BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2591248.2.1
(1222 letters)
Database: Populus_nucl_with_EST.fasta
369,679 sequences; 203,408,664 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|BU877721.1|BU877721 V038bE02 Populus flower cDNA library... 58 8e-007
gb|CK114145.1|CK114145 V038E02 Populus male catkins cDNA li... 58 8e-007
gb|CV253984.1|CV253984 WS0223.B21_K09 PTxD-ICC-A-12 Populus... 58 8e-007
gb|DN501932.1|DN501932 V038E02.5pR Populus male catkins cDN... 58 8e-007
gb|DT513650.1|DT513650 WS02422.B21_K01 PTxD-ICC-N-A-14 Popu... 58 8e-007
gb|CX173133.1|CX173133 G02_69-103_14.ab1 leaf inoculated wi... 56 3e-006
gb|DT525548.1|DT525548 WS02045.C21_K07 PTxN-IB-N-A-11 Popul... 46 0.003
>gb|BU877721.1|BU877721 V038bE02 Populus flower cDNA library Populus trichocarpa cDNA 5
prime, mRNA sequence
Length = 600
Score = 58.0 bits (29), Expect = 8e-007
Identities = 53/61 (86%)
Strand = Plus / Minus
Query: 897 tcctttgagatgaggacgttgatgccggcgtgcttgttgtcccagccgaactcgttgatg 956
||||| || ||||||||||| ||||| || |||||||| ||||| |||||||| ||||||
Sbjct: 474 tccttggaaatgaggacgttaatgccagcatgcttgttatcccacccgaactcattgatg 415
Query: 957 g 957
|
Sbjct: 414 g 414
>gb|CK114145.1|CK114145 V038E02 Populus male catkins cDNA library Populus trichocarpa cDNA
clone V038E02 5', mRNA sequence
Length = 784
Score = 58.0 bits (29), Expect = 8e-007
Identities = 53/61 (86%)
Strand = Plus / Minus
Query: 897 tcctttgagatgaggacgttgatgccggcgtgcttgttgtcccagccgaactcgttgatg 956
||||| || ||||||||||| ||||| || |||||||| ||||| |||||||| ||||||
Sbjct: 494 tccttggaaatgaggacgttaatgccagcatgcttgttatcccacccgaactcattgatg 435
Query: 957 g 957
|
Sbjct: 434 g 434
>gb|CV253984.1|CV253984 WS0223.B21_K09 PTxD-ICC-A-12 Populus trichocarpa x Populus
deltoides cDNA clone WS0223_K09 3', mRNA sequence
Length = 758
Score = 58.0 bits (29), Expect = 8e-007
Identities = 53/61 (86%)
Strand = Plus / Plus
Query: 897 tcctttgagatgaggacgttgatgccggcgtgcttgttgtcccagccgaactcgttgatg 956
||||| || ||||||||||| ||||| || |||||||| ||||| |||||||| ||||||
Sbjct: 594 tccttggaaatgaggacgttaatgccagcatgcttgttatcccacccgaactcattgatg 653
Query: 957 g 957
|
Sbjct: 654 g 654
>gb|DN501932.1|DN501932 V038E02.5pR Populus male catkins cDNA library Populus trichocarpa
cDNA clone V038E02 5', mRNA sequence
Length = 757
Score = 58.0 bits (29), Expect = 8e-007
Identities = 53/61 (86%)
Strand = Plus / Minus
Query: 897 tcctttgagatgaggacgttgatgccggcgtgcttgttgtcccagccgaactcgttgatg 956
||||| || ||||||||||| ||||| || |||||||| ||||| |||||||| ||||||
Sbjct: 494 tccttggaaatgaggacgttaatgccagcatgcttgttatcccacccgaactcattgatg 435
Query: 957 g 957
|
Sbjct: 434 g 434
>gb|DT513650.1|DT513650 WS02422.B21_K01 PTxD-ICC-N-A-14 Populus trichocarpa x Populus
deltoides cDNA clone WS02422_K01 3', mRNA sequence
Length = 888
Score = 58.0 bits (29), Expect = 8e-007
Identities = 53/61 (86%)
Strand = Plus / Plus
Query: 897 tcctttgagatgaggacgttgatgccggcgtgcttgttgtcccagccgaactcgttgatg 956
||||| || ||||||||||| ||||| || |||||||| ||||| |||||||| ||||||
Sbjct: 740 tccttggaaatgaggacgttaatgccagcatgcttgttatcccacccgaactcattgatg 799
Query: 957 g 957
|
Sbjct: 800 g 800
>gb|CX173133.1|CX173133 G02_69-103_14.ab1 leaf inoculated with Marssonia pathogen of
Populus deltoides Populus deltoides cDNA, mRNA sequence
Length = 644
Score = 56.0 bits (28), Expect = 3e-006
Identities = 46/52 (88%)
Strand = Plus / Minus
Query: 906 atgaggacgttgatgccggcgtgcttgttgtcccagccgaactcgttgatgg 957
||||||||||| ||||| || |||||||| ||||| |||||||| |||||||
Sbjct: 293 atgaggacgttaatgccagcatgcttgttatcccacccgaactcattgatgg 242
>gb|DT525548.1|DT525548 WS02045.C21_K07 PTxN-IB-N-A-11 Populus trichocarpa x Populus nigra
cDNA clone WS02045_K07 3', mRNA sequence
Length = 897
Score = 46.1 bits (23), Expect = 0.003
Identities = 44/51 (86%)
Strand = Plus / Plus
Query: 897 tcctttgagatgaggacgttgatgccggcgtgcttgttgtcccagccgaac 947
||||| || ||||||||||| ||||| || |||||||| ||||| ||||||
Sbjct: 846 tccttggaaatgaggacgttaatgccagcatgcttgttatcccacccgaac 896
Database: Populus_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:49 PM
Number of letters in database: 203,408,664
Number of sequences in database: 369,679
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 78,341
Number of Sequences: 369679
Number of extensions: 78341
Number of successful extensions: 19036
Number of sequences better than 0.5: 7
Number of HSP's better than 0.5 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 19020
Number of HSP's gapped (non-prelim): 16
length of query: 1222
length of database: 203,408,664
effective HSP length: 19
effective length of query: 1203
effective length of database: 196,384,763
effective search space: 236250869889
effective search space used: 236250869889
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)