BLASTN 2.2.10 [Oct-19-2004]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 2576887.2.1
         (1138 letters)

Database: Populus_nucl_with_EST.fasta 
           369,679 sequences; 203,408,664 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|BU820598.1|BU820598  UB11CPH09 Populus tremula cambium cD...    44   0.012
gb|CA933881.1|CA933881  MTU3TS.P13.H01 Aspen stem cDNA Libra...    42   0.046

>gb|BU820598.1|BU820598 UB11CPH09 Populus tremula cambium cDNA library Populus tremula cDNA
           5 prime, mRNA sequence
          Length = 480

 Score = 44.1 bits (22), Expect = 0.012
 Identities = 49/58 (84%)
 Strand = Plus / Plus

                                                                     
Query: 439 tgggctcacgagtgggagaaacatggaacctgctctgcccctgtggttcaggatgaat 496
           ||||| || ||||||||||| |||||||| |||||  | || |||||||| |||||||
Sbjct: 419 tgggcacatgagtgggagaagcatggaacttgctcctctccagtggttcacgatgaat 476



>gb|CA933881.1|CA933881 MTU3TS.P13.H01 Aspen stem cDNA Library Populus tremuloides cDNA,
           mRNA sequence
          Length = 537

 Score = 42.1 bits (21), Expect = 0.046
 Identities = 42/49 (85%)
 Strand = Plus / Minus

                                                            
Query: 448 gagtgggagaaacatggaacctgctctgcccctgtggttcaggatgaat 496
           ||||||||||| |||||||| |||||  | ||||| ||||| |||||||
Sbjct: 515 gagtgggagaagcatggaacttgctcctctcctgttgttcacgatgaat 467



  Database: Populus_nucl_with_EST.fasta
    Posted date:  Feb 7, 2006  2:49 PM
  Number of letters in database: 203,408,664
  Number of sequences in database:  369,679
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 110,169
Number of Sequences: 369679
Number of extensions: 110169
Number of successful extensions: 28606
Number of sequences better than  0.5: 2
Number of HSP's better than  0.5 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 28603
Number of HSP's gapped (non-prelim): 3
length of query: 1138
length of database: 203,408,664
effective HSP length: 19
effective length of query: 1119
effective length of database: 196,384,763
effective search space: 219754549797
effective search space used: 219754549797
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)