggcgacgaagggcgcgttggacca 605
|||||| ||||| || | |||||||| ||||||||| | |||||||| ||||||||
Sbjct: 187 ggcctcacagccatctatgtggaagctcttgtaggaggctataaagggcgccttggacca 128
Query: 606 gtccgtcttctcgcgcccgccgcgggtcgcccagtcgtcggcgttccacaggctggagta 665
||| |||||||| | || || | ||| ||||| || ||||||||||| ||||| |||||
Sbjct: 127 gtctgtcttctcaagtccacctctggtagcccaatcatcggcgttccataggcttgagta 68
Query: 666 gagcttcatcggctggctgaa 686
| |||||| |||||| ||||
Sbjct: 67 tatcttcattggctggttgaa 47
>gb|CF233578.1|CF233578 PtaJXO0025C3C0305 Poplar cDNA library from young opposite xylem
Populus alba x Populus tremula cDNA 5', mRNA sequence
Length = 701
Score = 81.8 bits (41), Expect = 4e-014
Identities = 161/201 (80%)
Strand = Plus / Minus
Query: 486 gaactccggctggtcccaccagcgcgcgccctgggtggcgcagaagcgcgcctccgcgga 545
||||||| |||||||||||| | || ||||| ||||||||||| || ||| ||||
Sbjct: 369 gaactccttctggtcccaccatctagcaccctgtgtggcgcagaacttggcttccacgga 310
Query: 546 ggcctcgcagccgtcgacgtggaagccgcggtaggaggcgacgaagggcgcgttggacca 605
||||||||| || || | |||||||| | ||||||||| | |||||| || ||||||||
Sbjct: 309 ggcctcgcacccatctatgtggaagctcctgtaggaggcaatgaagggtgccttggacca 250
Query: 606 gtccgtcttctcgcgcccgccgcgggtcgcccagtcgtcggcgttccacaggctggagta 665
||| ||||||||| | || || | ||| ||||| || ||||| ||||| ||||| |||||
Sbjct: 249 gtctgtcttctcgagtccacccctggtagcccaatcatcggcattccataggcttgagta 190
Query: 666 gagcttcatcggctggctgaa 686
| |||||| |||||| ||||
Sbjct: 189 tatcttcattggctggttgaa 169
Score = 40.1 bits (20), Expect = 0.12
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 412 gtgcagtagttgtagatggt 431
||||||||||||||||||||
Sbjct: 443 gtgcagtagttgtagatggt 424
Score = 38.2 bits (19), Expect = 0.49
Identities = 56/67 (83%), Gaps = 1/67 (1%)
Strand = Plus / Minus
Query: 717 gttcttgaacacccggatcggcacgtcgtccacgaagaacgcgatcatgttagaggttcc 776
|||||||||||| | ||| ||||| || ||||||| |||| | |||||| || | |||||
Sbjct: 141 gttcttgaacactctgattggcacatcatccacgaggaacactatcatg-tacatgttcc 83
Query: 777 agaggac 783
|||||||
Sbjct: 82 agaggac 76
>gb|AF515607.1| Populus tremula x Populus tremuloides xyloglucan
endotransglycosylase precursor (XET16A) mRNA, complete
cds
Length = 1267
Score = 81.8 bits (41), Expect = 4e-014
Identities = 161/201 (80%)
Strand = Plus / Minus
Query: 486 gaactccggctggtcccaccagcgcgcgccctgggtggcgcagaagcgcgcctccgcgga 545
||||||| |||||||||||| | || ||||| ||||||||||| || ||| ||||
Sbjct: 815 gaactccttctggtcccaccatctagcaccctgtgtggcgcagaacttggcttccacgga 756
Query: 546 ggcctcgcagccgtcgacgtggaagccgcggtaggaggcgacgaagggcgcgttggacca 605
||||||||| || || | |||||||| | ||||||||| | ||| || || ||||||||
Sbjct: 755 ggcctcgcacccatctatgtggaagctcctgtaggaggcaatgaacggtgccttggacca 696
Query: 606 gtccgtcttctcgcgcccgccgcgggtcgcccagtcgtcggcgttccacaggctggagta 665
||| ||||||||| | || || | ||| ||||| || ||||| ||||| ||||| |||||
Sbjct: 695 gtctgtcttctcgagtccacccctggtagcccaatcatcggcattccataggcttgagta 636
Query: 666 gagcttcatcggctggctgaa 686
|| |||||| |||||| ||||
Sbjct: 635 gatcttcattggctggttgaa 615
Score = 46.1 bits (23), Expect = 0.002
Identities = 57/67 (85%), Gaps = 1/67 (1%)
Strand = Plus / Minus
Query: 717 gttcttgaacacccggatcggcacgtcgtccacgaagaacgcgatcatgttagaggttcc 776
|||||||||||| | ||| |||||||| ||||||| |||| | |||||| || | |||||
Sbjct: 587 gttcttgaacactctgattggcacgtcatccacgaggaacactatcatg-tacatgttcc 529
Query: 777 agaggac 783
|||||||
Sbjct: 528 agaggac 522
>gb|AI164113.1|AI164113 A054p36u Hybrid aspen plasmid library Populus tremula x Populus
tremuloides cDNA 5', mRNA sequence
Length = 288
Score = 79.8 bits (40), Expect = 1e-013
Identities = 154/192 (80%)
Strand = Plus / Minus
Query: 495 ctggtcccaccagcgcgcgccctgggtggcgcagaagcgcgcctccgcggaggcctcgca 554
|||||||||||| | || ||||| ||||||||||| || ||| |||||||||||||
Sbjct: 268 ctggtcccaccatctagcaccctgtgtggcgcagaacttggcttccacggaggcctcgca 209
Query: 555 gccgtcgacgtggaagccgcggtaggaggcgacgaagggcgcgttggaccagtccgtctt 614
|| || | |||||||| | ||||||||| | ||| || || ||||||||||| |||||
Sbjct: 208 cccatctatgtggaagctcctgtaggaggcaatgaacggtgccttggaccagtctgtctt 149
Query: 615 ctcgcgcccgccgcgggtcgcccagtcgtcggcgttccacaggctggagtagagcttcat 674
|||| | || || | ||| ||||| || ||||| ||||| ||||| ||||||| ||||||
Sbjct: 148 ctcgagtccacccctggtagcccaatcatcggcattccataggcttgagtagatcttcat 89
Query: 675 cggctggctgaa 686
|||||| ||||
Sbjct: 88 tggctggttgaa 77
>gb|CA926801.1|CA926801 MTU6CR.P1.C11 Aspen root cDNA Library Populus tremuloides cDNA,
mRNA sequence
Length = 267
Score = 73.8 bits (37), Expect = 9e-012
Identities = 160/201 (79%)
Strand = Plus / Plus
Query: 486 gaactccggctggtcccaccagcgcgcgccctgggtggcgcagaagcgcgcctccgcgga 545
||||||| |||||||||||| | | |||| | ||||||||||| ||| ||| ||||
Sbjct: 21 gaactccttctggtcccaccatctggtgccccgtgtggcgcagaatttcgcttccacgga 80
Query: 546 ggcctcgcagccgtcgacgtggaagccgcggtaggaggcgacgaagggcgcgttggacca 605
|||||| ||||| || | |||||||| ||||||||| | |||||||| ||||||||
Sbjct: 81 ggcctcacagccatctatgtggaagctcttgtaggaggctataaagggcgccttggacca 140
Query: 606 gtccgtcttctcgcgcccgccgcgggtcgcccagtcgtcggcgttccacaggctggagta 665
||| |||||||| | || || | ||| ||||| || ||||||||||| ||||| |||||
Sbjct: 141 gtctgtcttctcaagtccacctctggtagcccaatcatcggcgttccataggcttgagta 200
Query: 666 gagcttcatcggctggctgaa 686
| |||||| |||||| ||||
Sbjct: 201 tatcttcattggctggttgaa 221
>gb|CA926960.1|CA926960 MTU6CR.P3.C07 Aspen root cDNA Library Populus tremuloides cDNA,
mRNA sequence
Length = 296
Score = 73.8 bits (37), Expect = 9e-012
Identities = 160/201 (79%)
Strand = Plus / Minus
Query: 486 gaactccggctggtcccaccagcgcgcgccctgggtggcgcagaagcgcgcctccgcgga 545
||||||| |||||||||||| | | |||||| ||||| ||||| ||| ||| ||||
Sbjct: 276 gaactccttctggtcccaccatctggtgccctgtgtggcacagaatttcgcttccacgga 217
Query: 546 ggcctcgcagccgtcgacgtggaagccgcggtaggaggcgacgaagggcgcgttggacca 605
||| || ||||| || | |||||||| ||||||||| | |||||||| ||||||||
Sbjct: 216 ggcttcacagccatcaatgtggaagctcttgtaggaggctataaagggcgccttggacca 157
Query: 606 gtccgtcttctcgcgcccgccgcgggtcgcccagtcgtcggcgttccacaggctggagta 665
||| |||||||| | || || | ||| ||||| |||||||||||||| ||||| |||||
Sbjct: 156 gtctgtcttctcaagtccacctctggtagcccaatcgtcggcgttccataggcttgagta 97
Query: 666 gagcttcatcggctggctgaa 686
| |||||| |||||| ||||
Sbjct: 96 tatcttcattggctggttgaa 76
Score = 48.1 bits (24), Expect = 5e-004
Identities = 36/40 (90%)
Strand = Plus / Minus
Query: 717 gttcttgaacacccggatcggcacgtcgtccacgaagaac 756
|||||||||||| | ||| |||||||| ||||||||||||
Sbjct: 48 gttcttgaacactctgattggcacgtcatccacgaagaac 9
>gb|CA927296.1|CA927296 MTU6CR.P7.C08 Aspen root cDNA Library Populus tremuloides cDNA,
mRNA sequence
Length = 296
Score = 73.8 bits (37), Expect = 9e-012
Identities = 160/201 (79%)
Strand = Plus / Minus
Query: 486 gaactccggctggtcccaccagcgcgcgccctgggtggcgcagaagcgcgcctccgcgga 545
||||||| |||||||||||| | | |||||| ||||| ||||| ||| ||| ||||
Sbjct: 276 gaactccttctggtcccaccatctggtgccctgtgtggcacagaatttcgcttccacgga 217
Query: 546 ggcctcgcagccgtcgacgtggaagccgcggtaggaggcgacgaagggcgcgttggacca 605
||| || ||||| || | |||||||| ||||||||| | |||||||| ||||||||
Sbjct: 216 ggcttcacagccatcaatgtggaagctcttgtaggaggctataaagggcgccttggacca 157
Query: 606 gtccgtcttctcgcgcccgccgcgggtcgcccagtcgtcggcgttccacaggctggagta 665
||| |||||||| | || || | ||| ||||| |||||||||||||| ||||| |||||
Sbjct: 156 gtctgtcttctcaagtccacctctggtagcccaatcgtcggcgttccataggcttgagta 97
Query: 666 gagcttcatcggctggctgaa 686
| |||||| |||||| ||||
Sbjct: 96 tatcttcattggctggttgaa 76
Score = 48.1 bits (24), Expect = 5e-004
Identities = 36/40 (90%)
Strand = Plus / Minus
Query: 717 gttcttgaacacccggatcggcacgtcgtccacgaagaac 756
|||||||||||| | ||| |||||||| ||||||||||||
Sbjct: 48 gttcttgaacactctgattggcacgtcatccacgaagaac 9
>gb|CA932907.1|CA932907 MTU5CS.P1.A07 Aspen stem cDNA Library Populus tremuloides cDNA,
mRNA sequence
Length = 296
Score = 73.8 bits (37), Expect = 9e-012
Identities = 160/201 (79%)
Strand = Plus / Minus
Query: 486 gaactccggctggtcccaccagcgcgcgccctgggtggcgcagaagcgcgcctccgcgga 545
||||||| |||||||||||| | | |||||| ||||| ||||| ||| ||| ||||
Sbjct: 276 gaactccttctggtcccaccatctggtgccctgtgtggcacagaatttcgcttccacgga 217
Query: 546 ggcctcgcagccgtcgacgtggaagccgcggtaggaggcgacgaagggcgcgttggacca 605
||| || ||||| || | |||||||| ||||||||| | |||||||| ||||||||
Sbjct: 216 ggcttcacagccatcaatgtggaagctcttgtaggaggctataaagggcgccttggacca 157
Query: 606 gtccgtcttctcgcgcccgccgcgggtcgcccagtcgtcggcgttccacaggctggagta 665
||| |||||||| | || || | ||| ||||| |||||||||||||| ||||| |||||
Sbjct: 156 gtctgtcttctcaagtccacctctggtagcccaatcgtcggcgttccataggcttgagta 97
Query: 666 gagcttcatcggctggctgaa 686
| |||||| |||||| ||||
Sbjct: 96 tatcttcattggctggttgaa 76
Score = 48.1 bits (24), Expect = 5e-004
Identities = 36/40 (90%)
Strand = Plus / Minus
Query: 717 gttcttgaacacccggatcggcacgtcgtccacgaagaac 756
|||||||||||| | ||| |||||||| ||||||||||||
Sbjct: 48 gttcttgaacactctgattggcacgtcatccacgaagaac 9
>gb|CF229791.1|CF229791 PtaXM0029G1G0113 Poplar cDNA library from mature xylem Populus alba
x Populus tremula cDNA 5', mRNA sequence
Length = 753
Score = 73.8 bits (37), Expect = 9e-012
Identities = 160/201 (79%)
Strand = Plus / Minus
Query: 486 gaactccggctggtcccaccagcgcgcgccctgggtggcgcagaagcgcgcctccgcgga 545
||||||| |||||||||||| | || ||||| ||||||||||| || ||| ||||
Sbjct: 441 gaactccttctggtcccaccatctagcaccctgtgtggcgcagaacttggcttccacgga 382
Query: 546 ggcctcgcagccgtcgacgtggaagccgcggtaggaggcgacgaagggcgcgttggacca 605
||||||||| || || | |||||| | | ||||||||| | ||| || || ||||||||
Sbjct: 381 ggcctcgcacccatctatgtggaaactcctgtaggaggcaatgaacggtgccttggacca 322
Query: 606 gtccgtcttctcgcgcccgccgcgggtcgcccagtcgtcggcgttccacaggctggagta 665
||| ||||||||| | || || | ||| |||||||| ||||| ||||| ||||| |||||
Sbjct: 321 gtctgtcttctcgagtccacccctggtagcccagtcatcggcattccataggcttgagta 262
Query: 666 gagcttcatcggctggctgaa 686
| |||||| |||||| ||||
Sbjct: 261 tatcttcattggctggttgaa 241
Score = 40.1 bits (20), Expect = 0.12
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 412 gtgcagtagttgtagatggt 431
||||||||||||||||||||
Sbjct: 515 gtgcagtagttgtagatggt 496
>gb|CK110199.1|CK110199 N054A12 Populus bark cDNA library Populus tremula x Populus
tremuloides cDNA clone N054A12 5', mRNA sequence
Length = 887
Score = 73.8 bits (37), Expect = 9e-012
Identities = 160/201 (79%)
Strand = Plus / Minus
Query: 486 gaactccggctggtcccaccagcgcgcgccctgggtggcgcagaagcgcgcctccgcgga 545
||||||| |||||||||||| | | |||||| ||||| ||||| ||| ||| ||||
Sbjct: 442 gaactccttctggtcccaccatctggtgccctgtgtggcacagaatttcgcttccacgga 383
Query: 546 ggcctcgcagccgtcgacgtggaagccgcggtaggaggcgacgaagggcgcgttggacca 605
||| || |||||||| | |||||||| ||||||||| | |||||||| ||||||||
Sbjct: 382 ggcttcacagccgtctatgtggaagctcttgtaggaggctataaagggcgccttggacca 323
Query: 606 gtccgtcttctcgcgcccgccgcgggtcgcccagtcgtcggcgttccacaggctggagta 665
||| |||||||| | || || | ||| ||||| || ||||||||||| ||||| |||||
Sbjct: 322 gtctgtcttctcaagtccacctctggtagcccaatcatcggcgttccataggcttgagta 263
Query: 666 gagcttcatcggctggctgaa 686
| |||||| |||||| ||||
Sbjct: 262 tatcttcattggctggttgaa 242
Score = 40.1 bits (20), Expect = 0.12
Identities = 35/40 (87%)
Strand = Plus / Minus
Query: 717 gttcttgaacacccggatcggcacgtcgtccacgaagaac 756
|||||||||||| | ||| || ||||| ||||||||||||
Sbjct: 214 gttcttgaacactctgattggtacgtcatccacgaagaac 175
Score = 38.2 bits (19), Expect = 0.49
Identities = 22/23 (95%)
Strand = Plus / Minus
Query: 412 gtgcagtagttgtagatggtgta 434
|||||||| ||||||||||||||
Sbjct: 516 gtgcagtaattgtagatggtgta 494
>gb|CF232558.1|CF232558 PtaJXO0011H4H0416 Poplar cDNA library from young opposite xylem
Populus alba x Populus tremula cDNA 5', mRNA sequence
Length = 636
Score = 69.9 bits (35), Expect = 1e-010
Identities = 46/50 (92%)
Strand = Plus / Minus
Query: 634 gcccagtcgtcggcgttccacaggctggagtagagcttcatcggctggct 683
|||||||||||||||||||| ||||||||||| | | |||||||||||||
Sbjct: 612 gcccagtcgtcggcgttccagaggctggagtaaatcntcatcggctggct 563
>gb|BU826636.1|BU826636 UK122TH12 Populus apical shoot cDNA library Populus tremula x
Populus tremuloides cDNA 5 prime, mRNA sequence
Length = 676
Score = 67.9 bits (34), Expect = 5e-010
Identities = 46/50 (92%)
Strand = Plus / Minus
Query: 634 gcccagtcgtcggcgttccacaggctggagtagagcttcatcggctggct 683
|||||||||||||||||||| ||||||||||| | | |||||||||||||
Sbjct: 674 gcccagtcgtcggcgttccagaggctggagtaaatcctcatcggctggct 625
>gb|BU862546.1|BU862546 S017A09 Populus imbibed seed cDNA library Populus tremula cDNA 5
prime, mRNA sequence
Length = 521
Score = 67.9 bits (34), Expect = 5e-010
Identities = 46/50 (92%)
Strand = Plus / Minus
Query: 634 gcccagtcgtcggcgttccacaggctggagtagagcttcatcggctggct 683
|||||||||||||||||||| ||||||||||| | | |||||||||||||
Sbjct: 57 gcccagtcgtcggcgttccagaggctggagtaaatcctcatcggctggct 8
>gb|CA927406.1|CA927406 MTU6CR.P8.F04 Aspen root cDNA Library Populus tremuloides cDNA,
mRNA sequence
Length = 616
Score = 67.9 bits (34), Expect = 5e-010
Identities = 46/50 (92%)
Strand = Plus / Plus
Query: 634 gcccagtcgtcggcgttccacaggctggagtagagcttcatcggctggct 683
|||||||||||||||||||| ||||||||||| | | |||||||||||||
Sbjct: 81 gcccagtcgtcggcgttccagaggctggagtaaatcctcatcggctggct 130
>gb|CF236335.1|CF236335 PtaJXT11E9E0909 Poplar cDNA library from young tension xylem
Populus alba x Populus tremula cDNA 5', mRNA sequence
Length = 755
Score = 67.9 bits (34), Expect = 5e-010
Identities = 46/50 (92%)
Strand = Plus / Minus
Query: 634 gcccagtcgtcggcgttccacaggctggagtagagcttcatcggctggct 683
|||||||||||||||||||| ||||||||||| | | |||||||||||||
Sbjct: 233 gcccagtcgtcggcgttccagaggctggagtaaatcctcatcggctggct 184
>gb|CA932992.1|CA932992 MTU5CS.P2.A12 Aspen stem cDNA Library Populus tremuloides cDNA,
mRNA sequence
Length = 296
Score = 65.9 bits (33), Expect = 2e-009
Identities = 159/201 (79%)
Strand = Plus / Minus
Query: 486 gaactccggctggtcccaccagcgcgcgccctgggtggcgcagaagcgcgcctccgcgga 545
||||||| |||||||||||| | || ||||| ||||||||||| || ||| ||||
Sbjct: 276 gaactccttctggtcccaccatctagcaccctgtgtggcgcagaacttggcttccacgga 217
Query: 546 ggcctcgcagccgtcgacgtggaagccgcggtaggaggcgacgaagggcgcgttggacca 605
||||||||| || || | |||||| | | ||||||||| | ||| || || ||||||||
Sbjct: 216 ggcctcgcacccatctatgtggaaactcctgtaggaggcaatgaacggtgccttggacca 157
Query: 606 gtccgtcttctcgcgcccgccgcgggtcgcccagtcgtcggcgttccacaggctggagta 665
||| ||||||||| | || || | ||| ||||| || ||||| ||||| ||||| |||||
Sbjct: 156 gtctgtcttctcgagtccacccctggtagcccaatcatcggcattccataggcttgagta 97
Query: 666 gagcttcatcggctggctgaa 686
| |||||| |||||| ||||
Sbjct: 96 tatcttcattggctggttgaa 76
Score = 40.1 bits (20), Expect = 0.12
Identities = 35/40 (87%)
Strand = Plus / Minus
Query: 717 gttcttgaacacccggatcggcacgtcgtccacgaagaac 756
|||||||||||| | ||| |||||||| ||||||| ||||
Sbjct: 48 gttcttgaacactctgattggcacgtcatccacgaggaac 9
>gb|CA933301.1|CA933301 MTU5CS.P6.B09 Aspen stem cDNA Library Populus tremuloides cDNA,
mRNA sequence
Length = 296
Score = 65.9 bits (33), Expect = 2e-009
Identities = 159/201 (79%)
Strand = Plus / Minus
Query: 486 gaactccggctggtcccaccagcgcgcgccctgggtggcgcagaagcgcgcctccgcgga 545
||||||| |||||||||||| | || ||||| ||||||||||| || ||| ||||
Sbjct: 276 gaactccttctggtcccaccatctagcaccctgtgtggcgcagaacttggcttccacgga 217
Query: 546 ggcctcgcagccgtcgacgtggaagccgcggtaggaggcgacgaagggcgcgttggacca 605
||||||||| || || | |||||| | | ||||||||| | ||| || || ||||||||
Sbjct: 216 ggcctcgcacccatctatgtggaaactcctgtaggaggcaatgaacggtgccttggacca 157
Query: 606 gtccgtcttctcgcgcccgccgcgggtcgcccagtcgtcggcgttccacaggctggagta 665
||| ||||||||| | || || | ||| ||||| || ||||| ||||| ||||| |||||
Sbjct: 156 gtctgtcttctcgagtccacccctggtagcccaatcatcggcattccataggcttgagta 97
Query: 666 gagcttcatcggctggctgaa 686
| |||||| |||||| ||||
Sbjct: 96 tatcttcattggctggttgaa 76
Score = 40.1 bits (20), Expect = 0.12
Identities = 35/40 (87%)
Strand = Plus / Minus
Query: 717 gttcttgaacacccggatcggcacgtcgtccacgaagaac 756
|||||||||||| | ||| |||||||| ||||||| ||||
Sbjct: 48 gttcttgaacactctgattggcacgtcatccacgaggaac 9
>gb|AJ772752.1|AJ772752 AJ772752 Populus euphratica shoot in vitro plantlet Israel Populus
euphratica cDNA clone P0001700013E01F1, mRNA sequence
Length = 251
Score = 60.0 bits (30), Expect = 1e-007
Identities = 81/98 (82%)
Strand = Plus / Minus
Query: 589 aagggcgcgttggaccagtccgtcttctcgcgcccgccgcgggtcgcccagtcgtcggcg 648
|||||||| ||||||||||| |||||||| | || || | ||| ||||| || ||||||
Sbjct: 175 aagggcgccttggaccagtctgtcttctcaagtccacctctggtagcccaatcatcggcg 116
Query: 649 ttccacaggctggagtagagcttcatcggctggctgaa 686
||||| ||||| ||||| | |||||| |||||| ||||
Sbjct: 115 ttccataggcttgagtatatcttcattggctggttgaa 78
>gb|AJ778011.1|AJ778011 AJ778011 Populus euphratica root 3-6 months Populus euphratica cDNA
clone P0000400038B10F1, mRNA sequence
Length = 695
Score = 60.0 bits (30), Expect = 1e-007
Identities = 81/98 (82%)
Strand = Plus / Minus
Query: 589 aagggcgcgttggaccagtccgtcttctcgcgcccgccgcgggtcgcccagtcgtcggcg 648
|||||||| ||||||||||| |||||||| | || || | ||| ||||| || ||||||
Sbjct: 676 aagggcgccttggaccagtctgtcttctcaagtccacctctggtagcccaatcatcggcg 617
Query: 649 ttccacaggctggagtagagcttcatcggctggctgaa 686
||||| ||||| ||||| | |||||| |||||| ||||
Sbjct: 616 ttccataggcttgagtatatcttcattggctggttgaa 579
Score = 40.1 bits (20), Expect = 0.12
Identities = 35/40 (87%)
Strand = Plus / Minus
Query: 717 gttcttgaacacccggatcggcacgtcgtccacgaagaac 756
|||||||||||| | ||| ||||| || ||||||||||||
Sbjct: 551 gttcttgaacactctgattggcacatcatccacgaagaac 512
>gb|CN549404.1|CN549404 GQ0242.B3_C13 GQ024 Populus trichocarpa x Populus deltoides cDNA
clone GQ0242_C13 5', mRNA sequence
Length = 646
Score = 58.0 bits (29), Expect = 5e-007
Identities = 158/201 (78%)
Strand = Plus / Minus
Query: 486 gaactccggctggtcccaccagcgcgcgccctgggtggcgcagaagcgcgcctccgcgga 545
||||||| |||||||||||| | || ||||| ||||| ||||| || ||| ||||
Sbjct: 510 gaactccttctggtcccaccatctagcaccctgtgtggcacagaacttggcttccacgga 451
Query: 546 ggcctcgcagccgtcgacgtggaagccgcggtaggaggcgacgaagggcgcgttggacca 605
||||||||| || || |||||||| | | ||||||||| | ||||| || ||||||||
Sbjct: 450 ggcctcgcacccatctacgtggaaactcctgtaggaggcaataaagggtgccttggacca 391
Query: 606 gtccgtcttctcgcgcccgccgcgggtcgcccagtcgtcggcgttccacaggctggagta 665
||| ||||||||| | || || | ||| ||||| || ||||| ||||| || || |||||
Sbjct: 390 gtctgtcttctcgagtccacccctggtagcccaatcatcggcattccatagacttgagta 331
Query: 666 gagcttcatcggctggctgaa 686
| |||||| |||||| ||||
Sbjct: 330 tatcttcattggctggttgaa 310
>gb|CV246049.1|CV246049 WS0111.B21_B20 PT-P-FL-A-2 Populus trichocarpa cDNA clone
WS0111_B20 3', mRNA sequence
Length = 707
Score = 58.0 bits (29), Expect = 5e-007
Identities = 158/201 (78%)
Strand = Plus / Plus
Query: 486 gaactccggctggtcccaccagcgcgcgccctgggtggcgcagaagcgcgcctccgcgga 545
||||||| |||||||||||| | || ||||| ||||| ||||| || ||| ||||
Sbjct: 497 gaactccttctggtcccaccatctagcaccctgtgtggcacagaacttggcttccacgga 556
Query: 546 ggcctcgcagccgtcgacgtggaagccgcggtaggaggcgacgaagggcgcgttggacca 605
||||||||| || || |||||||| | | ||||||||| | ||||| || ||||||||
Sbjct: 557 ggcctcgcacccatctacgtggaaactcctgtaggaggcaataaagggtgccttggacca 616
Query: 606 gtccgtcttctcgcgcccgccgcgggtcgcccagtcgtcggcgttccacaggctggagta 665
||| ||||||||| | || || | ||| ||||| || ||||| ||||| || || |||||
Sbjct: 617 gtctgtcttctcgagtccacccctggtagcccaatcatcggcattccatagacttgagta 676
Query: 666 gagcttcatcggctggctgaa 686
| |||||| |||||| ||||
Sbjct: 677 tatcttcattggctggttgaa 697
Score = 40.1 bits (20), Expect = 0.12
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 412 gtgcagtagttgtagatggt 431
||||||||||||||||||||
Sbjct: 423 gtgcagtagttgtagatggt 442
>gb|CV246369.1|CV246369 WS01110.B21_D06 PT-P-FL-A-2 Populus trichocarpa cDNA clone
WS01110_D06 3', mRNA sequence
Length = 759
Score = 58.0 bits (29), Expect = 5e-007
Identities = 158/201 (78%)
Strand = Plus / Plus
Query: 486 gaactccggctggtcccaccagcgcgcgccctgggtggcgcagaagcgcgcctccgcgga 545
||||||| |||||||||||| | || ||||| ||||| ||||| || ||| ||||
Sbjct: 502 gaactccttctggtcccaccatctagcaccctgtgtggcacagaacttggcttccacgga 561
Query: 546 ggcctcgcagccgtcgacgtggaagccgcggtaggaggcgacgaagggcgcgttggacca 605
||||||||| || || |||||||| | | ||||||||| | ||||| || ||||||||
Sbjct: 562 ggcctcgcacccatctacgtggaaactcctgtaggaggcaataaagggtgccttggacca 621
Query: 606 gtccgtcttctcgcgcccgccgcgggtcgcccagtcgtcggcgttccacaggctggagta 665
||| ||||||||| | || || | ||| ||||| || ||||| ||||| || || |||||
Sbjct: 622 gtctgtcttctcgagtccacccctggtagcccaatcatcggcattccatagacttgagta 681
Query: 666 gagcttcatcggctggctgaa 686
| |||||| |||||| ||||
Sbjct: 682 tatcttcattggctggttgaa 702
>gb|CV247856.1|CV247856 WS01119.B21_J06 PT-P-FL-A-2 Populus trichocarpa cDNA clone
WS01119_J06 3', mRNA sequence
Length = 688
Score = 58.0 bits (29), Expect = 5e-007
Identities = 116/145 (80%)
Strand = Plus / Plus
Query: 542 cggaggcctcgcagccgtcgacgtggaagccgcggtaggaggcgacgaagggcgcgttgg 601
||||||||||||| || || |||||||| | | ||||||||| | ||||| || ||||
Sbjct: 535 cggaggcctcgcacccatctacgtggaaactcctgtaggaggcaataaagggtgccttgg 594
Query: 602 accagtccgtcttctcgcgcccgccgcgggtcgcccagtcgtcggcgttccacaggctgg 661
||||||| ||||||||| | || || | ||| ||||| || ||||| ||||| || || |
Sbjct: 595 accagtctgtcttctcgagtccacccctggtagcccaatcatcggcattccatagacttg 654
Query: 662 agtagagcttcatcggctggctgaa 686
|||| | |||||| |||||| ||||
Sbjct: 655 agtatatcttcattggctggttgaa 679
Score = 40.1 bits (20), Expect = 0.12
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 412 gtgcagtagttgtagatggt 431
||||||||||||||||||||
Sbjct: 405 gtgcagtagttgtagatggt 424
>gb|CV248886.1|CV248886 WS01122.B21_E17 PT-P-FL-A-2 Populus trichocarpa cDNA clone
WS01122_E17 3', mRNA sequence
Length = 698
Score = 58.0 bits (29), Expect = 5e-007
Identities = 158/201 (78%)
Strand = Plus / Plus
Query: 486 gaactccggctggtcccaccagcgcgcgccctgggtggcgcagaagcgcgcctccgcgga 545
||||||| |||||||||||| | || ||||| ||||| ||||| || ||| ||||
Sbjct: 470 gaactccttctggtcccaccatctagcaccctgtgtggcacagaacttggcttccacgga 529
Query: 546 ggcctcgcagccgtcgacgtggaagccgcggtaggaggcgacgaagggcgcgttggacca 605
||||||||| || || |||||||| | | ||||||||| | ||||| || ||||||||
Sbjct: 530 ggcctcgcacccatctacgtggaaactcctgtaggaggcaataaagggtgccttggacca 589
Query: 606 gtccgtcttctcgcgcccgccgcgggtcgcccagtcgtcggcgttccacaggctggagta 665
||| ||||||||| | || || | ||| ||||| || ||||| ||||| || || |||||
Sbjct: 590 gtctgtcttctcgagtccacccctggtagcccaatcatcggcattccatagacttgagta 649
Query: 666 gagcttcatcggctggctgaa 686
| |||||| |||||| ||||
Sbjct: 650 tatcttcattggctggttgaa 670
Score = 40.1 bits (20), Expect = 0.12
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 412 gtgcagtagttgtagatggt 431
||||||||||||||||||||
Sbjct: 396 gtgcagtagttgtagatggt 415
>gb|CV250771.1|CV250771 WS0114.B21_L03 PT-P-FL-A-2 Populus trichocarpa cDNA clone
WS0114_L03 3', mRNA sequence
Length = 731
Score = 58.0 bits (29), Expect = 5e-007
Identities = 158/201 (78%)
Strand = Plus / Plus
Query: 486 gaactccggctggtcccaccagcgcgcgccctgggtggcgcagaagcgcgcctccgcgga 545
||||||| |||||||||||| | || ||||| ||||| ||||| || ||| ||||
Sbjct: 474 gaactccttctggtcccaccatctagcaccctgtgtggcacagaacttggcttccacgga 533
Query: 546 ggcctcgcagccgtcgacgtggaagccgcggtaggaggcgacgaagggcgcgttggacca 605
||||||||| || || |||||||| | | ||||||||| | ||||| || ||||||||
Sbjct: 534 ggcctcgcacccatctacgtggaaactcctgtaggaggcaataaagggtgccttggacca 593
Query: 606 gtccgtcttctcgcgcccgccgcgggtcgcccagtcgtcggcgttccacaggctggagta 665
||| ||||||||| | || || | ||| ||||| || ||||| ||||| || || |||||
Sbjct: 594 gtctgtcttctcgagtccacccctggtagcccaatcatcggcattccatagacttgagta 653
Query: 666 gagcttcatcggctggctgaa 686
| |||||| |||||| ||||
Sbjct: 654 tatcttcattggctggttgaa 674
Score = 40.1 bits (20), Expect = 0.12
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 412 gtgcagtagttgtagatggt 431
||||||||||||||||||||
Sbjct: 400 gtgcagtagttgtagatggt 419
>gb|CV252510.1|CV252510 PX0015.B21_B06 PT-X-FL-A-1 Populus trichocarpa cDNA clone
PX0015_B06 3', mRNA sequence
Length = 717
Score = 58.0 bits (29), Expect = 5e-007
Identities = 116/145 (80%)
Strand = Plus / Plus
Query: 542 cggaggcctcgcagccgtcgacgtggaagccgcggtaggaggcgacgaagggcgcgttgg 601
||||||||||||| || || |||||||| | | ||||||||| | ||||| || ||||
Sbjct: 528 cggaggcctcgcacccatctacgtggaaactcctgtaggaggcaataaagggtgccttgg 587
Query: 602 accagtccgtcttctcgcgcccgccgcgggtcgcccagtcgtcggcgttccacaggctgg 661
||||||| ||||||||| | || || | ||| ||||| || ||||| ||||| || || |
Sbjct: 588 accagtctgtcttctcgagtccacccctggtagcccaatcatcggcattccatagacttg 647
Query: 662 agtagagcttcatcggctggctgaa 686
|||| | |||||| |||||| ||||
Sbjct: 648 agtatatcttcattggctggttgaa 672
Score = 40.1 bits (20), Expect = 0.12
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 412 gtgcagtagttgtagatggt 431
||||||||||||||||||||
Sbjct: 398 gtgcagtagttgtagatggt 417
>gb|DV465459.1|DV465459 MTUNUL1.P39.H08 NUL Populus fremontii x Populus angustifolia cDNA,
mRNA sequence
Length = 882
Score = 58.0 bits (29), Expect = 5e-007
Identities = 158/201 (78%)
Strand = Plus / Minus
Query: 486 gaactccggctggtcccaccagcgcgcgccctgggtggcgcagaagcgcgcctccgcgga 545
||||||| |||||||||||| | || ||||| ||||| ||||| || ||| ||||
Sbjct: 805 gaactccttctggtcccaccatctagcaccctgtgtggcacagaacttggcttccacgga 746
Query: 546 ggcctcgcagccgtcgacgtggaagccgcggtaggaggcgacgaagggcgcgttggacca 605
||||||||| || || | |||||||| | ||||||||| | ||||| || ||||||||
Sbjct: 745 ggcctcgcacccatctatgtggaagctcctgtaggaggcaataaagggtgccttggacca 686
Query: 606 gtccgtcttctcgcgcccgccgcgggtcgcccagtcgtcggcgttccacaggctggagta 665
||| ||||||||| | || || | ||| ||||| || ||||| ||||| || || |||||
Sbjct: 685 gtctgtcttctcgagtccacccctggtagcccaatcatcggcattccatagacttgagta 626
Query: 666 gagcttcatcggctggctgaa 686
| |||||| |||||| ||||
Sbjct: 625 taacttcattggctggttgaa 605
Score = 40.1 bits (20), Expect = 0.12
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 412 gtgcagtagttgtagatggt 431
||||||||||||||||||||
Sbjct: 879 gtgcagtagttgtagatggt 860
Score = 38.2 bits (19), Expect = 0.49
Identities = 56/67 (83%), Gaps = 1/67 (1%)
Strand = Plus / Minus
Query: 717 gttcttgaacacccggatcggcacgtcgtccacgaagaacgcgatcatgttagaggttcc 776
|||||||||||| | ||| ||||| || ||||||| |||| | |||||| || | |||||
Sbjct: 577 gttcttgaacactctgattggcacatcatccacgaggaacactatcatg-tacatgttcc 519
Query: 777 agaggac 783
|||||||
Sbjct: 518 agaggac 512
>gb|BU832161.1|BU832161 T030B03 Populus apical shoot cDNA library Populus tremula x Populus
tremuloides cDNA 5 prime, mRNA sequence
Length = 655
Score = 56.0 bits (28), Expect = 2e-006
Identities = 40/44 (90%)
Strand = Plus / Minus
Query: 640 tcgtcggcgttccacaggctggagtagagcttcatcggctggct 683
|||||||||||||| ||||||||||| | | |||||||||||||
Sbjct: 655 tcgtcggcgttccagaggctggagtaaatcctcatcggctggct 612
>gb|BU892530.1|BU892530 P065A05 Populus petioles cDNA library Populus tremula cDNA 5 prime,
mRNA sequence
Length = 593
Score = 56.0 bits (28), Expect = 2e-006
Identities = 70/84 (83%)
Strand = Plus / Minus
Query: 598 ttggaccagtccgtcttctcgcgcccgccgcgggtcgcccagtcgtcggcgttccacagg 657
||||||||||| ||||||||| | || || | ||| ||||| || ||||| ||||| |||
Sbjct: 589 ttggaccagtctgtcttctcgagtccacccctggtagcccaatcatcggcattccatagg 530
Query: 658 ctggagtagagcttcatcggctgg 681
|| ||||||| |||||| ||||||
Sbjct: 529 cttgagtagatcttcattggctgg 506
Score = 46.1 bits (23), Expect = 0.002
Identities = 57/67 (85%), Gaps = 1/67 (1%)
Strand = Plus / Minus
Query: 717 gttcttgaacacccggatcggcacgtcgtccacgaagaacgcgatcatgttagaggttcc 776
|||||||||||| | ||| |||||||| ||||||| |||| | |||||| || | |||||
Sbjct: 473 gttcttgaacactctgattggcacgtcatccacgaggaacactatcatg-tacatgttcc 415
Query: 777 agaggac 783
|||||||
Sbjct: 414 agaggac 408
>gb|CN519614.1|CN519614 GQ0104.B3_J05 GQ010 Populus trichocarpa x Populus deltoides cDNA
clone GQ0104_J05 5', mRNA sequence
Length = 710
Score = 52.0 bits (26), Expect = 3e-005
Identities = 44/50 (88%)
Strand = Plus / Minus
Query: 634 gcccagtcgtcggcgttccacaggctggagtagagcttcatcggctggct 683
|||||||| ||||||||||| ||||||||||| | | |||| ||||||||
Sbjct: 197 gcccagtcatcggcgttccagaggctggagtaaatcctcatgggctggct 148
>gb|CN520892.1|CN520892 GQ0107.B3_B21 GQ010 Populus trichocarpa x Populus deltoides cDNA
clone GQ0107_B21 5', mRNA sequence
Length = 793
Score = 52.0 bits (26), Expect = 3e-005
Identities = 44/50 (88%)
Strand = Plus / Minus
Query: 634 gcccagtcgtcggcgttccacaggctggagtagagcttcatcggctggct 683
|||||||| ||||||||||| ||||||||||| | | |||| ||||||||
Sbjct: 632 gcccagtcatcggcgttccagaggctggagtaaatcctcatgggctggct 583
>gb|CN549971.1|CN549971 GQ0243.B3_C07 GQ024 Populus trichocarpa x Populus deltoides cDNA
clone GQ0243_C07 5', mRNA sequence
Length = 514
Score = 52.0 bits (26), Expect = 3e-005
Identities = 44/50 (88%)
Strand = Plus / Plus
Query: 634 gcccagtcgtcggcgttccacaggctggagtagagcttcatcggctggct 683
|||||||| ||||||||||| ||||||||||| | | |||| ||||||||
Sbjct: 196 gcccagtcatcggcgttccagaggctggagtaaatcctcatgggctggct 245
>gb|CV230048.1|CV230048 WS01915.B21_E06 PT-DX-N-A-10 Populus trichocarpa cDNA clone
WS01915_E06 3', mRNA sequence
Length = 681
Score = 52.0 bits (26), Expect = 3e-005
Identities = 44/50 (88%)
Strand = Plus / Plus
Query: 634 gcccagtcgtcggcgttccacaggctggagtagagcttcatcggctggct 683
|||||||| ||||||||||| ||||||||||| | | |||| ||||||||
Sbjct: 541 gcccagtcatcggcgttccagaggctggagtaaatcctcatgggctggct 590
>gb|CV236170.1|CV236170 WS01223.B21_B16 PT-GT-FL-A-3 Populus trichocarpa cDNA clone
WS01223_B16 3', mRNA sequence
Length = 838
Score = 52.0 bits (26), Expect = 3e-005
Identities = 44/50 (88%)
Strand = Plus / Plus
Query: 634 gcccagtcgtcggcgttccacaggctggagtagagcttcatcggctggct 683
|||||||| ||||||||||| ||||||||||| | | |||| ||||||||
Sbjct: 533 gcccagtcatcggcgttccagaggctggagtaaatcctcatgggctggct 582
>gb|CV237332.1|CV237332 WS01227.B21.1_I01 PT-GT-FL-A-3 Populus trichocarpa cDNA clone
WS01227_I01 3', mRNA sequence
Length = 870
Score = 52.0 bits (26), Expect = 3e-005
Identities = 44/50 (88%)
Strand = Plus / Plus
Query: 634 gcccagtcgtcggcgttccacaggctggagtagagcttcatcggctggct 683
|||||||| ||||||||||| ||||||||||| | | |||| ||||||||
Sbjct: 533 gcccagtcatcggcgttccagaggctggagtaaatcctcatgggctggct 582
>gb|CV237380.1|CV237380 WS01227.B21.1_L19 PT-GT-FL-A-3 Populus trichocarpa cDNA clone
WS01227_L19 3', mRNA sequence
Length = 859
Score = 52.0 bits (26), Expect = 3e-005
Identities = 80/98 (81%)
Strand = Plus / Plus
Query: 589 aagggcgcgttggaccagtccgtcttctcgcgcccgccgcgggtcgcccagtcgtcggcg 648
||||| || ||||||||||| |||||||| | || || | ||| ||||| || ||||||
Sbjct: 572 aagggtgccttggaccagtctgtcttctcaagtccacccctggtagcccaatcatcggcg 631
Query: 649 ttccacaggctggagtagagcttcatcggctggctgaa 686
||||| ||||| ||||| | |||||| |||||| ||||
Sbjct: 632 ttccataggcttgagtatatcttcattggctggttgaa 669
Score = 46.1 bits (23), Expect = 0.002
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 412 gtgcagtagttgtagatggtgta 434
|||||||||||||||||||||||
Sbjct: 395 gtgcagtagttgtagatggtgta 417
Score = 40.1 bits (20), Expect = 0.12
Identities = 35/40 (87%)
Strand = Plus / Plus
Query: 717 gttcttgaacacccggatcggcacgtcgtccacgaagaac 756
|||||||||||| | ||| ||||| || ||||||||||||
Sbjct: 697 gttcttgaacactctgattggcacatcatccacgaagaac 736
>gb|CV239033.1|CV239033 WS0231.B21_B22 PT-MB-A-13 Populus trichocarpa cDNA clone WS0231_B22
3', mRNA sequence
Length = 753
Score = 52.0 bits (26), Expect = 3e-005
Identities = 80/98 (81%)
Strand = Plus / Plus
Query: 589 aagggcgcgttggaccagtccgtcttctcgcgcccgccgcgggtcgcccagtcgtcggcg 648
||||| || ||||||||||| |||||||| | || || | ||| ||||| || ||||||
Sbjct: 574 aagggtgccttggaccagtctgtcttctcaagtccacccctggtagcccaatcatcggcg 633
Query: 649 ttccacaggctggagtagagcttcatcggctggctgaa 686
||||| ||||| ||||| | |||||| |||||| ||||
Sbjct: 634 ttccataggcttgagtatatcttcattggctggttgaa 671
Score = 46.1 bits (23), Expect = 0.002
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 412 gtgcagtagttgtagatggtgta 434
|||||||||||||||||||||||
Sbjct: 397 gtgcagtagttgtagatggtgta 419
Score = 40.1 bits (20), Expect = 0.12
Identities = 35/40 (87%)
Strand = Plus / Plus
Query: 717 gttcttgaacacccggatcggcacgtcgtccacgaagaac 756
|||||||||||| | ||| ||||| || ||||||||||||
Sbjct: 699 gttcttgaacactctgattggcacatcatccacgaagaac 738
>gb|CV240925.1|CV240925 WS02510.B21_L20 PT-MB-N-A-15 Populus trichocarpa cDNA clone
WS02510_L20 3', mRNA sequence
Length = 761
Score = 52.0 bits (26), Expect = 3e-005
Identities = 80/98 (81%)
Strand = Plus / Plus
Query: 589 aagggcgcgttggaccagtccgtcttctcgcgcccgccgcgggtcgcccagtcgtcggcg 648
||||| || ||||||||||| |||||||| | || || | ||| ||||| || ||||||
Sbjct: 574 aagggtgccttggaccagtctgtcttctcaagtccacccctggtagcccaatcatcggcg 633
Query: 649 ttccacaggctggagtagagcttcatcggctggctgaa 686
||||| ||||| ||||| | |||||| |||||| ||||
Sbjct: 634 ttccataggcttgagtatatcttcattggctggttgaa 671
Score = 46.1 bits (23), Expect = 0.002
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 412 gtgcagtagttgtagatggtgta 434
|||||||||||||||||||||||
Sbjct: 397 gtgcagtagttgtagatggtgta 419
Score = 40.1 bits (20), Expect = 0.12
Identities = 35/40 (87%)
Strand = Plus / Plus
Query: 717 gttcttgaacacccggatcggcacgtcgtccacgaagaac 756
|||||||||||| | ||| ||||| || ||||||||||||
Sbjct: 699 gttcttgaacactctgattggcacatcatccacgaagaac 738
>gb|CV244228.1|CV244228 WS0254.B21_B11 PT-MB-N-A-15 Populus trichocarpa cDNA clone
WS0254_B11 3', mRNA sequence
Length = 825
Score = 52.0 bits (26), Expect = 3e-005
Identities = 80/98 (81%)
Strand = Plus / Plus
Query: 589 aagggcgcgttggaccagtccgtcttctcgcgcccgccgcgggtcgcccagtcgtcggcg 648
||||| || ||||||||||| |||||||| | || || | ||| ||||| || ||||||
Sbjct: 574 aagggtgccttggaccagtctgtcttctcaagtccacccctggtagcccaatcatcggcg 633
Query: 649 ttccacaggctggagtagagcttcatcggctggctgaa 686
||||| ||||| ||||| | |||||| |||||| ||||
Sbjct: 634 ttccataggcttgagtatatcttcattggctggttgaa 671
Score = 46.1 bits (23), Expect = 0.002
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 412 gtgcagtagttgtagatggtgta 434
|||||||||||||||||||||||
Sbjct: 397 gtgcagtagttgtagatggtgta 419
Score = 40.1 bits (20), Expect = 0.12
Identities = 35/40 (87%)
Strand = Plus / Plus
Query: 717 gttcttgaacacccggatcggcacgtcgtccacgaagaac 756
|||||||||||| | ||| ||||| || ||||||||||||
Sbjct: 699 gttcttgaacactctgattggcacatcatccacgaagaac 738
>gb|CV248079.1|CV248079 WS0112.B21_F17 PT-P-FL-A-2 Populus trichocarpa cDNA clone
WS0112_F17 3', mRNA sequence
Length = 710
Score = 52.0 bits (26), Expect = 3e-005
Identities = 44/50 (88%)
Strand = Plus / Plus
Query: 634 gcccagtcgtcggcgttccacaggctggagtagagcttcatcggctggct 683
|||||||| ||||||||||| ||||||||||| | | |||| ||||||||
Sbjct: 532 gcccagtcatcggcgttccagaggctggagtaaatcctcatgggctggct 581
>gb|CV253198.1|CV253198 WS0221.B21_C22 PTxD-ICC-A-12 Populus trichocarpa x Populus
deltoides cDNA clone WS0221_C22 3', mRNA sequence
Length = 703
Score = 52.0 bits (26), Expect = 3e-005
Identities = 44/50 (88%)
Strand = Plus / Plus
Query: 634 gcccagtcgtcggcgttccacaggctggagtagagcttcatcggctggct 683
|||||||| ||||||||||| ||||||||||| | | |||| ||||||||
Sbjct: 536 gcccagtcatcggcgttccagaggctggagtaaatcctcatgggctggct 585
>gb|CV253328.1|CV253328 WS0221.B21_J11 PTxD-ICC-A-12 Populus trichocarpa x Populus
deltoides cDNA clone WS0221_J11 3', mRNA sequence
Length = 686
Score = 52.0 bits (26), Expect = 3e-005
Identities = 44/50 (88%)
Strand = Plus / Plus
Query: 634 gcccagtcgtcggcgttccacaggctggagtagagcttcatcggctggct 683
|||||||| ||||||||||| ||||||||||| | | |||| ||||||||
Sbjct: 578 gcccagtcatcggcgttccaaaggctggagtaaatcctcatgggctggct 627
>gb|CV253554.1|CV253554 WS0222.B21_E22 PTxD-ICC-A-12 Populus trichocarpa x Populus
deltoides cDNA clone WS0222_E22 3', mRNA sequence
Length = 701
Score = 52.0 bits (26), Expect = 3e-005
Identities = 44/50 (88%)
Strand = Plus / Plus
Query: 634 gcccagtcgtcggcgttccacaggctggagtagagcttcatcggctggct 683
|||||||| ||||||||||| ||||||||||| | | |||| ||||||||
Sbjct: 534 gcccagtcatcggcgttccagaggctggagtaaatcctcatgggctggct 583
>gb|CV256088.1|CV256088 WS0242.B21_O11 PTxD-ICC-N-A-14 Populus trichocarpa x Populus
deltoides cDNA clone WS0242_O11 3', mRNA sequence
Length = 909
Score = 52.0 bits (26), Expect = 3e-005
Identities = 44/50 (88%)
Strand = Plus / Plus
Query: 634 gcccagtcgtcggcgttccacaggctggagtagagcttcatcggctggct 683
|||||||| ||||||||||| ||||||||||| | | |||| ||||||||
Sbjct: 533 gcccagtcatcggcgttccagaggctggagtaaatcctcatgggctggct 582
>gb|CV264446.1|CV264446 WS02024.B21_I21 PTxN-IB-N-A-11 Populus trichocarpa x Populus nigra
cDNA clone WS02024_I21 3', mRNA sequence
Length = 952
Score = 52.0 bits (26), Expect = 3e-005
Identities = 80/98 (81%)
Strand = Plus / Plus
Query: 589 aagggcgcgttggaccagtccgtcttctcgcgcccgccgcgggtcgcccagtcgtcggcg 648
||||| || ||||||||||| |||||||| | || || | ||| ||||| || ||||||
Sbjct: 574 aagggtgccttggaccagtctgtcttctcaagtccacccctggtagcccaatcatcggcg 633
Query: 649 ttccacaggctggagtagagcttcatcggctggctgaa 686
||||| ||||| ||||| | |||||| |||||| ||||
Sbjct: 634 ttccataggcttgagtatatcttcattggctggttgaa 671
Score = 40.1 bits (20), Expect = 0.12
Identities = 35/40 (87%)
Strand = Plus / Plus
Query: 717 gttcttgaacacccggatcggcacgtcgtccacgaagaac 756
|||||||||||| | ||| ||||| || ||||||||||||
Sbjct: 699 gttcttgaacactctgattggcacatcatccacgaagaac 738
Score = 38.2 bits (19), Expect = 0.49
Identities = 22/23 (95%)
Strand = Plus / Plus
Query: 412 gtgcagtagttgtagatggtgta 434
|||||||| ||||||||||||||
Sbjct: 397 gtgcagtaattgtagatggtgta 419
>gb|CV270106.1|CV270106 WS0151.B21_B16 PTxN-IB-A-6 Populus trichocarpa x Populus nigra cDNA
clone WS0151_B16 3', mRNA sequence
Length = 875
Score = 52.0 bits (26), Expect = 3e-005
Identities = 44/50 (88%)
Strand = Plus / Plus
Query: 634 gcccagtcgtcggcgttccacaggctggagtagagcttcatcggctggct 683
|||||||| ||||||||||| ||||||||||| | | |||| ||||||||
Sbjct: 547 gcccagtcatcggcgttccagaggctggagtaaatcctcatgggctggct 596
>gb|CV274385.1|CV274385 WS0173.B21_B15 PTxD-NR-A-8 Populus trichocarpa x Populus deltoides
cDNA clone WS0173_B15 3', mRNA sequence
Length = 891
Score = 52.0 bits (26), Expect = 3e-005
Identities = 80/98 (81%)
Strand = Plus / Plus
Query: 589 aagggcgcgttggaccagtccgtcttctcgcgcccgccgcgggtcgcccagtcgtcggcg 648
||||| || ||||||||||| |||||||| | || || | ||| ||||| || ||||||
Sbjct: 574 aagggtgccttggaccagtctgtcttctcaagtccacccctggtagcccaatcatcggcg 633
Query: 649 ttccacaggctggagtagagcttcatcggctggctgaa 686
||||| ||||| ||||| | |||||| |||||| ||||
Sbjct: 634 ttccataggcttgagtatatcttcattggctggttgaa 671
Score = 46.1 bits (23), Expect = 0.002
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 412 gtgcagtagttgtagatggtgta 434
|||||||||||||||||||||||
Sbjct: 397 gtgcagtagttgtagatggtgta 419
Score = 40.1 bits (20), Expect = 0.12
Identities = 35/40 (87%)
Strand = Plus / Plus
Query: 717 gttcttgaacacccggatcggcacgtcgtccacgaagaac 756
|||||||||||| | ||| ||||| || ||||||||||||
Sbjct: 699 gttcttgaacactctgattggcacatcatccacgaagaac 738
>gb|CX170885.1|CX170885 C04_69-47_06.ab1 leaf inoculated with Marssonia pathogen of Populus
deltoides Populus deltoides cDNA, mRNA sequence
Length = 697
Score = 52.0 bits (26), Expect = 3e-005
Identities = 80/98 (81%)
Strand = Plus / Minus
Query: 589 aagggcgcgttggaccagtccgtcttctcgcgcccgccgcgggtcgcccagtcgtcggcg 648
||||| || ||||||||||| |||||||| | || || | ||| ||||| || ||||||
Sbjct: 132 aagggtgccttggaccagtctgtcttctcaagtccacccctggtagcccaatcatcggcg 73
Query: 649 ttccacaggctggagtagagcttcatcggctggctgaa 686
||||| ||||| ||||| | |||||| |||||| ||||
Sbjct: 72 ttccataggcttgagtatatcttcattggctggttgaa 35
Score = 46.1 bits (23), Expect = 0.002
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 412 gtgcagtagttgtagatggtgta 434
|||||||||||||||||||||||
Sbjct: 309 gtgcagtagttgtagatggtgta 287
Database: Populus_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:49 PM
Number of letters in database: 203,408,664
Number of sequences in database: 369,679
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 55,146
Number of Sequences: 369679
Number of extensions: 55146
Number of successful extensions: 14690
Number of sequences better than 0.5: 111
Number of HSP's better than 0.5 without gapping: 109
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 14370
Number of HSP's gapped (non-prelim): 276
length of query: 786
length of database: 203,408,664
effective HSP length: 19
effective length of query: 767
effective length of database: 196,384,763
effective search space: 150627113221
effective search space used: 150627113221
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)