BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2591194.2.1
(591 letters)
Database: Populus_nucl_with_EST.fasta
369,679 sequences; 203,408,664 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CV232951.1|CV232951 WS0199.B21_C22 PT-DX-N-A-10 Populus ... 66 2e-009
gb|CX282655.1|CX282655 18-2.5.2 Populus tremula X Populus a... 58 4e-007
gb|BP934259.1|BP934259 BP934259 full-length enriched poplar... 58 4e-007
gb|BU831146.1|BU831146 T017G12 Populus apical shoot cDNA li... 54 6e-006
gb|BU832092.1|BU832092 T029C12 Populus apical shoot cDNA li... 54 6e-006
gb|CA933814.1|CA933814 MTU3TS.P13.A11 Aspen stem cDNA Libra... 54 6e-006
gb|CB240309.1|CB240309 PopSC00287 Poplar SC cDNA library Po... 54 6e-006
gb|CK092927.1|CK092927 G100P57.3pR Populus tension wood cDN... 54 6e-006
gb|CV225431.1|CV225431 WS0161.B21_G02 PT-DX-A-7 Populus tri... 54 6e-006
gb|CX175429.1|CX175429 D03_69-77_07.ab1 leaf inoculated wit... 54 6e-006
gb|CX655663.1|CX655663 PO02038B07 Poplar SC cDNA library Po... 54 6e-006
gb|BP934231.1|BP934231 BP934231 full-length enriched poplar... 54 6e-006
gb|DT470286.1|DT470286 WS01920.C21_G17 PT-DX-N-A-10 Populus... 54 6e-006
gb|DT512199.1|DT512199 WS02418.B21_K02 PTxD-ICC-N-A-14 Popu... 54 6e-006
gb|DT520978.1|DT520978 WS02033.B21_B04 PTxN-IB-N-A-11 Popul... 54 6e-006
gb|DT525144.1|DT525144 WS02044.C21_J01 PTxN-IB-N-A-11 Popul... 54 6e-006
gb|DT516575.1|DT516575 WS02431.B21_M23 PTxD-ICC-N-A-14 Popu... 52 2e-005
gb|CV238057.1|CV238057 WS0125.B21_C06 PT-GT-FL-A-3 Populus ... 50 1e-004
gb|DN483723.1|DN483723 PSO202D09 Populus tomentiglandulosa ... 50 1e-004
gb|DN489317.1|DN489317 T023D01.3pR Populus shoot meristem c... 50 1e-004
gb|AC149575.1| Populus trichocarpa clone Pop1-41G18, comple... 50 1e-004
gb|BI131350.1|BI131350 G119P62Y Populus cambium cDNA librar... 46 0.002
gb|BU812401.1|BU812401 UL95TH09 Populus leaf cDNA library P... 46 0.002
gb|BU812908.1|BU812908 N002H02 Populus bark cDNA library Po... 46 0.002
gb|CA927109.1|CA927109 MTU6CR.P5.A10 Aspen root cDNA Librar... 46 0.002
gb|BU879578.1|BU879578 V062A01 Populus flower cDNA library ... 42 0.023
gb|BU891297.1|BU891297 P048D08 Populus petioles cDNA librar... 42 0.023
gb|CN523502.1|CN523502 GQ015M07.T3_B08 GQ015 Populus tricho... 42 0.023
gb|DN492283.1|DN492283 V062A01.3pR Populus male catkins cDN... 42 0.023
gb|DT476539.1|DT476539 WS01229.B21_P03 PT-GT-FL-A-3 Populus... 42 0.023
gb|DT485142.1|DT485142 WS02527.B21_G13 PT-MB-N-A-15 Populus... 42 0.023
gb|DT511310.1|DT511310 WS02416.B21_B23 PTxD-ICC-N-A-14 Popu... 42 0.023
gb|DT518220.1|DT518220 WS02436.B21_I16 PTxD-ICC-N-A-14 Popu... 42 0.023
gb|BU829453.1|BU829453 K040P92P Populus apical shoot cDNA l... 38 0.37
gb|CK089922.1|CK089922 C045P15.3pR Populus strain T89 leave... 38 0.37
gb|CV230926.1|CV230926 WS0193.B21_A09 PT-DX-N-A-10 Populus ... 38 0.37
gb|CV256643.1|CV256643 WS0244.B21_G18 PTxD-ICC-N-A-14 Popul... 38 0.37
gb|CX655574.1|CX655574 PO02036F11 Poplar SC cDNA library Po... 38 0.37
gb|DT508892.1|DT508892 WS02422.BR_D15 PTxD-ICC-N-A-14 Popul... 38 0.37
gb|DT510085.1|DT510085 WS02425.BR_I20 PTxD-ICC-N-A-14 Popul... 38 0.37
gb|DT513501.1|DT513501 WS02422.B21_D15 PTxD-ICC-N-A-14 Popu... 38 0.37
gb|DT514705.1|DT514705 WS02425.B21_I20 PTxD-ICC-N-A-14 Popu... 38 0.37
gb|DT517583.1|DT517583 WS02434.B21_L14 PTxD-ICC-N-A-14 Popu... 38 0.37
>gb|CV232951.1|CV232951 WS0199.B21_C22 PT-DX-N-A-10 Populus trichocarpa cDNA clone
WS0199_C22 3', mRNA sequence
Length = 634
Score = 65.9 bits (33), Expect = 2e-009
Identities = 42/45 (93%)
Strand = Plus / Plus
Query: 490 cctcacgttccacatccccacgttgtccagcggcatgtagatagc 534
||||| ||||||||||||||||||||||||||| ||||| |||||
Sbjct: 497 cctcaagttccacatccccacgttgtccagcggaatgtatatagc 541
>gb|CX282655.1|CX282655 18-2.5.2 Populus tremula X Populus alba developing vegetative bud
cDNA Library Populus alba x Populus tremula cDNA clone
170, mRNA sequence
Length = 262
Score = 58.0 bits (29), Expect = 4e-007
Identities = 83/101 (82%)
Strand = Plus / Minus
Query: 445 gaggtagaactgctggccgaggtactgcctggcccagctctcggacctcacgttccacat 504
||||||||||||||| || | || ||||| |||||| | || ||||| | |||||||||
Sbjct: 141 gaggtagaactgctgacctaaatattgcctagcccagttttctgaccttatgttccacat 82
Query: 505 ccccacgttgtccagcggcatgtagatagccgtccatgact 545
|| ||||||||||| | |||||| || || ||||||||||
Sbjct: 81 tcctacgttgtccagagccatgtaaatcgcagtccatgact 41
>gb|BP934259.1|BP934259 BP934259 full-length enriched poplar cDNA library Populus nigra
cDNA clone PnFL1-062_H19.r 3', mRNA sequence
Length = 526
Score = 58.0 bits (29), Expect = 4e-007
Identities = 32/33 (96%)
Strand = Plus / Plus
Query: 490 cctcacgttccacatccccacgttgtccagcgg 522
||||| |||||||||||||||||||||||||||
Sbjct: 450 cctcaagttccacatccccacgttgtccagcgg 482
>gb|BU831146.1|BU831146 T017G12 Populus apical shoot cDNA library Populus tremula x Populus
tremuloides cDNA 5 prime, mRNA sequence
Length = 695
Score = 54.0 bits (27), Expect = 6e-006
Identities = 45/51 (88%)
Strand = Plus / Minus
Query: 490 cctcacgttccacatccccacgttgtccagcggcatgtagatagccgtcca 540
||||| ||||||||||||||||||||| ||||| || || ||||| |||||
Sbjct: 212 cctcaagttccacatccccacgttgtcgagcggaatatatatagcagtcca 162
>gb|BU832092.1|BU832092 T029C12 Populus apical shoot cDNA library Populus tremula x Populus
tremuloides cDNA 5 prime, mRNA sequence
Length = 780
Score = 54.0 bits (27), Expect = 6e-006
Identities = 45/51 (88%)
Strand = Plus / Minus
Query: 490 cctcacgttccacatccccacgttgtccagcggcatgtagatagccgtcca 540
||||| ||||||||||||||||||||| ||||| || || ||||| |||||
Sbjct: 387 cctcaagttccacatccccacgttgtcgagcggaatatatatagcagtcca 337
>gb|CA933814.1|CA933814 MTU3TS.P13.A11 Aspen stem cDNA Library Populus tremuloides cDNA,
mRNA sequence
Length = 594
Score = 54.0 bits (27), Expect = 6e-006
Identities = 45/51 (88%)
Strand = Plus / Minus
Query: 490 cctcacgttccacatccccacgttgtccagcggcatgtagatagccgtcca 540
||||| ||||||||||||||||||||| ||||| || || ||||| |||||
Sbjct: 102 cctcaagttccacatccccacgttgtcgagcggaatatatatagcagtcca 52
>gb|CB240309.1|CB240309 PopSC00287 Poplar SC cDNA library Populus alba x Populus tremula
var. glandulosa cDNA clone PopSC00287, mRNA sequence
Length = 473
Score = 54.0 bits (27), Expect = 6e-006
Identities = 45/51 (88%)
Strand = Plus / Minus
Query: 490 cctcacgttccacatccccacgttgtccagcggcatgtagatagccgtcca 540
||||| ||||||||||||||||||||| ||||| || || ||||| |||||
Sbjct: 220 cctcaagttccacatccccacgttgtcgagcggaatatatatagcagtcca 170
>gb|CK092927.1|CK092927 G100P57.3pR Populus tension wood cDNA library Populus tremula x
Populus tremuloides cDNA clone G100P57 3', mRNA sequence
Length = 826
Score = 54.0 bits (27), Expect = 6e-006
Identities = 45/51 (88%)
Strand = Plus / Plus
Query: 490 cctcacgttccacatccccacgttgtccagcggcatgtagatagccgtcca 540
||||| ||||||||||||||||||||| ||||| || || ||||| |||||
Sbjct: 512 cctcaagttccacatccccacgttgtcgagcggaatatatatagcagtcca 562
>gb|CV225431.1|CV225431 WS0161.B21_G02 PT-DX-A-7 Populus trichocarpa cDNA clone WS0161_G02
3', mRNA sequence
Length = 578
Score = 54.0 bits (27), Expect = 6e-006
Identities = 45/51 (88%)
Strand = Plus / Plus
Query: 490 cctcacgttccacatccccacgttgtccagcggcatgtagatagccgtcca 540
||||| ||||||||||||||||||||| ||||| || || ||||| |||||
Sbjct: 511 cctcaagttccacatccccacgttgtcgagcggaatatatatagcggtcca 561
>gb|CX175429.1|CX175429 D03_69-77_07.ab1 leaf inoculated with Marssonia pathogen of Populus
deltoides Populus deltoides cDNA, mRNA sequence
Length = 572
Score = 54.0 bits (27), Expect = 6e-006
Identities = 45/51 (88%)
Strand = Plus / Minus
Query: 490 cctcacgttccacatccccacgttgtccagcggcatgtagatagccgtcca 540
||||| ||||||||||||||||||||| ||||| || || ||||| |||||
Sbjct: 78 cctcaagttccacatccccacgttgtcgagcggaatatatatagcggtcca 28
>gb|CX655663.1|CX655663 PO02038B07 Poplar SC cDNA library Populus alba x Populus tremula
var. glandulosa cDNA clone PO02038B07 5', mRNA sequence
Length = 576
Score = 54.0 bits (27), Expect = 6e-006
Identities = 45/51 (88%)
Strand = Plus / Minus
Query: 490 cctcacgttccacatccccacgttgtccagcggcatgtagatagccgtcca 540
||||| ||||||||||||||||||||| ||||| || || ||||| |||||
Sbjct: 562 cctcaagttccacatccccacgttgtcgagcggaatatatatagcagtcca 512
>gb|BP934231.1|BP934231 BP934231 full-length enriched poplar cDNA library Populus nigra
cDNA clone PnFL1-062_A03.r 3', mRNA sequence
Length = 706
Score = 54.0 bits (27), Expect = 6e-006
Identities = 45/51 (88%)
Strand = Plus / Plus
Query: 490 cctcacgttccacatccccacgttgtccagcggcatgtagatagccgtcca 540
||||| ||||||||||||||||||||| ||||| || || ||||| |||||
Sbjct: 450 cctcaagttccacatccccacgttgtcgagcggaatatatatagcggtcca 500
>gb|DT470286.1|DT470286 WS01920.C21_G17 PT-DX-N-A-10 Populus trichocarpa cDNA clone
WS01920_G17 3', mRNA sequence
Length = 560
Score = 54.0 bits (27), Expect = 6e-006
Identities = 45/51 (88%)
Strand = Plus / Plus
Query: 490 cctcacgttccacatccccacgttgtccagcggcatgtagatagccgtcca 540
||||| ||||||||||||||||||||| ||||| || || ||||| |||||
Sbjct: 495 cctcaagttccacatccccacgttgtcgagcggaatatatatagcggtcca 545
>gb|DT512199.1|DT512199 WS02418.B21_K02 PTxD-ICC-N-A-14 Populus trichocarpa x Populus
deltoides cDNA clone WS02418_K02 3', mRNA sequence
Length = 927
Score = 54.0 bits (27), Expect = 6e-006
Identities = 45/51 (88%)
Strand = Plus / Plus
Query: 490 cctcacgttccacatccccacgttgtccagcggcatgtagatagccgtcca 540
||||| ||||||||||||||||||||| ||||| || || ||||| |||||
Sbjct: 512 cctcaagttccacatccccacgttgtcgagcggaatatatatagcagtcca 562
>gb|DT520978.1|DT520978 WS02033.B21_B04 PTxN-IB-N-A-11 Populus trichocarpa x Populus nigra
cDNA clone WS02033_B04 3', mRNA sequence
Length = 868
Score = 54.0 bits (27), Expect = 6e-006
Identities = 45/51 (88%)
Strand = Plus / Plus
Query: 490 cctcacgttccacatccccacgttgtccagcggcatgtagatagccgtcca 540
||||| ||||||||||||||||||||| ||||| || || ||||| |||||
Sbjct: 355 cctcaagttccacatccccacgttgtcgagcggaatatatatagcagtcca 405
>gb|DT525144.1|DT525144 WS02044.C21_J01 PTxN-IB-N-A-11 Populus trichocarpa x Populus nigra
cDNA clone WS02044_J01 3', mRNA sequence
Length = 868
Score = 54.0 bits (27), Expect = 6e-006
Identities = 45/51 (88%)
Strand = Plus / Plus
Query: 490 cctcacgttccacatccccacgttgtccagcggcatgtagatagccgtcca 540
||||| ||||||||||||||||||||| ||||| || || ||||| |||||
Sbjct: 355 cctcaagttccacatccccacgttgtcgagcggaatatatatagcagtcca 405
>gb|DT516575.1|DT516575 WS02431.B21_M23 PTxD-ICC-N-A-14 Populus trichocarpa x Populus
deltoides cDNA clone WS02431_M23 3', mRNA sequence
Length = 712
Score = 52.0 bits (26), Expect = 2e-005
Identities = 95/118 (80%)
Strand = Plus / Plus
Query: 428 gccggcgagtagacgcggaggtagaactgctggccgaggtactgcctggcccagctctcg 487
||||| ||||| || | ||||||||||||||| || | || ||||| |||||| | ||
Sbjct: 319 gccggagagtaaaccctgaggtagaactgctgacctaaatattgcctagcccagttttct 378
Query: 488 gacctcacgttccacatccccacgttgtccagcggcatgtagatagccgtccatgact 545
||||| | ||||||||| || |||||||||| | |||||| || || ||||||||||
Sbjct: 379 gaccttatgttccacattccaacgttgtccaaagccatgtaaatcgcagtccatgact 436
>gb|CV238057.1|CV238057 WS0125.B21_C06 PT-GT-FL-A-3 Populus trichocarpa cDNA clone
WS0125_C06 3', mRNA sequence
Length = 697
Score = 50.1 bits (25), Expect = 1e-004
Identities = 82/101 (81%)
Strand = Plus / Plus
Query: 445 gaggtagaactgctggccgaggtactgcctggcccagctctcggacctcacgttccacat 504
||||||||||||||| || | || ||||| |||||| | || ||||| | |||||||||
Sbjct: 335 gaggtagaactgctgacctaaatattgcctagcccagttttctgaccttatgttccacat 394
Query: 505 ccccacgttgtccagcggcatgtagatagccgtccatgact 545
|| |||||||||| | |||||| || || ||||||||||
Sbjct: 395 tccaacgttgtccaaagccatgtaaatcgcagtccatgact 435
>gb|DN483723.1|DN483723 PSO202D09 Populus tomentiglandulosa T. Lee cDNA library Populus
tomentiglandulosa cDNA, mRNA sequence
Length = 1202
Score = 50.1 bits (25), Expect = 1e-004
Identities = 40/45 (88%)
Strand = Plus / Minus
Query: 496 gttccacatccccacgttgtccagcggcatgtagatagccgtcca 540
||||||||||||||||||||| ||||| || || ||||| |||||
Sbjct: 796 gttccacatccccacgttgtcgagcggaatatatatagcagtcca 752
>gb|DN489317.1|DN489317 T023D01.3pR Populus shoot meristem cDNA library Populus tremula x
Populus tremuloides cDNA clone T023D01 3', mRNA sequence
Length = 745
Score = 50.1 bits (25), Expect = 1e-004
Identities = 82/101 (81%)
Strand = Plus / Plus
Query: 445 gaggtagaactgctggccgaggtactgcctggcccagctctcggacctcacgttccacat 504
||||||||||||||| || | || ||||| |||||| | || ||||| | |||||||||
Sbjct: 216 gaggtagaactgctgacctaaatattgcctagcccagttttctgaccttatgttccacat 275
Query: 505 ccccacgttgtccagcggcatgtagatagccgtccatgact 545
|| |||||||||| | |||||| || || ||||||||||
Sbjct: 276 tcctacgttgtccaaagccatgtaaatcgcagtccatgact 316
>gb|AC149575.1| Populus trichocarpa clone Pop1-41G18, complete sequence
Length = 111678
Score = 50.1 bits (25), Expect = 1e-004
Identities = 82/101 (81%)
Strand = Plus / Plus
Query: 445 gaggtagaactgctggccgaggtactgcctggcccagctctcggacctcacgttccacat 504
||||||||||||||| || | || ||||| |||||| | || ||||| | |||||||||
Sbjct: 49252 gaggtagaactgctgacctaaatattgcctagcccagttttctgaccttatgttccacat 49311
Query: 505 ccccacgttgtccagcggcatgtagatagccgtccatgact 545
|| |||||||||| | |||||| || || ||||||||||
Sbjct: 49312 tccaacgttgtccaaagccatgtaaatcgcagtccatgact 49352
>gb|BI131350.1|BI131350 G119P62Y Populus cambium cDNA library Populus tremula x Populus
tremuloides cDNA, mRNA sequence
Length = 389
Score = 46.1 bits (23), Expect = 0.002
Identities = 44/51 (86%)
Strand = Plus / Minus
Query: 490 cctcacgttccacatccccacgttgtccagcggcatgtagatagccgtcca 540
||||| ||||||||||||||| |||||||| || || || ||||| |||||
Sbjct: 195 cctcaagttccacatccccacattgtccagtggaatatatatagcagtcca 145
>gb|BU812401.1|BU812401 UL95TH09 Populus leaf cDNA library Populus tremula x Populus
tremuloides cDNA 5 prime, mRNA sequence
Length = 506
Score = 46.1 bits (23), Expect = 0.002
Identities = 44/51 (86%)
Strand = Plus / Minus
Query: 490 cctcacgttccacatccccacgttgtccagcggcatgtagatagccgtcca 540
||||| ||||||||||||||| |||||||| || || || ||||| |||||
Sbjct: 161 cctcaagttccacatccccacattgtccagtggaatatatatagcagtcca 111
>gb|BU812908.1|BU812908 N002H02 Populus bark cDNA library Populus tremula x Populus
tremuloides cDNA 5 prime, mRNA sequence
Length = 176
Score = 46.1 bits (23), Expect = 0.002
Identities = 26/27 (96%)
Strand = Plus / Minus
Query: 490 cctcacgttccacatccccacgttgtc 516
||||| |||||||||||||||||||||
Sbjct: 154 cctcaagttccacatccccacgttgtc 128
>gb|CA927109.1|CA927109 MTU6CR.P5.A10 Aspen root cDNA Library Populus tremuloides cDNA,
mRNA sequence
Length = 382
Score = 46.1 bits (23), Expect = 0.002
Identities = 44/51 (86%)
Strand = Plus / Plus
Query: 490 cctcacgttccacatccccacgttgtccagcggcatgtagatagccgtcca 540
||||| ||||||||||||||| |||||||| || || || ||||| |||||
Sbjct: 281 cctcaagttccacatccccacattgtccagtggaatatatatagcagtcca 331
>gb|BU879578.1|BU879578 V062A01 Populus flower cDNA library Populus trichocarpa cDNA 5
prime, mRNA sequence
Length = 251
Score = 42.1 bits (21), Expect = 0.023
Identities = 45/53 (84%)
Strand = Plus / Minus
Query: 490 cctcacgttccacatccccacgttgtccagcggcatgtagatagccgtccatg 542
||||| ||||||||||||||| ||||| || || || || ||||| |||||||
Sbjct: 218 cctcaagttccacatccccacattgtcgagtggaatatatatagcagtccatg 166
>gb|BU891297.1|BU891297 P048D08 Populus petioles cDNA library Populus tremula cDNA 5 prime,
mRNA sequence
Length = 509
Score = 42.1 bits (21), Expect = 0.023
Identities = 24/25 (96%)
Strand = Plus / Minus
Query: 490 cctcacgttccacatccccacgttg 514
||||| |||||||||||||||||||
Sbjct: 26 cctcaagttccacatccccacgttg 2
>gb|CN523502.1|CN523502 GQ015M07.T3_B08 GQ015 Populus trichocarpa x Populus deltoides cDNA
clone GQ015M07_B08 5', mRNA sequence
Length = 777
Score = 42.1 bits (21), Expect = 0.023
Identities = 45/53 (84%)
Strand = Plus / Minus
Query: 490 cctcacgttccacatccccacgttgtccagcggcatgtagatagccgtccatg 542
||||| ||||||||||||||| ||||| || || || || ||||| |||||||
Sbjct: 494 cctcaagttccacatccccacattgtcgagtggaatatatatagcagtccatg 442
>gb|DN492283.1|DN492283 V062A01.3pR Populus male catkins cDNA library Populus trichocarpa
cDNA clone V062A01 3', mRNA sequence
Length = 750
Score = 42.1 bits (21), Expect = 0.023
Identities = 45/53 (84%)
Strand = Plus / Plus
Query: 490 cctcacgttccacatccccacgttgtccagcggcatgtagatagccgtccatg 542
||||| ||||||||||||||| ||||| || || || || ||||| |||||||
Sbjct: 492 cctcaagttccacatccccacattgtcgagtggaatatatatagcagtccatg 544
>gb|DT476539.1|DT476539 WS01229.B21_P03 PT-GT-FL-A-3 Populus trichocarpa cDNA clone
WS01229_P03 3', mRNA sequence
Length = 869
Score = 42.1 bits (21), Expect = 0.023
Identities = 45/53 (84%)
Strand = Plus / Plus
Query: 490 cctcacgttccacatccccacgttgtccagcggcatgtagatagccgtccatg 542
||||| ||||||||||||||| ||||| || || || || ||||| |||||||
Sbjct: 501 cctcaagttccacatccccacattgtcgagtggaatatatatagcagtccatg 553
>gb|DT485142.1|DT485142 WS02527.B21_G13 PT-MB-N-A-15 Populus trichocarpa cDNA clone
WS02527_G13 3', mRNA sequence
Length = 904
Score = 42.1 bits (21), Expect = 0.023
Identities = 45/53 (84%)
Strand = Plus / Plus
Query: 490 cctcacgttccacatccccacgttgtccagcggcatgtagatagccgtccatg 542
||||| ||||||||||||||| ||||| || || || || ||||| |||||||
Sbjct: 496 cctcaagttccacatccccacattgtcgagtggaatatatatagcagtccatg 548
>gb|DT511310.1|DT511310 WS02416.B21_B23 PTxD-ICC-N-A-14 Populus trichocarpa x Populus
deltoides cDNA clone WS02416_B23 3', mRNA sequence
Length = 914
Score = 42.1 bits (21), Expect = 0.023
Identities = 45/53 (84%)
Strand = Plus / Plus
Query: 490 cctcacgttccacatccccacgttgtccagcggcatgtagatagccgtccatg 542
||||| ||||||||||||||| ||||| || || || || ||||| |||||||
Sbjct: 476 cctcaagttccacatccccacattgtcgagtggaatatatatagcagtccatg 528
>gb|DT518220.1|DT518220 WS02436.B21_I16 PTxD-ICC-N-A-14 Populus trichocarpa x Populus
deltoides cDNA clone WS02436_I16 3', mRNA sequence
Length = 915
Score = 42.1 bits (21), Expect = 0.023
Identities = 45/53 (84%)
Strand = Plus / Plus
Query: 490 cctcacgttccacatccccacgttgtccagcggcatgtagatagccgtccatg 542
||||| ||||||||||||||| ||||| || || || || ||||| |||||||
Sbjct: 476 cctcaagttccacatccccacattgtcgagtggaatatatatagcagtccatg 528
>gb|BU829453.1|BU829453 K040P92P Populus apical shoot cDNA library Populus tremula x
Populus tremuloides cDNA 5 prime, mRNA sequence
Length = 483
Score = 38.2 bits (19), Expect = 0.37
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 133 atacaacaaatcgaccggg 151
|||||||||||||||||||
Sbjct: 369 atacaacaaatcgaccggg 351
>gb|CK089922.1|CK089922 C045P15.3pR Populus strain T89 leaves Populus tremula x Populus
tremuloides cDNA clone C045P15 3', mRNA sequence
Length = 413
Score = 38.2 bits (19), Expect = 0.37
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 133 atacaacaaatcgaccggg 151
|||||||||||||||||||
Sbjct: 109 atacaacaaatcgaccggg 127
>gb|CV230926.1|CV230926 WS0193.B21_A09 PT-DX-N-A-10 Populus trichocarpa cDNA clone
WS0193_A09 3', mRNA sequence
Length = 438
Score = 38.2 bits (19), Expect = 0.37
Identities = 31/35 (88%)
Strand = Plus / Plus
Query: 524 atgtagatagccgtccatgactgagggtacacctg 558
||||||||||| |||||||||| || ||||||||
Sbjct: 363 atgtagatagcagtccatgacttgggatacacctg 397
>gb|CV256643.1|CV256643 WS0244.B21_G18 PTxD-ICC-N-A-14 Populus trichocarpa x Populus
deltoides cDNA clone WS0244_G18 3', mRNA sequence
Length = 860
Score = 38.2 bits (19), Expect = 0.37
Identities = 31/35 (88%)
Strand = Plus / Plus
Query: 524 atgtagatagccgtccatgactgagggtacacctg 558
||||||||||| |||||||||| || ||||||||
Sbjct: 367 atgtagatagcagtccatgacttgggatacacctg 401
>gb|CX655574.1|CX655574 PO02036F11 Poplar SC cDNA library Populus alba x Populus tremula
var. glandulosa cDNA clone PO02036F11 5', mRNA sequence
Length = 520
Score = 38.2 bits (19), Expect = 0.37
Identities = 31/35 (88%)
Strand = Plus / Minus
Query: 524 atgtagatagccgtccatgactgagggtacacctg 558
||||||||||| |||||||||| || ||||||||
Sbjct: 291 atgtagatagcagtccatgacttgggatacacctg 257
>gb|DT508892.1|DT508892 WS02422.BR_D15 PTxD-ICC-N-A-14 Populus trichocarpa x Populus
deltoides cDNA clone WS02422_D15 5', mRNA sequence
Length = 506
Score = 38.2 bits (19), Expect = 0.37
Identities = 31/35 (88%)
Strand = Plus / Minus
Query: 524 atgtagatagccgtccatgactgagggtacacctg 558
||||||||||| |||||||||| || ||||||||
Sbjct: 404 atgtagatagcagtccatgacttgggatacacctg 370
>gb|DT510085.1|DT510085 WS02425.BR_I20 PTxD-ICC-N-A-14 Populus trichocarpa x Populus
deltoides cDNA clone WS02425_I20 5', mRNA sequence
Length = 837
Score = 38.2 bits (19), Expect = 0.37
Identities = 31/35 (88%)
Strand = Plus / Minus
Query: 524 atgtagatagccgtccatgactgagggtacacctg 558
||||||||||| |||||||||| || ||||||||
Sbjct: 499 atgtagatagcagtccatgacttgggatacacctg 465
>gb|DT513501.1|DT513501 WS02422.B21_D15 PTxD-ICC-N-A-14 Populus trichocarpa x Populus
deltoides cDNA clone WS02422_D15 3', mRNA sequence
Length = 507
Score = 38.2 bits (19), Expect = 0.37
Identities = 31/35 (88%)
Strand = Plus / Plus
Query: 524 atgtagatagccgtccatgactgagggtacacctg 558
||||||||||| |||||||||| || ||||||||
Sbjct: 104 atgtagatagcagtccatgacttgggatacacctg 138
>gb|DT514705.1|DT514705 WS02425.B21_I20 PTxD-ICC-N-A-14 Populus trichocarpa x Populus
deltoides cDNA clone WS02425_I20 3', mRNA sequence
Length = 853
Score = 38.2 bits (19), Expect = 0.37
Identities = 31/35 (88%)
Strand = Plus / Plus
Query: 524 atgtagatagccgtccatgactgagggtacacctg 558
||||||||||| |||||||||| || ||||||||
Sbjct: 355 atgtagatagcagtccatgacttgggatacacctg 389
>gb|DT517583.1|DT517583 WS02434.B21_L14 PTxD-ICC-N-A-14 Populus trichocarpa x Populus
deltoides cDNA clone WS02434_L14 3', mRNA sequence
Length = 829
Score = 38.2 bits (19), Expect = 0.37
Identities = 31/35 (88%)
Strand = Plus / Plus
Query: 524 atgtagatagccgtccatgactgagggtacacctg 558
||||||||||| |||||||||| || ||||||||
Sbjct: 362 atgtagatagcagtccatgacttgggatacacctg 396
Database: Populus_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:49 PM
Number of letters in database: 203,408,664
Number of sequences in database: 369,679
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 60,157
Number of Sequences: 369679
Number of extensions: 60157
Number of successful extensions: 15798
Number of sequences better than 0.5: 43
Number of HSP's better than 0.5 without gapping: 43
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 15740
Number of HSP's gapped (non-prelim): 58
length of query: 591
length of database: 203,408,664
effective HSP length: 19
effective length of query: 572
effective length of database: 196,384,763
effective search space: 112332084436
effective search space used: 112332084436
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)